GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_000949015.1	NZ_JYHS01000001	NZ_JYHS01000001.1	Acidiplasma sp. MBA-1 accurate_c1; whole genome shotgun sequence.	210835	214226	108188	105276	638525	0.33	0.34	0.17	0.16	0.33	0.9298	0.0216	0.9786	1.9192	324	317	641	201203	167891	85860	112507	567461	0.36	0.29	0.15	0.2	0.35	0.885	0.2828	0.7599	1.9052	876	307	288	595	193742	160997	82293	108149	545181	0.36	0.29	0.15	0.2	0.34	0.8853	0.2852	0.7579	1.9043	697	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2	2	159	111	142	184	596	0.27	0.19	0.24	0.31	0	0.55	0.9023	0.302	0.7444	1.9716	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	7	7	14	215	234	295	342	1086	0.2	0.22	0.27	0.31	0	0.58	0.881	0.2191	0.8132	1.9617	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	5153	4301	2889	1239	5631	4060	1476	7007	1863	1444	9666	6503	5296	638	1276	2695	1880	1577	2182	6943	2230	3732	903	7923	2289	1582	1367	1242	7010	3779	1405	5273	840	11466	4763	2066	629	800	2643	2605	1683	225	9327	2791	705	4883	1542	2757	414	2073	610	779	5123	1359	3400	2845	49	215	967	410	688	412	134	70
GCF_000949015.1	NZ_JYHS01000005	NZ_JYHS01000005.1	Acidiplasma sp. MBA-1 accurate_c10; whole genome shotgun sequence.	69226	69669	36043	35806	210744	0.33	0.33	0.17	0.17	0.34	0.9279	0.0065	0.9935	1.9257	101	116	217	63098	54095	28765	36575	182533	0.35	0.3	0.15	0.2	0.35	0.886	0.2579	0.7779	1.9155	365	94	104	198	57082	49181	25998	32979	165240	0.35	0.3	0.15	0.2	0.35	0.8859	0.2581	0.7776	1.9146	308	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	2	2	29	29	48	44	150	0.19	0.19	0.32	0.29	0	0.61	0.8709	0.1334	0.8765	1.9581	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1579	1161	895	365	1824	1125	453	2160	566	481	2717	1713	1662	202	355	841	522	532	756	2240	706	1162	293	2232	644	524	448	435	2065	1242	479	1604	275	3387	1640	635	198	261	818	743	589	56	2611	944	210	1413	521	757	119	666	227	260	1535	444	1019	859	16	52	367	93	180	119	63	20
GCF_000949015.1	NZ_JYHS01000006	NZ_JYHS01000006.1	Acidiplasma sp. MBA-1 accurate_c11; whole genome shotgun sequence.	9324	8929	4546	4600	27399	0.34	0.33	0.17	0.17	0.33	0.919	0.0275	0.9729	1.9185	12	16	28	8631	6939	3567	4761	23898	0.35	0.28	0.16	0.21	0.37	0.8812	0.3098	0.7456	1.9108	27	11	13	24	8320	6653	3374	4537	22884	0.36	0.29	0.15	0.2	0.35	0.882	0.3036	0.7429	1.9121	27	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	2	2	31	32	45	48	156	0.2	0.21	0.29	0.31	0	0.6	0.8981	0.1028	0.9034	1.969	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	190	209	143	50	222	185	47	302	67	52	380	287	235	27	47	131	84	67	91	273	82	123	38	389	114	67	56	68	318	131	56	219	36	486	181	98	26	28	102	94	79	12	412	117	19	186	63	127	15	80	25	36	196	65	163	121	2	10	36	17	21	16	6	3
GCF_000949015.1	NZ_JYHS01000008	NZ_JYHS01000008.1	Acidiplasma sp. MBA-1 accurate_c154; whole genome shotgun sequence.	337	511	143	106	1097	0.31	0.47	0.13	0.1	0.23	0.8535	0.3538	0.7004	1.7454	0	1	1	68	34	10	23	135	0.5	0.25	0.07	0.17	0.24	0.8479	0.7273	0.4674	1.7125	0	0	1	1	68	34	10	23	135	0.5	0.25	0.07	0.17	0.24	0.8479	0.7273	0.4674	1.7125	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	1	2	1	0	0	0	1	0	0	3	6	0	0	0	1	1	0	0	1	0	0	0	3	0	0	0	0	1	0	0	0	0	4	1	0	0	0	0	0	2	0	4	0	0	1	1	3	0	2	0	0	3	0	0	0	0	0	1	0	0	1	0	0
GCF_000949015.1	NZ_JYHS01000009	NZ_JYHS01000009.1	Acidiplasma sp. MBA-1 accurate_c162; whole genome shotgun sequence.	217	304	204	127	852	0.25	0.36	0.24	0.15	0.39	0.8962	0.3996	0.6682	1.9362	0	1	1	69	71	34	66	240	0.29	0.3	0.14	0.28	0.42	0.8747	0.3343	0.7435	1.9485	0	0	1	1	69	71	34	66	240	0.29	0.3	0.14	0.28	0.42	0.8747	0.3343	0.7435	1.9485	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	3	2	1	1	0	3	0	4	1	2	0	5	5	0	0	0	1	2	0	2	1	2	0	8	2	1	0	0	2	1	0	1	0	0	1	2	0	0	0	1	3	0	2	1	0	3	1	1	4	3	0	0	1	2	2	1	0	0	0	1	0	1	0	0
GCF_000949015.1	NZ_JYHS01000002	NZ_JYHS01000002.1	Acidiplasma sp. MBA-1 accurate_c2; whole genome shotgun sequence.	151613	151820	81046	82366	466845	0.32	0.33	0.17	0.18	0.35	0.9319	0.0088	0.9913	1.9341	257	264	521	151919	122108	67379	88666	430072	0.35	0.28	0.16	0.21	0.37	0.8862	0.2972	0.7498	1.9143	1284	228	241	469	141802	114089	62744	82621	401256	0.36	0.28	0.15	0.21	0.36	0.886	0.3032	0.7453	1.9123	1056	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	10	11	21	308	315	437	498	1558	0.2	0.2	0.28	0.32	0	0.6	0.8868	0.1774	0.8441	1.9574	0	1	1	26	31	30	34	121	0.21	0.26	0.25	0.28	0	0.53	0.8747	0.1502	0.8605	1.9935	3872	3552	2221	832	4099	3339	1033	4671	1467	1018	6462	4801	3916	472	904	2144	1312	1282	1606	4666	1634	2739	665	5915	1950	1255	889	789	4762	2691	1056	3993	668	8392	3699	1650	497	652	2004	1842	1269	206	6568	2290	510	3645	1243	2097	270	1526	472	588	3307	1110	2719	2208	38	154	831	326	481	297	133	53
GCF_000949015.1	NZ_JYHS01000007	NZ_JYHS01000007.1	Acidiplasma sp. MBA-1 accurate_c24; whole genome shotgun sequence.	5542	5579	2314	2194	15629	0.35	0.36	0.15	0.14	0.29	0.9034	0.0299	0.9708	1.8665	9	10	19	3935	3471	1455	1775	10636	0.37	0.31	0.14	0.18	0.32	0.8697	0.2366	0.7978	1.8818	68	6	8	14	3084	2742	1134	1374	8334	0.37	0.31	0.14	0.18	0.32	0.8703	0.247	0.7902	1.8796	47	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	66	77	45	31	51	42	31	131	25	32	200	87	75	5	33	35	57	17	43	104	24	41	9	106	23	18	35	38	147	51	33	46	14	158	60	19	14	18	45	14	29	3	159	24	10	65	19	33	13	35	8	9	118	20	33	39	1	1	7	7	29	8	5	3
GCF_000949015.1	NZ_JYHS01000003	NZ_JYHS01000003.1	Acidiplasma sp. MBA-1 accurate_c3; whole genome shotgun sequence.	105432	108535	56783	55454	326204	0.32	0.33	0.17	0.17	0.34	0.9315	0.0263	0.974	1.9285	158	194	352	106279	86503	45853	61168	299803	0.36	0.28	0.15	0.21	0.36	0.8862	0.2986	0.7483	1.911	538	147	183	330	100516	81820	42906	57442	282684	0.36	0.29	0.15	0.2	0.35	0.886	0.3039	0.7442	1.9097	475	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	3	4	7	106	106	138	170	520	0.2	0.2	0.27	0.33	0	0.59	0.8851	0.1515	0.8639	1.9673	2	0	2	1241	960	920	1257	4378	0.28	0.22	0.21	0.29	0	0.5	0.926	0.2755	0.7583	1.9851	2811	2417	1552	607	2834	2280	749	3501	957	657	4336	3468	2717	301	700	1478	973	870	1065	3478	1126	2152	436	4170	1338	854	663	526	3424	1962	730	2773	432	6166	2702	1096	338	465	1300	1303	878	116	4819	1487	339	2679	787	1415	238	1020	282	412	2495	724	1809	1535	31	83	527	212	292	224	75	42
GCF_000949015.1	NZ_JYHS01000004	NZ_JYHS01000004.1	Acidiplasma sp. MBA-1 accurate_c8; whole genome shotgun sequence.	19997	20750	9789	9533	60069	0.33	0.35	0.16	0.16	0.32	0.919	0.0317	0.9688	1.906	26	33	59	19689	16418	7812	10255	54174	0.37	0.3	0.14	0.19	0.33	0.8849	0.2945	0.7511	1.8903	95	22	31	53	17767	14490	6994	9208	48459	0.37	0.29	0.14	0.19	0.33	0.8855	0.2915	0.7532	1.8913	83	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	469	367	241	108	478	321	120	619	155	105	994	517	421	75	120	273	160	121	182	638	157	295	68	683	173	133	111	124	679	352	112	422	65	1049	417	188	40	73	241	194	178	6	947	262	64	427	135	219	29	219	85	65	551	108	295	227	6	13	114	26	63	34	13	7