GBRAP

Genome-Based Retrieval and Analysis Parser


ARCHAEA : Candidatus_Nitrosotalea_bavarica
Assembly Assembly Locus_ID Locus_ID Version Version Definition Sequence description bp_chromo_A Total number of 'A' nucleotides in the whole sequence bp_chromo_T Total number of 'T' nucleotides in the whole sequence bp_chromo_C Total number of 'C' nucleotides in the whole sequence bp_chromo_G Total number of 'G' nucleotides in the whole sequence bp_chromo_N Total number of 'N' nucleotides in the whole sequence bp_chromo_tot Total number of nucleotides in the whole sequence fr_chromo_A Frequency of 'A' nucleotides in the whole sequence fr_chromo_T Frequency of 'T' nucleotides in the whole sequence fr_chromo_C Frequency of 'C' nucleotides in the whole sequence fr_chromo_G Frequency of 'G' nucleotides in the whole sequence fr_chromo_N Frequency of 'N' nucleotides in the whole sequence GC_chromo Percentage of ā€˜G’ + ā€˜C’ nucleotides in the whole sequence topo_entropy_chromo Topological entropy of the whole sequence chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee shannon_chromo Shannon entropy of the whole sequence n_gene_pos Number of genes in the positive strand n_gene_neg Number of genes in the negative strand n_gene_tot Total number of genes in the chromosome bp_gene_A Number of 'A' bases in total genes bp_gene_T Number of 'T' bases in total genes bp_gene_C Number of 'C' bases in total genes bp_gene_G Number of 'G' bases in total genes bp_gene_N Number of 'N' bases in total genes bp_gene_tot Total number of bases in total genes fr_gene_A Frequency of 'A' bases among total gene bases fr_gene_T Frequency of 'T' bases among total gene bases fr_gene_C Frequency of 'C' bases among total gene bases fr_gene_G Frequency of 'G' bases among total gene bases fr_gene_N Frequency of 'N' bases among total gene bases GC_gene Percentage of 'G' and 'C' bases in total genes topo_entropy_gene Topological entropy calculated from total gene sequences chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes shannon_gene Shannon entropy score for total genes bp_gene_overlap_tot Number of bases overlapping between genes on two strands n_cds_pos Number of CDS in the positive strand n_cds_neg Number of CDS in the negative strand n_cds_tot Total number of CDS in the chromosome bp_cds_A Number of 'A' bases in total CDS (coding sequences) bp_cds_T Number of 'T' bases in total CDS bp_cds_C Number of 'C' bases in total CDS bp_cds_G Number of 'G' bases in total CDS bp_cds_N Number of 'N' bases in total CDS bp_cds_tot Total bases in total CDS fr_cds_A Frequency of 'A' bases among total CDS bases fr_cds_T Frequency of 'T' bases among total CDS bases fr_cds_C Frequency of 'C' bases among total CDS bases fr_cds_G Frequency of 'G' bases among total CDS bases fr_cds_N Frequency of 'N' bases among total CDS bases GC_cds Percentage of 'G' and 'C' bases in total CDS topo_entropy_cds Topological entropy calculated from total CDS sequences chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS shannon_cds Shannon entropy score for total CDS bp_cds_overlap_tot Number of bases overlapping between CDS on two strands bp_cds_intron_A Number of 'A' bases in total introns between CDS bp_cds_intron_T Number of 'T' bases in total introns between CDS bp_cds_intron_C Number of 'C' bases in total introns between CDS bp_cds_intron_G Number of 'G' bases in total introns between CDS bp_cds_intron_N Number of 'N' bases in total introns between CDS bp_cds_intron_tot Total bases in total introns between CDS fr_cds_intron_A Frequency of 'A' bases in total introns between CDS fr_cds_intron_T Frequency of 'T' bases in total introns between CDS fr_cds_intron_C Frequency of 'C' bases in total introns between CDS fr_cds_intron_G Frequency of 'G' bases in total introns between CDS fr_cds_intron_N Frequency of 'N' bases in total introns between CDS GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS shannon_cds_intron Shannon entropy score for total introns between CDS bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands n_ncRNA_pos Number of ncRNA in the positive strand n_ncRNA_neg Number of ncRNA in the negative strand n_ncRNA_tot Total number of ncRNA in the chromosome bp_ncRNA_A Number of 'A' bases in total ncRNA bp_ncRNA_T bp_ncRNA_T bp_ncRNA_C Number of 'C' bases in total ncRNA bp_ncRNA_G Number of 'G' bases in total ncRNA bp_ncRNA_N Number of 'N' bases in total ncRNA bp_ncRNA_tot Total bases in total ncRNA fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA shannon_ncRNA Shannon entropy score for total ncRNA bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands bp_nc_intron_A Number of 'A' bases in total introns between ncRNA bp_nc_intron_T Number of 'T' bases in total introns between ncRNA bp_nc_intron_C Number of 'C' bases in total introns between ncRNA bp_nc_intron_G Number of 'G' bases in total introns between ncRNA bp_nc_intron_N Number of 'N' bases in total introns between ncRNA bp_nc_intron_tot Total bases in total introns between ncRNA fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA shannon_nc_intron Shannon entropy score for total introns between ncRNA bp_nc_intron_overlap_tot Number of bases overlapping between introns between ncRNA on two strands n_tRNA_pos Number of tRNA in the positive strand n_tRNA_neg Number of tRNA in the negative strand n_tRNA_tot Total number of tRNA in the chromosome bp_tRNA_A Number of 'A' bases in total tRNA bp_tRNA_T Number of 'T' bases in total tRNA bp_tRNA_C Number of 'C' bases in total tRNA bp_tRNA_G Number of 'G' bases in total tRNA bp_tRNA_N Number of 'N' bases in total tRNA bp_tRNA_tot Total bases in total tRNA fr_tRNA_A Frequency of 'A' bases among total tRNA bases fr_tRNA_T Frequency of 'T' bases among total tRNA bases fr_tRNA_C Frequency of 'C' bases among total tRNA bases fr_tRNA_G Frequency of 'G' bases among total tRNA bases fr_tRNA_N Frequency of 'N' bases among total tRNA bases GC_tRNA Percentage of 'G' and 'C' bases in total tRNA topo_entropy_tRNA Topological entropy calculated from total tRNA sequences chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA shannon_tRNA Shannon entropy score for total tRNA bp_tRNA_overlap_tot Number of bases overlapping between tRNA on two strands n_rRNA_pos Number of rRNA in the positive strand n_rRNA_neg Number of rRNA in the negative strand n_rRNA_tot Total number of rRNA in the chromosome bp_rRNA_A Number of 'A' bases in total rRNA bp_rRNA_T Number of 'T' bases in total rRNA bp_rRNA_C Number of 'C' bases in total rRNA bp_rRNA_G Number of 'G' bases in total rRNA bp_rRNA_N Number of 'N' bases in total rRNA bp_rRNA_tot Total bases in total rRNA fr_rRNA_A Frequency of 'A' bases among total rRNA bases fr_rRNA_T Frequency of 'T' bases among total rRNA bases fr_rRNA_C Frequency of 'C' bases among total rRNA bases fr_rRNA_G Frequency of 'G' bases among total rRNA bases fr_rRNA_N Frequency of 'N' bases among total rRNA bases GC_rRNA Percentage of 'G' and 'C' bases in total rRNA topo_entropy_rRNA Topological entropy calculated from total rRNA sequences chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA shannon_rRNA Shannon entropy score for total rRNA bp_rRNA_overlap_tot Number of bases overlapping between rRNA on two strands ATG ATG AAG AAG GTA GTA ACT ACT GCA GCA GAG GAG GCT GCT ATT ATT TCC TCC TGG TGG AAT AAT GAA GAA TCA TCA ACG ACG AGT AGT AAC AAC TCT TCT GTG GTG TTC TTC TTT TTT CTG CTG GGT GGT CTC CTC GAT GAT CAG CAG ACC ACC CTA CTA TTG TTG TAT TAT GGA GGA ATC ATC CTT CTT GTC GTC ATA ATA ACA ACA GAC GAC CAC CAC CCC CCC TAC TAC GCC GCC AGC AGC CGC CGC AAA AAA GGC GGC TGC TGC GTT GTT GGG GGG AGA AGA TGT TGT CAT CAT TCG TCG GCG GCG TTA TTA CCT CCT AGG AGG CCA CCA TAG TAG CGG CGG CCG CCG CGT CGT CAA CAA TAA TAA TGA TGA CGA CGA
GCF_900167955.1NZ_FUYK01000019NZ_FUYK01000019.1Candidatus Nitrosotalea bavarica isolate SBT1; whole genome shotgun sequence.622785364415021860.280.360.170.1900.360.90250.18130.83471.9323033617433328307016850.360.250.190.200.390.88560.26940.76951.94190022587413314288016020.360.250.20.1800.390.89430.22840.80331.94020000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000000NANANANANANANANANANA081117102843217102110200112166615116223810651512153820311010112901740625281144116102213101
GCF_900167955.1NZ_FUYK01000018NZ_FUYK01000018.1Candidatus Nitrosotalea bavarica isolate SBT1; whole genome shotgun sequence.7056343963973721690.330.290.180.180.020.370.91320.05430.94841.942224696494322391019030.360.240.180.2300.40.87520.33230.72311.94390101443329189218011790.380.280.160.1800.350.90440.21890.80481.91810000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000000NANANANANANANANANANA05167711818527311028374814113165313871111131121440053213040120824211151501142101
GCF_900167955.1NZ_FUYK01000016NZ_FUYK01000016.1Candidatus Nitrosotalea bavarica isolate SBT1; whole genome shotgun sequence.12331072535692035320.350.30.150.200.350.90330.19780.82131.92533031064857439610029700.360.290.140.200.350.89750.27160.76421.91814202570481223334016080.360.30.140.200.340.89250.27870.76031.91150000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000000NANANANANANANANANANA015723141391027442225638915341531332954121171351122089103231338317412390113225012511112
GCF_900167955.1NZ_FUYK01000015NZ_FUYK01000015.1Candidatus Nitrosotalea bavarica isolate SBT1; whole genome shotgun sequence.460635322286017030.270.370.190.1700.360.90580.2190.80631.9274011406245167193010110.40.240.170.1900.360.87780.31950.73441.90930011406245167193010110.40.240.170.1900.360.87780.31950.73441.90930000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000000NANANANANANANANANANA081493571092310136239532964393874965721612521255034223351411837201105100
GCF_900167955.1NZ_FUYK01000013NZ_FUYK01000013.1Candidatus Nitrosotalea bavarica isolate SBT1; whole genome shotgun sequence.229852359312221132590720580.320.330.170.1800.350.93360.05380.9481.9367564410020414161769723115960579090.370.280.160.1900.350.88560.2630.77741.913464231731357110549606570840372690.370.280.160.1900.350.88330.2820.76391.9086000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000NANANANANANANANANANA0000000000NANANANANANANANANANA020212069569731336044710.270.210.220.300.520.92040.26970.7631.98340361278332272401182152494921334455813146319018727299125421771887451214498168167335331165262103441347163513711581751772310252255602791041835145238140522441394550318392155
GCF_900167955.1NZ_FUYK01000012NZ_FUYK01000012.1Candidatus Nitrosotalea bavarica isolate SBT1; whole genome shotgun sequence.1632615673868893910500780.330.310.170.1900.360.92790.05930.94261.94294723701611512124760088610447000.370.260.170.200.370.88930.26180.77831.923558381755127389517594070220352170.370.260.160.200.360.88780.28010.76471.919632000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000NANANANANANANANANANA01122932414701490.190.210.280.3200.590.89260.11520.89481.96150000000000NANANANANANANANANANA033829934125142616515245362883885252984212918222610098356782497243111081178174237357193294106349327155774210896732573913939270702847018249441961205526311103957267251960
GCF_900167955.1NZ_FUYK01000011NZ_FUYK01000011.1Candidatus Nitrosotalea bavarica isolate SBT1; whole genome shotgun sequence.2496723291136421325442751960.330.310.180.1800.360.93260.04920.95221.945353106217491723110747122530619800.360.280.170.200.370.88490.27570.77041.92332449439219186150979511107790545730.360.270.170.200.370.88580.26560.77781.924924000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000000NANANANANANANANANANA054142651037273031923463112115464966046579266347313148186631133323124662221135294312392554343418188621533299113531921611303289520756411813559724269683191857039534166663420441370
GCF_900167955.1NZ_FUYK01000017NZ_FUYK01000017.1Candidatus Nitrosotalea bavarica isolate SBT1; whole genome shotgun sequence.32223633164621590106600.30.340.150.200.360.92170.19480.82461.93381453186269420111505093960.370.290.190.1500.340.89220.22510.80381.9034011235826511511708550.420.310.140.1400.280.87550.15970.86021.8340000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000000NANANANANANANANANANA05735104217111214400351713030151021146661187121211031106011800743402138201
GCF_900167955.1NZ_FUYK01000001NZ_FUYK01000001.1Candidatus Nitrosotalea bavarica isolate SBT1; whole genome shotgun sequence.53522512232973429981201644800.330.310.180.1800.360.9320.02610.97441.944998901885285241262249673017521492580.360.270.170.2100.370.89180.26920.7711.928425080651453991331017187842250821122240.360.270.160.200.370.89080.27480.76671.926545000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000NANANANANANANANANANA02245762899803060.190.20.290.3200.610.87820.12710.88321.94690000000000NANANANANANANANANANA0943102610006951445724485148323933312151575962134549501682283373127522073427914523772886715507481218585921368125810396142211253802482196119673891198871449422274641311286854121628205026841578306629189
GCF_900167955.1NZ_FUYK01000002NZ_FUYK01000002.1Candidatus Nitrosotalea bavarica isolate SBT1; whole genome shotgun sequence.54904708311927670160840.340.290.190.1700.370.89290.13650.87241.94391041455154395292628560156920.340.280.170.200.380.88810.23330.79981.9284472941963185222620930117000.360.280.170.1900.360.89190.2660.76941.92384000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000NANANANANANANANANANA0011141523220740.190.20.310.300.610.88090.05670.94491.96550000000000NANANANANANANANANANA0689311085141757814539241101291183546413228291031262281643335104498111762842313214979201135391952082412761074414417671361714220971103317
GCF_900167955.1NZ_FUYK01000003NZ_FUYK01000003.1Candidatus Nitrosotalea bavarica isolate SBT1; whole genome shotgun sequence.6750764985381553857302092200.320.310.180.1800.370.93410.02450.97591.9481211292506529650337319903724901848720.360.270.170.200.370.89180.25370.78281.93253581051022075399041860265293080101531800.360.270.170.200.370.89180.25680.781.9327247000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000NANANANANANANANANANA00222728464801490.180.190.310.3200.630.890.07460.92861.94580000000000NANANANANANANANANANA0144012671441100819859486181821331426161820331318206686771985441448163635889637018935713908347881110160685812195791770143594033317249242534588271956014511072519803727202272259055312451092663117123511639051275
GCF_900167955.1NZ_FUYK01000004NZ_FUYK01000004.1Candidatus Nitrosotalea bavarica isolate SBT1; whole genome shotgun sequence.3485733128174911857021040480.340.320.170.1800.350.92830.05540.94611.93047242114362742797215440193012989890.370.280.160.200.350.89220.26070.77561.915491522880257111972110780135980698100.370.280.150.200.350.89210.27480.76491.911951000000NANANANANANANANANANA00118072669503130.260.230.210.300.510.91410.23280.79741.98630000000NANANANANANANANANANA01234551716702340.20.20.290.3200.610.82810.41760.69731.8790000000000NANANANANANANANANANA0570594740459829354373940121160839107360868348316501160240684125535147989155135381299518813327587146841608278114631701399822147617662553846061983036653541263934782011531024954020110
GCF_900167955.1NZ_FUYK01000005NZ_FUYK01000005.1Candidatus Nitrosotalea bavarica isolate SBT1; whole genome shotgun sequence.230502177913203132210712530.320.310.190.1900.370.93540.0290.97171.951404484212331697411204122720616830.350.270.180.200.380.89110.2440.78971.93834031386917539139039298101250508650.350.270.180.200.380.89090.25080.78411.938415000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000000NANANANANANANANANANA048038947540170229223260910913657558445690225332370146136559123340123550241126295273362514270370164499585293984716413913428733173633698629712823497782551988038316177058451381580
GCF_900167955.1NZ_FUYK01000006NZ_FUYK01000006.1Candidatus Nitrosotalea bavarica isolate SBT1; whole genome shotgun sequence.47714101248524920138490.340.30.180.1800.360.92090.07690.92841.93951041445633718232123940129960.350.290.180.1800.360.89870.17060.84951.9296573102944246214851548084390.350.290.170.1800.350.89430.18020.8411.92464000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000000NANANANANANANANANANA0954198619337421182218106991022445576238389021492399262839575676545420102105291692423181128194641539142717115730358427679338
GCF_900167955.1NZ_FUYK01000007NZ_FUYK01000007.1Candidatus Nitrosotalea bavarica isolate SBT1; whole genome shotgun sequence.1337731384727501477020514243300.320.330.180.1800.360.93610.03050.971.941268230498139590107906643907773683896300.360.270.170.200.370.89110.26340.77491.925748219617437010567881351487505890982946960.360.270.160.200.360.89120.27160.76891.9246302000000NANANANANANANANANANA01018948637602760.320.170.230.2800.50.92080.39280.68411.96420000000NANANANANANANANANANA05813180215288327010100.180.210.290.3300.610.85650.29680.75841.93020000000000NANANANANANANANANANA025792442283921163717157015093782574864322143292480342133813622073809953285852921696524027945714150314012116336315002493833333627301369529311918679500112553885424322994312329628121534237418941151408211612155310384234117374463
GCF_900167955.1NZ_FUYK01000008NZ_FUYK01000008.1Candidatus Nitrosotalea bavarica isolate SBT1; whole genome shotgun sequence.2314923945130181359628737360.310.320.180.1800.360.93290.03860.96211.94316140101221891845010959129940645920.340.280.170.2100.380.88650.24540.79061.937149318019117159269202112280554730.350.280.170.200.370.88610.25520.78331.925271000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000NANANANANANANANANANA0336959512714104580.20.190.280.3200.60.82310.2880.76791.935501012522373601200.210.180.310.300.610.86820.07750.92651.9646057842853734476334127368992229526737410602302483861342716261134591226771721093093003986143005051716384522511364922415210026965150394555843212524548593632206036818126766402402298
GCF_900167955.1NZ_FUYK01000014NZ_FUYK01000014.1Candidatus Nitrosotalea bavarica isolate SBT1; whole genome shotgun sequence.1209213443680571730395130.310.340.170.1800.350.92290.07920.92411.9359212647125789444575466600344360.370.270.160.200.360.88730.26770.77171.91883017213895517262440950550262770.370.280.160.200.360.88520.26990.77021.918916000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000000NANANANANANANANANANA02511962551653021289034761753723562154413616015570892596115965324939010615819424813617879342295126562682716814474103271855416258104362419395271741153327205131438
GCF_900167955.1NZ_FUYK01000009NZ_FUYK01000009.1Candidatus Nitrosotalea bavarica isolate SBT1; whole genome shotgun sequence.3513437402199691992101124260.310.330.180.1800.350.93040.03250.96851.937852831353724329124171902042701039840.360.280.170.200.360.89140.24510.78761.9251913963102279122154712714151790773520.360.280.160.200.360.89010.25510.781.921859000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000NANANANANANANANANANA02134043667702260.170.180.290.3600.650.84270.19750.82951.91060000000000NANANANANANANANANANA06656847865219614624151120114201785120568260333289499155238783121577180104429317642332655582439979522882072934212080225153147311466220596356164916535175574292871125863010671266405319141
GCF_900167955.1NZ_FUYK01000010NZ_FUYK01000010.1Candidatus Nitrosotalea bavarica isolate SBT1; whole genome shotgun sequence.3355034250198291900721066380.310.320.190.1800.360.93190.03150.96911.94595372125327122633815646191360938320.340.280.170.2100.390.89250.25290.78261.931769345185232021862011235133630664200.350.280.160.200.370.89130.25980.77781.930141000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000NANANANANANANANANANA0551013616122224507640.180.220.290.3100.60.85270.22030.81071.94970000000000NANANANANANANANANANA05795716274869183564108451152086649045545830238047315524471311756314183122116933828445772833157719972261833212155233155106311158230675748548617332163673902581014912676578473352477