GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_026248685.1	NZ_CP111036	NZ_CP111036.1	Haladaptatus caseinilyticus strain ZJ1 chromosome; complete genome.	542526	539766	783026	782433	2647751	0.2	0.2	0.3	0.3	0.59	0.9397	0.0029	0.9971	1.9758	1408	1449	2857	508948	422867	689653	712465	2333933	0.22	0.18	0.29	0.3	0.6	0.8905	0.2001	0.8285	1.9598	1716	1366	1406	2772	502166	416854	680389	702650	2302059	0.22	0.18	0.29	0.3	0.6	0.8906	0.2007	0.828	1.9599	1661	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	1	2	143	106	208	236	693	0.2	0.15	0.3	0.34	0	0.64	0.8931	0.2012	0.8228	1.9306	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	20	28	48	658	740	1062	1174	3634	0.18	0.2	0.29	0.32	0	0.62	0.8752	0.1773	0.845	1.9473	3	3	1145	838	1141	1387	4511	0.24	0.19	0.28	0.3	0	0.58	0.9095	0.2109	0.8117	1.9722	15046	9208	5089	4092	13147	30357	6080	6513	9783	8805	3681	33864	2645	24095	4972	18640	1445	16326	22945	4769	15177	14949	34786	15408	13544	17929	2301	6710	5041	14225	26390	6126	34873	2526	3949	43940	12475	9251	16052	22948	10342	13492	10098	23209	2201	11085	12364	1826	3300	3602	16866	30489	1192	1871	1546	4695	656	10872	18227	7540	6539	873	1243	13123
GCF_026248685.1	NZ_CP111037	NZ_CP111037.1	Haladaptatus caseinilyticus strain ZJ1 plasmid unnamed1; complete sequence.	85092	85026	111204	113016	394338	0.22	0.22	0.28	0.29	0.57	0.9436	0.0085	0.9916	1.9864	181	188	369	71079	63725	92500	95321	322625	0.22	0.2	0.28	0.29	0.58	0.8957	0.1812	0.8426	1.97	223	178	181	359	69047	62151	90308	92819	314325	0.22	0.2	0.28	0.29	0.58	0.8956	0.1811	0.8429	1.9698	219	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	3	3	1152	843	1139	1377	4511	0.24	0.19	0.28	0.3	0	0.57	0.9097	0.2084	0.8138	1.9737	2011	1061	811	730	1954	3645	1011	1193	1236	1420	733	4214	573	3231	769	2436	289	2053	3137	950	1998	2002	4803	2332	1830	2315	484	1068	943	2140	3567	1181	4521	481	860	4891	1479	1082	2031	2780	1341	1568	1342	2532	296	1770	1862	285	464	650	2431	3881	267	329	257	876	97	1543	2415	1046	1088	98	164	1928
GCF_026248685.1	NZ_CP111038	NZ_CP111038.1	Haladaptatus caseinilyticus strain ZJ1 plasmid unnamed2; complete sequence.	35451	33583	36630	36681	142345	0.25	0.24	0.26	0.26	0.52	0.9497	0.0278	0.973	1.9991	82	48	130	26982	22549	27828	28454	105813	0.25	0.21	0.26	0.27	0.53	0.9004	0.2036	0.8242	1.98	144	78	46	124	26404	21944	27221	27724	103293	0.25	0.21	0.26	0.27	0.53	0.9003	0.2043	0.8233	1.9802	102	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	592	535	259	417	847	1440	501	598	320	472	551	1451	369	732	388	734	245	522	843	427	497	565	1279	1292	736	617	175	352	477	584	1018	557	915	162	526	1430	524	322	655	686	333	485	581	663	101	578	488	131	174	310	565	770	173	206	61	484	35	463	522	414	606	47	42	587
GCF_026248685.1	NZ_CP111039	NZ_CP111039.1	Haladaptatus caseinilyticus strain ZJ1 plasmid unnamed3; complete sequence.	20322	19067	20041	20785	80215	0.25	0.24	0.25	0.26	0.51	0.9515	0.0501	0.9512	1.9993	47	34	81	15106	12577	15238	15327	58248	0.25	0.22	0.26	0.26	0.52	0.9019	0.2203	0.811	1.977	56	47	33	80	15012	12512	15118	15228	57870	0.25	0.22	0.26	0.26	0.52	0.902	0.2195	0.8117	1.9771	56	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	362	268	144	249	473	737	301	377	170	249	327	762	229	416	240	402	149	297	430	231	283	328	766	695	397	353	113	165	303	329	583	296	517	123	346	738	288	158	349	383	233	264	347	366	61	359	282	95	85	180	279	424	124	106	50	288	16	249	253	212	341	27	37	286
GCF_026248685.1	NZ_CP111040	NZ_CP111040.1	Haladaptatus caseinilyticus strain ZJ1 plasmid unnamed4; complete sequence.	148657	147536	155561	155245	606999	0.24	0.24	0.26	0.26	0.51	0.9549	0.0048	0.9952	1.9996	245	268	513	117527	105411	122681	127373	472992	0.25	0.22	0.26	0.27	0.53	0.9068	0.1708	0.8497	1.9813	337	241	264	505	116046	103802	121421	126020	467289	0.25	0.22	0.26	0.27	0.53	0.9069	0.1717	0.849	1.9815	337	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	2	2	29	33	46	51	159	0.18	0.21	0.29	0.32	0	0.61	0.8778	0.1179	0.8898	1.9608	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2965	1839	1623	1882	4057	5210	2347	3135	1479	1984	2363	6311	1728	3742	1667	3013	1062	2388	3815	2062	2066	3358	5399	5171	2678	2745	1033	1629	2235	3298	4874	2658	4853	1130	2449	5722	2001	1427	2659	3244	1620	1777	2547	2984	371	3302	2387	503	715	1442	2721	3947	953	910	344	2261	102	1848	2612	1690	2467	149	254	2556
GCF_026248685.1	NZ_CP111041	NZ_CP111041.1	Haladaptatus caseinilyticus strain ZJ1 plasmid unnamed5; complete sequence.	131049	131586	146858	147972	557465	0.24	0.24	0.26	0.27	0.53	0.9536	0.0058	0.9942	1.9976	263	231	494	100747	90497	113531	117366	422141	0.24	0.21	0.27	0.28	0.54	0.9037	0.1831	0.8409	1.98	397	256	228	484	99365	89328	112046	115775	416514	0.24	0.21	0.27	0.28	0.54	0.9038	0.1829	0.841	1.98	393	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	0	1	16	19	18	21	74	0.22	0.26	0.24	0.28	0	0.53	0.8747	0.1626	0.8496	1.9931	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2821	1732	1412	1468	3379	4952	2148	2091	1511	1646	1667	5723	1168	3690	1418	2807	755	2251	3652	1490	1986	3026	5599	4447	2363	2730	856	1464	1710	2857	5221	2078	4994	814	1650	5352	1823	1437	2402	3214	1425	1557	1983	2849	397	2526	2262	385	713	1106	2470	3888	670	706	285	1575	105	1688	2448	1522	1901	159	220	2194
GCF_026248685.1	NZ_CP111042	NZ_CP111042.1	Haladaptatus caseinilyticus strain ZJ1 plasmid unnamed6; complete sequence.	93575	96669	100612	98384	389240	0.24	0.25	0.26	0.25	0.51	0.9545	0.0275	0.9729	1.9995	176	208	384	71995	64037	73517	77274	286823	0.25	0.22	0.26	0.27	0.53	0.9036	0.1959	0.8304	1.983	288	170	200	370	70717	63000	72204	76055	281976	0.25	0.22	0.26	0.27	0.53	0.904	0.1966	0.8298	1.9831	287	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	1	1	16	18	19	21	74	0.22	0.24	0.26	0.28	0	0.54	0.887	0.1088	0.8968	1.9931	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2022	1325	937	1200	2564	3316	1599	1914	785	1244	1405	3821	923	2136	1068	1836	645	1591	2208	1207	1191	2038	3377	3330	1653	1621	611	978	1320	2003	3016	1717	2852	591	1570	3297	1272	825	1554	1864	906	1031	1529	1710	268	1913	1431	273	472	856	1475	2166	544	593	165	1386	89	1068	1440	1061	1468	127	154	1441