GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_020618475.1	NZ_CP085335	NZ_CP085335.1	Haladaptatus halobius strain PSR5 chromosome 1; complete sequence.	536738	537135	899588	900575	2874036	0.19	0.19	0.31	0.31	0.63	0.9328	0.0009	0.9991	1.9534	1648	1647	3295	481946	398836	772331	789221	2442334	0.2	0.17	0.31	0.32	0.63	0.8789	0.2092	0.8219	1.9321	3481	1575	1570	3145	469008	387664	752479	768361	2377512	0.2	0.17	0.31	0.32	0.63	0.8789	0.2101	0.8214	1.9316	3033	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	1	2	137	85	212	231	665	0.21	0.13	0.32	0.35	0	0.67	0.8832	0.2717	0.7747	1.9032	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	24	24	48	656	733	1070	1177	3636	0.18	0.2	0.29	0.32	0	0.62	0.878	0.1721	0.8487	1.9464	0	3	3	1115	813	1163	1423	4514	0.23	0.18	0.28	0.31	0	0.58	0.9105	0.2063	0.8162	1.9698	14661	11682	3144	2573	6332	41233	4479	4358	8907	9122	3124	26603	1763	24384	3344	17704	1344	21279	25617	3020	17839	9803	39282	9294	14644	19809	2346	5077	3035	11536	24639	4307	41167	3019	2405	51840	14398	11859	18419	29252	11597	21835	6859	30538	3769	7095	14090	1665	2152	2005	17612	40223	1165	1601	1738	2350	822	13546	20066	3968	4672	761	1562	12170
GCF_020618475.1	NZ_CP085336	NZ_CP085336.1	Haladaptatus halobius strain PSR5 chromosome 2; complete sequence.	309523	305703	396275	398162	1409663	0.22	0.22	0.28	0.28	0.56	0.9538	0.0086	0.9915	1.9883	718	675	1393	231137	205817	302155	312876	1051985	0.22	0.2	0.28	0.3	0.58	0.8936	0.1888	0.8365	1.9611	1248	682	641	1323	223428	198957	293246	303169	1018800	0.22	0.2	0.28	0.3	0.58	0.8939	0.188	0.8371	1.9609	1116	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	1	2	30	29	55	55	169	0.18	0.17	0.33	0.33	0	0.65	0.89	0.0354	0.9655	1.9329	3	0	3	1124	814	1164	1411	4513	0.23	0.18	0.28	0.31	0	0.58	0.9102	0.2053	0.817	1.9707	6545	4486	2549	2866	5836	14967	4158	4467	3143	4537	3205	11824	2180	9353	2569	6880	1390	7130	10034	2697	6030	5777	14645	8018	6172	7100	1788	2821	2892	5660	10817	3979	14383	1756	3259	16231	5350	4005	6876	9850	4054	6182	3708	10272	1328	4991	5874	998	1414	1990	6214	12406	1299	1597	776	3053	327	5296	6999	2868	3674	350	646	5059
GCF_020618475.1	NZ_CP085337	NZ_CP085337.1	Haladaptatus halobius strain PSR5 plasmid unnamed1; complete sequence.	180030	175480	230061	230543	816114	0.22	0.22	0.28	0.28	0.56	0.9482	0.0138	0.9863	1.988	366	339	705	136746	118617	176730	181358	613451	0.23	0.2	0.28	0.29	0.57	0.8976	0.1741	0.8476	1.9657	555	351	329	680	134276	116437	173727	178191	602631	0.23	0.2	0.28	0.29	0.57	0.8977	0.1723	0.849	1.9657	445	NA	NA	NA	NA	NA	NA	NA	0	0	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	2	2	34	29	54	53	170	0.2	0.17	0.32	0.31	0	0.63	0.8984	0.0859	0.9211	1.9462	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	3989	3040	1547	1682	3432	8783	2365	2491	1989	2734	1891	6866	1309	5629	1504	4407	821	4028	5664	1477	3372	3564	8276	5022	3666	4370	1072	1730	1581	3333	6634	2322	8247	958	1882	9980	3390	2470	4254	6052	2416	3478	2347	5819	775	3069	3370	551	769	1144	3825	6974	794	937	469	1651	141	2982	4357	1723	2105	194	347	2816
GCF_020618475.1	NZ_CP085338	NZ_CP085338.1	Haladaptatus halobius strain PSR5 plasmid unnamed2; complete sequence.	141601	140211	159369	159086	600267	0.24	0.23	0.27	0.27	0.53	0.9523	0.0058	0.9942	1.9973	260	230	490	103828	91265	117264	118716	431073	0.24	0.21	0.27	0.28	0.55	0.9047	0.1702	0.8506	1.9784	225	249	223	472	101699	89542	114959	116203	422403	0.24	0.21	0.27	0.28	0.54	0.9051	0.1673	0.8529	1.9788	225	NA	NA	NA	NA	NA	NA	NA	0	0	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2592	2164	1290	1658	3139	5491	2096	2387	1274	1873	2098	4827	1388	3508	1265	2940	975	2526	3549	1507	1958	2587	5231	4375	2655	2608	974	1215	1672	2602	4483	2274	4904	863	2060	5545	2132	1362	2793	3393	1545	2202	2014	3259	491	2520	2066	458	668	1099	2272	3737	715	960	326	1834	107	1897	2398	1523	2024	153	236	2063
GCF_020618475.1	NZ_CP085339	NZ_CP085339.1	Haladaptatus halobius strain PSR5 plasmid unnamed3; complete sequence.	142147	144625	156027	156216	599015	0.24	0.24	0.26	0.26	0.52	0.9544	0.0092	0.9908	1.9987	284	287	571	93111	83930	102556	106130	385727	0.25	0.21	0.26	0.28	0.54	0.9012	0.1972	0.8296	1.9775	390	271	272	543	89999	81017	99277	102790	373083	0.25	0.21	0.26	0.28	0.54	0.9012	0.198	0.8291	1.9774	386	NA	NA	NA	NA	NA	NA	NA	0	0	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	3	0	3	47	51	65	70	233	0.2	0.22	0.28	0.3	0	0.58	0.8788	0.102	0.9044	1.9706	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2424	1639	1115	1415	3043	4783	1999	2452	1081	1651	1744	4634	1239	2986	1329	2372	794	2265	3253	1466	1899	2387	4856	3966	2373	2345	822	1232	1532	2282	4142	2055	4051	731	1860	4641	1705	1090	2194	2852	1286	1666	1736	2796	372	2255	2073	407	548	1042	1890	3286	654	701	294	1654	136	1562	2029	1199	1903	185	233	1754
GCF_020618475.1	NZ_CP085340	NZ_CP085340.1	Haladaptatus halobius strain PSR5 plasmid unnamed4; complete sequence.	116615	116937	133421	133214	500187	0.23	0.23	0.27	0.27	0.53	0.9536	0.0022	0.9978	1.9968	248	228	476	84323	74445	95364	99550	353682	0.24	0.21	0.27	0.28	0.55	0.9007	0.1968	0.8302	1.9756	295	232	215	447	80530	71077	91038	94885	337530	0.24	0.21	0.27	0.28	0.55	0.9007	0.1963	0.8307	1.9758	268	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2285	1604	995	1267	2590	4550	1720	1928	953	1605	1334	4166	1012	2812	1151	2288	682	2112	2815	1168	1712	2127	4186	3580	2136	2175	692	1009	1374	2031	3634	1789	3789	602	1622	4628	1604	1156	2034	2657	1255	1586	1418	2692	356	2035	1803	353	500	928	1790	3127	567	662	233	1458	95	1447	1912	1202	1654	153	199	1511
GCF_020618475.1	NZ_CP085341	NZ_CP085341.1	Haladaptatus halobius strain PSR5 plasmid unnamed5; complete sequence.	64409	66338	70039	69938	270724	0.24	0.25	0.26	0.26	0.52	0.9549	0.0155	0.9847	1.9991	125	137	262	40068	35114	43504	44877	163563	0.25	0.21	0.26	0.27	0.54	0.8982	0.1948	0.8312	1.98	221	122	130	252	39078	34122	42199	43661	159060	0.25	0.21	0.26	0.27	0.53	0.8983	0.1972	0.8294	1.9798	111	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	988	630	399	677	1300	2233	808	1035	405	653	773	2052	563	1329	642	971	327	1050	1202	660	835	918	2160	1853	1114	1011	288	497	689	858	1738	939	1637	275	927	2063	668	483	843	1175	582	761	733	1245	121	926	824	146	185	476	783	1403	293	284	114	687	59	631	740	535	916	89	104	715
GCF_020618475.1	NZ_CP085342	NZ_CP085342.1	Haladaptatus halobius strain PSR5 plasmid unnamed6; complete sequence.	47212	44921	47888	47902	187923	0.25	0.24	0.25	0.25	0.51	0.9511	0.025	0.9756	1.9995	99	83	182	31848	27720	32532	33741	125841	0.26	0.22	0.26	0.27	0.53	0.9015	0.1994	0.8286	1.9798	87	98	77	175	30611	26529	31317	32398	120855	0.26	0.22	0.26	0.27	0.53	0.9018	0.2009	0.8275	1.9796	83	NA	NA	NA	NA	NA	NA	NA	0	0	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	726	587	320	501	980	1597	661	839	339	539	646	1660	401	950	454	794	276	666	968	575	570	693	1442	1553	822	698	229	362	587	672	1272	759	1147	220	684	1528	553	354	675	841	420	529	601	795	108	745	624	135	132	380	554	935	271	241	102	595	39	519	567	414	684	69	67	619
GCF_020618475.1	NZ_CP085343	NZ_CP085343.1	Haladaptatus halobius strain PSR5 plasmid unnamed7; complete sequence.	5123	4824	5588	5925	21460	0.24	0.22	0.26	0.28	0.54	0.9179	0.0593	0.9424	1.9955	10	14	24	2758	2279	3173	3199	11409	0.24	0.2	0.28	0.28	0.55	0.898	0.2325	0.7993	1.9772	76	10	13	23	2660	2187	3052	3063	10962	0.24	0.2	0.28	0.28	0.55	0.8979	0.2384	0.7945	1.977	24	NA	NA	NA	NA	NA	NA	NA	0	0	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	71	62	18	59	62	206	40	59	33	42	38	133	52	88	53	60	24	82	62	39	39	57	147	122	84	78	21	26	32	38	79	53	144	13	47	153	72	32	71	100	54	96	46	80	10	53	35	7	19	46	40	77	11	21	2	40	4	66	46	59	66	9	22	53