GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_020700235.1	NZ_CP085301	NZ_CP085301.1	Haladaptatus pallidirubidus strain YIM 93656 chromosome; complete genome.	788300	787824	1121312	1124031	3821467	0.21	0.21	0.29	0.29	0.59	0.9367	0.0015	0.9985	1.9778	2057	2072	4129	701905	580566	958168	984223	3224862	0.22	0.18	0.29	0.3	0.6	0.8883	0.21	0.8207	1.9574	3690	1963	2003	3966	684870	565559	935211	960280	3145920	0.22	0.18	0.29	0.3	0.59	0.8883	0.2108	0.8201	1.9574	3292	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2	2	147	107	209	234	697	0.21	0.15	0.3	0.34	0	0.64	0.8846	0.1977	0.83	1.9328	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	27	23	50	688	783	1095	1216	3782	0.18	0.21	0.29	0.32	0	0.61	0.8774	0.1769	0.8448	1.9495	9	9	3434	2538	3404	4158	13534	0.24	0.19	0.28	0.3	0	0.58	0.9082	0.2196	0.8042	1.972	20486	11711	5857	5043	14363	41366	7151	11930	13195	12501	6737	47789	3694	31777	6166	24678	3080	23437	30994	7665	22257	15209	45982	17767	18693	25159	3281	9422	5721	20189	33114	8858	45383	3688	5227	60361	17668	12701	23133	31967	14638	22699	14577	36657	4186	16221	15319	3036	3752	3901	23323	45554	2267	2384	2087	5046	996	14681	25935	6233	9680	1276	1694	17098
GCF_020700235.1	NZ_CP085302	NZ_CP085302.1	Haladaptatus pallidirubidus strain YIM 93656 plasmid unnamed1; complete sequence.	135718	135020	150034	151621	572393	0.24	0.24	0.26	0.26	0.53	0.9541	0.0078	0.9922	1.9979	291	273	564	98546	85774	108648	112976	405944	0.25	0.21	0.26	0.28	0.54	0.9005	0.197	0.8295	1.9771	486	276	255	531	94806	82257	104178	108279	389520	0.25	0.21	0.26	0.28	0.54	0.9007	0.1984	0.8284	1.9771	452	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2	1	3	49	53	64	67	233	0.21	0.23	0.27	0.29	0	0.56	0.8962	0.0611	0.9419	1.9823	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2696	1804	1200	1524	2980	5316	1983	2229	1197	1644	1737	5096	1215	3116	1295	2563	832	2284	3366	1300	1991	2490	4865	4132	2512	2446	797	1223	1463	2400	4198	1986	4432	750	1983	5397	1909	1288	2347	3004	1376	1616	1808	2983	504	2305	2032	468	613	1109	2043	3405	661	752	308	1686	108	1628	2072	1285	1896	176	247	1769
GCF_020700235.1	NZ_CP085303	NZ_CP085303.1	Haladaptatus pallidirubidus strain YIM 93656 plasmid unnamed2; complete sequence.	94412	93400	88796	88499	365107	0.26	0.26	0.24	0.24	0.49	0.9563	0.0071	0.993	1.9994	145	146	291	70188	63092	65089	66866	265235	0.26	0.24	0.25	0.25	0.5	0.9064	0.1781	0.8449	1.9806	124	140	136	276	67973	60948	62971	64632	256524	0.27	0.23	0.25	0.25	0.5	0.9066	0.1775	0.8455	1.9804	120	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	0	1	16	20	17	21	74	0.22	0.27	0.23	0.28	0	0.51	0.8809	0.2164	0.8048	1.991	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1531	1062	1044	1316	2546	2466	1603	2203	684	1037	1757	3375	1273	1766	1090	1689	858	1228	1787	1371	993	1897	2509	3157	1510	1261	593	874	1489	1780	2261	1945	2218	712	1955	2461	943	648	1178	1460	861	983	1685	1562	202	2022	1101	358	417	893	1166	1704	748	635	153	1493	67	819	1032	896	1743	95	114	1229
GCF_020700235.1	NZ_CP085304	NZ_CP085304.1	Haladaptatus pallidirubidus strain YIM 93656 plasmid unnamed3; complete sequence.	66506	67179	71393	71182	276260	0.24	0.24	0.26	0.26	0.52	0.955	0.0065	0.9935	1.9992	138	134	272	47946	41339	49348	51430	190063	0.25	0.22	0.26	0.27	0.53	0.9004	0.2114	0.8187	1.9774	258	127	130	257	46587	40095	47813	49837	184332	0.26	0.22	0.26	0.27	0.53	0.9009	0.2128	0.8174	1.9778	175	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	0	1	16	15	27	27	85	0.19	0.18	0.32	0.32	0	0.64	0.8929	0.0323	0.9688	1.9462	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1221	913	556	728	1471	2465	932	1189	561	842	992	2427	655	1418	723	1250	422	1055	1433	699	866	1106	2187	2149	1135	1109	441	551	810	1132	2050	1046	1809	373	1022	2409	842	592	1091	1287	662	814	955	1217	245	1154	925	241	298	593	958	1383	387	362	153	780	63	797	816	666	941	97	97	881
GCF_020700235.1	NZ_CP085305	NZ_CP085305.1	Haladaptatus pallidirubidus strain YIM 93656 plasmid unnamed4; complete sequence.	118150	118417	133544	133941	504052	0.23	0.23	0.26	0.27	0.53	0.954	0.0026	0.9974	1.9973	224	218	442	86113	77015	99613	102473	365214	0.24	0.21	0.27	0.28	0.55	0.9018	0.1764	0.8448	1.9786	545	216	210	426	84194	75329	97312	100192	357027	0.24	0.21	0.27	0.28	0.55	0.9022	0.1751	0.8459	1.9787	391	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2349	1604	1072	1210	2640	4353	1741	2081	1155	1607	1422	4645	1039	3068	1048	2599	617	1984	3098	1226	1821	2434	4730	3424	2037	2319	716	1145	1300	2396	4044	1837	4272	740	1464	4879	1620	1208	2254	2884	1386	1645	1587	2892	327	2346	1845	346	507	883	2136	3609	574	616	195	1339	102	1481	2235	1191	1639	141	183	1722
GCF_020700235.1	NZ_CP085306	NZ_CP085306.1	Haladaptatus pallidirubidus strain YIM 93656 plasmid unnamed5; complete sequence.	27577	28217	29621	29325	114740	0.24	0.25	0.26	0.26	0.51	0.9512	0.0165	0.9837	1.9994	51	52	103	19890	17488	20570	21521	79469	0.25	0.22	0.26	0.27	0.53	0.9025	0.173	0.848	1.98	81	48	50	98	19141	16871	19825	20678	76515	0.25	0.22	0.26	0.27	0.53	0.9027	0.173	0.8483	1.9799	35	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	1	1	15	17	20	22	74	0.2	0.23	0.27	0.3	0	0.57	0.8747	0.1101	0.8957	1.9846	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	534	365	219	289	595	982	434	512	215	334	382	1114	260	550	268	465	152	403	634	316	339	510	940	902	503	392	155	249	390	484	796	456	748	149	410	932	347	239	460	531	254	404	400	553	77	505	344	79	134	229	349	590	156	168	53	348	26	311	379	289	441	34	38	389
GCF_020700235.1	NZ_CP085307	NZ_CP085307.1	Haladaptatus pallidirubidus strain YIM 93656 plasmid unnamed6; complete sequence.	148383	146547	161446	160126	616502	0.24	0.24	0.26	0.26	0.52	0.9542	0.0103	0.9897	1.9986	263	282	545	109637	98674	119271	124008	451590	0.25	0.22	0.26	0.27	0.53	0.9051	0.1828	0.8402	1.981	273	253	269	522	107371	96559	116728	121401	442059	0.25	0.22	0.26	0.27	0.53	0.9058	0.1826	0.8402	1.9812	265	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	3057	1929	1523	1770	3670	5519	2289	2888	1311	1954	2031	5680	1436	3469	1473	2859	895	2669	3796	1750	2092	2976	5508	4717	2602	2626	994	1490	1790	2970	5057	2449	4729	939	2203	5503	2018	1450	2513	3237	1534	1899	2101	3177	466	2808	2357	430	701	1168	2301	3793	889	891	262	1988	122	1815	2422	1511	2310	171	229	2177