Assembly Assembly | Locus_ID Locus_ID | Version Version | Definition Sequence description | bp_chromo_A Total number of 'A' nucleotides in the whole sequence | bp_chromo_T Total number of 'T' nucleotides in the whole sequence | bp_chromo_C Total number of 'C' nucleotides in the whole sequence | bp_chromo_G Total number of 'G' nucleotides in the whole sequence | bp_chromo_N Total number of 'N' nucleotides in the whole sequence | bp_chromo_tot Total number of nucleotides in the whole sequence | fr_chromo_A Frequency of 'A' nucleotides in the whole sequence | fr_chromo_T Frequency of 'T' nucleotides in the whole sequence | fr_chromo_C Frequency of 'C' nucleotides in the whole sequence | fr_chromo_G Frequency of 'G' nucleotides in the whole sequence | fr_chromo_N Frequency of 'N' nucleotides in the whole sequence | GC_chromo Percentage of āGā + āCā nucleotides in the whole sequence | topo_entropy_chromo Topological entropy of the whole sequence | chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence | chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee | shannon_chromo Shannon entropy of the whole sequence | n_gene_pos Number of genes in the positive strand | n_gene_neg Number of genes in the negative strand | n_gene_tot Total number of genes in the chromosome | bp_gene_A Number of 'A' bases in total genes | bp_gene_T Number of 'T' bases in total genes | bp_gene_C Number of 'C' bases in total genes | bp_gene_G Number of 'G' bases in total genes | bp_gene_N Number of 'N' bases in total genes | bp_gene_tot Total number of bases in total genes | fr_gene_A Frequency of 'A' bases among total gene bases | fr_gene_T Frequency of 'T' bases among total gene bases | fr_gene_C Frequency of 'C' bases among total gene bases | fr_gene_G Frequency of 'G' bases among total gene bases | fr_gene_N Frequency of 'N' bases among total gene bases | GC_gene Percentage of 'G' and 'C' bases in total genes | topo_entropy_gene Topological entropy calculated from total gene sequences | chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes | chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes | shannon_gene Shannon entropy score for total genes | bp_gene_overlap_tot Number of bases overlapping between genes on two strands | n_cds_pos Number of CDS in the positive strand | n_cds_neg Number of CDS in the negative strand | n_cds_tot Total number of CDS in the chromosome | bp_cds_A Number of 'A' bases in total CDS (coding sequences) | bp_cds_T Number of 'T' bases in total CDS | bp_cds_C Number of 'C' bases in total CDS | bp_cds_G Number of 'G' bases in total CDS | bp_cds_N Number of 'N' bases in total CDS | bp_cds_tot Total bases in total CDS | fr_cds_A Frequency of 'A' bases among total CDS bases | fr_cds_T Frequency of 'T' bases among total CDS bases | fr_cds_C Frequency of 'C' bases among total CDS bases | fr_cds_G Frequency of 'G' bases among total CDS bases | fr_cds_N Frequency of 'N' bases among total CDS bases | GC_cds Percentage of 'G' and 'C' bases in total CDS | topo_entropy_cds Topological entropy calculated from total CDS sequences | chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS | chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS | shannon_cds Shannon entropy score for total CDS | bp_cds_overlap_tot Number of bases overlapping between CDS on two strands | bp_cds_intron_A Number of 'A' bases in total introns between CDS | bp_cds_intron_T Number of 'T' bases in total introns between CDS | bp_cds_intron_C Number of 'C' bases in total introns between CDS | bp_cds_intron_G Number of 'G' bases in total introns between CDS | bp_cds_intron_N Number of 'N' bases in total introns between CDS | bp_cds_intron_tot Total bases in total introns between CDS | fr_cds_intron_A Frequency of 'A' bases in total introns between CDS | fr_cds_intron_T Frequency of 'T' bases in total introns between CDS | fr_cds_intron_C Frequency of 'C' bases in total introns between CDS | fr_cds_intron_G Frequency of 'G' bases in total introns between CDS | fr_cds_intron_N Frequency of 'N' bases in total introns between CDS | GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS | topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS | chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS | chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS | shannon_cds_intron Shannon entropy score for total introns between CDS | bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands | n_ncRNA_pos Number of ncRNA in the positive strand | n_ncRNA_neg Number of ncRNA in the negative strand | n_ncRNA_tot Total number of ncRNA in the chromosome | bp_ncRNA_A Number of 'A' bases in total ncRNA | bp_ncRNA_T bp_ncRNA_T | bp_ncRNA_C Number of 'C' bases in total ncRNA | bp_ncRNA_G Number of 'G' bases in total ncRNA | bp_ncRNA_N Number of 'N' bases in total ncRNA | bp_ncRNA_tot Total bases in total ncRNA | fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases | fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases | fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases | fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases | fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases | GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA | topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences | chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA | chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA | shannon_ncRNA Shannon entropy score for total ncRNA | bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands | bp_nc_intron_A Number of 'A' bases in total introns between ncRNA | bp_nc_intron_T Number of 'T' bases in total introns between ncRNA | bp_nc_intron_C Number of 'C' bases in total introns between ncRNA | bp_nc_intron_G Number of 'G' bases in total introns between ncRNA | bp_nc_intron_N Number of 'N' bases in total introns between ncRNA | bp_nc_intron_tot Total bases in total introns between ncRNA | fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA | fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA | fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA | fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA | fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA | GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA | topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA | chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA | chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA | shannon_nc_intron Shannon entropy score for total introns between ncRNA | bp_nc_intron_overlap_tot Number of bases overlapping between introns between ncRNA on two strands | n_tRNA_pos Number of tRNA in the positive strand | n_tRNA_neg Number of tRNA in the negative strand | n_tRNA_tot Total number of tRNA in the chromosome | bp_tRNA_A Number of 'A' bases in total tRNA | bp_tRNA_T Number of 'T' bases in total tRNA | bp_tRNA_C Number of 'C' bases in total tRNA | bp_tRNA_G Number of 'G' bases in total tRNA | bp_tRNA_N Number of 'N' bases in total tRNA | bp_tRNA_tot Total bases in total tRNA | fr_tRNA_A Frequency of 'A' bases among total tRNA bases | fr_tRNA_T Frequency of 'T' bases among total tRNA bases | fr_tRNA_C Frequency of 'C' bases among total tRNA bases | fr_tRNA_G Frequency of 'G' bases among total tRNA bases | fr_tRNA_N Frequency of 'N' bases among total tRNA bases | GC_tRNA Percentage of 'G' and 'C' bases in total tRNA | topo_entropy_tRNA Topological entropy calculated from total tRNA sequences | chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA | chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA | shannon_tRNA Shannon entropy score for total tRNA | bp_tRNA_overlap_tot Number of bases overlapping between tRNA on two strands | n_rRNA_pos Number of rRNA in the positive strand | n_rRNA_neg Number of rRNA in the negative strand | n_rRNA_tot Total number of rRNA in the chromosome | bp_rRNA_A Number of 'A' bases in total rRNA | bp_rRNA_T Number of 'T' bases in total rRNA | bp_rRNA_C Number of 'C' bases in total rRNA | bp_rRNA_G Number of 'G' bases in total rRNA | bp_rRNA_N Number of 'N' bases in total rRNA | bp_rRNA_tot Total bases in total rRNA | fr_rRNA_A Frequency of 'A' bases among total rRNA bases | fr_rRNA_T Frequency of 'T' bases among total rRNA bases | fr_rRNA_C Frequency of 'C' bases among total rRNA bases | fr_rRNA_G Frequency of 'G' bases among total rRNA bases | fr_rRNA_N Frequency of 'N' bases among total rRNA bases | GC_rRNA Percentage of 'G' and 'C' bases in total rRNA | topo_entropy_rRNA Topological entropy calculated from total rRNA sequences | chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA | chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA | shannon_rRNA Shannon entropy score for total rRNA | bp_rRNA_overlap_tot Number of bases overlapping between rRNA on two strands | ATG ATG | AAG AAG | GTA GTA | ACT ACT | GCA GCA | GAG GAG | GCT GCT | ATT ATT | TCC TCC | TGG TGG | AAT AAT | GAA GAA | TCA TCA | ACG ACG | AGT AGT | AAC AAC | TCT TCT | GTG GTG | TTC TTC | TTT TTT | CTG CTG | GGT GGT | CTC CTC | GAT GAT | CAG CAG | ACC ACC | CTA CTA | TTG TTG | TAT TAT | GGA GGA | ATC ATC | CTT CTT | GTC GTC | ATA ATA | ACA ACA | GAC GAC | CAC CAC | CCC CCC | TAC TAC | GCC GCC | AGC AGC | CGC CGC | AAA AAA | GGC GGC | TGC TGC | GTT GTT | GGG GGG | AGA AGA | TGT TGT | CAT CAT | TCG TCG | GCG GCG | TTA TTA | CCT CCT | AGG AGG | CCA CCA | TAG TAG | CGG CGG | CCG CCG | CGT CGT | CAA CAA | TAA TAA | TGA TGA | CGA CGA |
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GCF_037081775.1 | NZ_JBAMHQ010000001 | NZ_JBAMHQ010000001.1 | Haladaptatus sp. ZSTT2 ZSTT2_ctg01; whole genome shotgun sequence. | 533334 | 535007 | 832537 | 836295 | 0 | 2737173 | 0.19 | 0.2 | 0.3 | 0.31 | 0 | 0.61 | 0.9386 | 0.0038 | 0.9962 | 1.965 | 1448 | 1537 | 2985 | 513524 | 429522 | 794339 | 734356 | 0 | 2471741 | 0.21 | 0.18 | 0.32 | 0.3 | 0 | 0.61 | 0.8905 | 0.213 | 0.8174 | 1.9477 | 1936 | 1405 | 1494 | 2899 | 506950 | 423864 | 785358 | 725396 | 0 | 2441568 | 0.21 | 0.18 | 0.32 | 0.3 | 0 | 0.61 | 0.8906 | 0.2138 | 0.8168 | 1.9475 | 1812 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 1 | 1 | 2 | 133 | 87 | 193 | 217 | 0 | 630 | 0.21 | 0.14 | 0.31 | 0.34 | 0 | 0.65 | 0.8831 | 0.2649 | 0.787 | 1.9146 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 25 | 22 | 47 | 655 | 732 | 1025 | 1139 | 0 | 3551 | 0.18 | 0.21 | 0.29 | 0.32 | 0 | 0.61 | 0.8753 | 0.179 | 0.8423 | 1.9504 | 0 | 3 | 0 | 3 | 1164 | 860 | 1088 | 1397 | 0 | 4509 | 0.25 | 0.18 | 0.26 | 0.32 | 0 | 0.57 | 0.9125 | 0.2732 | 0.7625 | 1.9683 | 0 | 16161 | 10069 | 3882 | 3184 | 18347 | 32622 | 5660 | 9916 | 6702 | 9284 | 3290 | 31021 | 3654 | 23942 | 3785 | 18611 | 3971 | 20823 | 24389 | 5844 | 14286 | 9874 | 46335 | 8335 | 15294 | 22898 | 1218 | 5121 | 3630 | 6723 | 28406 | 6288 | 37398 | 1366 | 4213 | 50304 | 16003 | 11476 | 18743 | 30685 | 10570 | 25235 | 10824 | 37668 | 2326 | 8183 | 12791 | 1774 | 3465 | 1569 | 15556 | 32285 | 2518 | 1922 | 648 | 7342 | 632 | 8377 | 16276 | 4712 | 6957 | 1077 | 1190 | 6206 |
GCF_037081775.1 | NZ_JBAMHQ010000002 | NZ_JBAMHQ010000002.1 | Haladaptatus sp. ZSTT2 ZSTT2_ctg02; whole genome shotgun sequence. | 85743 | 87485 | 115069 | 115961 | 0 | 404258 | 0.21 | 0.22 | 0.28 | 0.29 | 0 | 0.57 | 0.9481 | 0.0139 | 0.9862 | 1.9852 | 162 | 179 | 341 | 78463 | 64188 | 101234 | 99293 | 0 | 343178 | 0.23 | 0.19 | 0.29 | 0.29 | 0 | 0.58 | 0.9 | 0.1912 | 0.834 | 1.9648 | 390 | 158 | 176 | 334 | 77484 | 63361 | 99981 | 97982 | 0 | 338808 | 0.23 | 0.19 | 0.29 | 0.29 | 0 | 0.58 | 0.9 | 0.1916 | 0.8337 | 1.9647 | 307 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 2139 | 1515 | 717 | 784 | 2607 | 4632 | 1072 | 1654 | 915 | 1319 | 913 | 4555 | 849 | 3144 | 857 | 2554 | 716 | 2457 | 3237 | 795 | 1848 | 1658 | 5301 | 2137 | 2068 | 2737 | 357 | 992 | 798 | 1407 | 3768 | 1182 | 4279 | 352 | 978 | 6079 | 2035 | 1331 | 2578 | 3073 | 1491 | 2366 | 1711 | 3973 | 337 | 1413 | 2023 | 386 | 593 | 528 | 2102 | 3853 | 457 | 441 | 177 | 1380 | 52 | 1387 | 2126 | 850 | 1383 | 129 | 153 | 1236 |
GCF_037081775.1 | NZ_JBAMHQ010000003 | NZ_JBAMHQ010000003.1 | Haladaptatus sp. ZSTT2 ZSTT2_ctg03; whole genome shotgun sequence. | 11251 | 12408 | 14532 | 13872 | 0 | 52063 | 0.22 | 0.24 | 0.28 | 0.27 | 0 | 0.55 | 0.9379 | 0.0721 | 0.9307 | 1.993 | 13 | 39 | 52 | 9936 | 8095 | 11396 | 11616 | 0 | 41043 | 0.25 | 0.19 | 0.28 | 0.28 | 0 | 0.56 | 0.8992 | 0.185 | 0.8409 | 1.9686 | 52 | 12 | 38 | 50 | 9801 | 7996 | 11243 | 11451 | 0 | 40491 | 0.25 | 0.19 | 0.28 | 0.28 | 0 | 0.56 | 0.9001 | 0.184 | 0.8418 | 1.9684 | 52 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 161 | 214 | 106 | 173 | 277 | 681 | 220 | 194 | 136 | 182 | 144 | 520 | 120 | 310 | 128 | 293 | 115 | 202 | 355 | 75 | 236 | 200 | 541 | 469 | 281 | 272 | 85 | 90 | 155 | 205 | 374 | 173 | 402 | 55 | 164 | 707 | 227 | 126 | 315 | 312 | 167 | 209 | 162 | 252 | 63 | 207 | 218 | 44 | 80 | 102 | 218 | 381 | 56 | 71 | 35 | 165 | 16 | 241 | 194 | 168 | 200 | 13 | 21 | 219 |
GCF_037081775.1 | NZ_JBAMHQ010000004 | NZ_JBAMHQ010000004.1 | Haladaptatus sp. ZSTT2 ZSTT2_ctg04; whole genome shotgun sequence. | 8639 | 8095 | 10428 | 10101 | 0 | 37263 | 0.23 | 0.22 | 0.28 | 0.27 | 0 | 0.55 | 0.9323 | 0.0484 | 0.9528 | 1.9921 | 18 | 17 | 35 | 7440 | 6304 | 8541 | 9020 | 0 | 31305 | 0.23 | 0.21 | 0.27 | 0.29 | 0 | 0.56 | 0.8948 | 0.1998 | 0.8285 | 1.9548 | 48 | 18 | 17 | 35 | 7440 | 6304 | 8541 | 9020 | 0 | 31305 | 0.23 | 0.21 | 0.27 | 0.29 | 0 | 0.56 | 0.8948 | 0.1998 | 0.8285 | 1.9548 | 48 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 159 | 198 | 65 | 92 | 190 | 472 | 119 | 197 | 68 | 161 | 140 | 379 | 108 | 246 | 87 | 248 | 86 | 228 | 315 | 84 | 174 | 166 | 384 | 249 | 190 | 204 | 42 | 108 | 110 | 131 | 268 | 127 | 347 | 59 | 88 | 582 | 158 | 127 | 222 | 206 | 135 | 210 | 190 | 334 | 59 | 150 | 169 | 34 | 41 | 58 | 215 | 335 | 68 | 58 | 29 | 111 | 6 | 136 | 162 | 85 | 125 | 8 | 21 | 112 |