GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_000196895.1	NC_014297	NC_014297.1	Halalkalicoccus jeotgali B3; complete sequence.	491706	492604	912017	912778	2809105	0.18	0.18	0.32	0.32	0.65	0.6668	0.0013	0.9987	1.9344	1504	1554	3058	456332	403176	818032	839398	2516938	0.18	0.16	0.32	0.33	0.65	0.8762	0.1952	0.8335	1.9137	2142	1467	1509	2976	450067	398042	808596	829445	2486150	0.18	0.16	0.32	0.33	0.66	0.876	0.1955	0.8332	1.9131	2044	NA	NA	NA	NA	NA	NA	NA	0	0	NA	1	1	2	121	66	226	244	657	0.18	0.1	0.34	0.37	0	0.72	0.8666	0.3238	0.7498	1.8389	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	25	23	48	640	719	1082	1189	3630	0.18	0.2	0.3	0.33	0	0.63	0.8774	0.1656	0.8548	1.9419	3	3	1093	814	1161	1440	4508	0.23	0.16	0.29	0.32	0	0.6	0.8985	0.2693	0.766	1.9507	14937	9793	2959	2361	7095	56996	3626	2231	7184	9320	1772	19827	1613	21726	2972	16566	1140	15754	23219	4690	23239	8455	40781	12507	15001	24120	1749	4794	4156	8198	33800	4469	47956	1152	2461	48021	14521	18112	18644	37193	12274	22716	4785	35528	2197	5188	22202	1411	4207	2139	19771	40981	810	1251	1639	2260	843	19043	17361	4428	3056	548	1585	7381
GCF_000196895.1	NC_014298	NC_014298.1	Halalkalicoccus jeotgali B3 plasmid 1; complete sequence.	90434	91315	111724	112812	406285	0.22	0.22	0.27	0.28	0.55	0.9495	0.0097	0.9904	1.992	165	172	337	66351	58438	81285	83908	289982	0.23	0.2	0.28	0.29	0.56	0.8993	0.1877	0.8375	1.9712	205	160	167	327	65639	57716	80353	83008	286716	0.23	0.2	0.28	0.29	0.56	0.8994	0.1889	0.8365	1.9709	205	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	0	1	16	19	19	20	74	0.22	0.26	0.26	0.27	0	0.53	0.8617	0.1114	0.8961	1.9951	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1688	1129	793	1024	1933	4716	1449	1265	852	1189	947	3434	748	2514	842	1896	505	1438	2402	845	1669	1647	3919	3305	2013	1996	577	716	1112	1609	3339	1325	3575	402	1179	4154	1327	1195	1799	2689	1138	1421	1004	2427	258	1633	1700	287	439	669	1665	2823	394	532	206	1015	75	1433	1707	946	1085	99	153	1307
GCF_000196895.1	NC_014299	NC_014299.1	Halalkalicoccus jeotgali B3 plasmid 2; complete sequence.	85319	81313	97985	98917	363534	0.23	0.22	0.27	0.27	0.54	0.9505	0.0288	0.9718	1.9948	198	145	343	63999	55185	72639	76569	268392	0.24	0.2	0.27	0.29	0.55	0.9001	0.2032	0.8254	1.9718	463	192	144	336	63170	54456	71513	75434	264573	0.24	0.2	0.27	0.29	0.55	0.9001	0.2032	0.8252	1.9719	440	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1845	1281	813	1026	1796	4333	1353	1460	747	1129	1048	3306	877	2061	865	1854	537	1343	2164	859	1416	1540	3328	2824	1789	1576	614	721	993	1512	3035	1297	3002	454	1161	3829	1219	919	1679	2280	1004	1279	1029	2220	248	1460	1551	308	377	646	1399	2315	419	546	185	1008	81	1273	1492	910	1109	105	150	1192
GCF_000196895.1	NC_014300	NC_014300.1	Halalkalicoccus jeotgali B3 plasmid 3; complete sequence.	8742	9578	13076	13180	44576	0.2	0.21	0.29	0.3	0.59	0.9308	0.0496	0.9524	1.9764	15	24	39	7519	6465	10661	10881	35526	0.21	0.19	0.29	0.31	0.6	0.8915	0.2267	0.8089	1.9538	35	15	22	37	7434	6360	10498	10712	35004	0.22	0.19	0.29	0.3	0.6	0.8928	0.2175	0.8149	1.9559	35	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	280	199	49	94	159	600	162	113	95	158	79	336	62	337	105	262	38	210	307	62	224	182	576	282	284	272	42	70	80	129	422	98	480	34	81	640	191	155	226	406	159	239	115	422	54	141	210	21	65	46	264	407	21	44	23	74	5	198	224	101	100	16	16	122
GCF_000196895.1	NC_014301	NC_014301.1	Halalkalicoccus jeotgali B3 plasmid 4; complete sequence.	10580	9466	11979	12434	44459	0.24	0.21	0.27	0.28	0.55	0.9393	0.0742	0.9291	1.9919	23	19	42	8747	6738	9546	10222	35253	0.26	0.19	0.27	0.29	0.56	0.8985	0.245	0.7961	1.9659	38	23	19	42	8747	6738	9546	10222	35253	0.26	0.19	0.27	0.29	0.56	0.8985	0.245	0.7961	1.9659	38	NA	NA	NA	NA	NA	NA	NA	0	0	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	243	234	90	108	204	659	170	171	98	130	142	442	108	325	133	285	64	163	278	83	174	182	494	341	259	192	53	84	136	160	454	142	352	54	139	600	162	113	253	263	148	205	156	275	23	171	225	43	32	73	184	360	55	54	33	113	8	205	192	105	155	11	23	165
GCF_000196895.1	NC_014302	NC_014302.1	Halalkalicoccus jeotgali B3 plasmid 5; complete sequence.	6071	6352	5666	5638	23727	0.26	0.27	0.24	0.24	0.48	0.9451	0.0251	0.9754	1.9982	9	12	21	4431	3424	3354	3926	15135	0.3	0.22	0.22	0.26	0.49	0.899	0.2763	0.7693	1.9745	4	9	12	21	4431	3424	3354	3926	15135	0.3	0.22	0.22	0.26	0.49	0.899	0.2763	0.7693	1.9745	4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	93	131	64	71	117	250	78	129	53	57	109	283	56	87	50	92	62	54	116	92	55	75	86	202	92	72	45	72	99	83	86	92	92	67	76	237	58	52	83	86	49	46	112	68	14	83	79	43	19	78	43	70	48	36	28	66	6	63	45	40	84	5	10	56
GCF_000196895.1	NC_014303	NC_014303.1	Halalkalicoccus jeotgali B3 plasmid 6; complete sequence.	1475	1264	2005	2207	6951	0.21	0.18	0.29	0.32	0.61	0.9164	0.125	0.8827	1.9647	8	1	9	800	481	1000	1241	3522	0.23	0.15	0.27	0.35	0.62	0.8783	0.3812	0.6958	1.9138	12	8	1	9	800	481	1000	1241	3522	0.23	0.15	0.27	0.35	0.62	0.8783	0.3812	0.6958	1.9138	12	NA	NA	NA	NA	NA	NA	NA	0	0	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	22	22	8	5	6	73	14	9	9	19	6	31	13	45	8	28	2	21	7	4	24	12	31	28	24	21	1	2	8	19	30	6	28	8	14	69	17	12	9	35	31	27	8	38	5	6	28	13	4	3	27	52	8	6	13	11	3	46	37	16	5	1	8	27