GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	fr_cds_N Frequency of 'N' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_037081715.1	NZ_JAZDDH010000001	NZ_JAZDDH010000001.1	Halalkalicoccus sp. CG83 CG83_ctg01; whole genome shotgun sequence.	438528	441342	850978	845350	2576198	0.17	0.17	0.33	0.33	0.66	0.9289	0.0065	0.9935	1.9263	1302	1361	2663	389483	341260	724394	746600	2201737	0.18	0.16	0.33	0.34	0.66	0.8698	0.1949	0.8337	1.9043	1735	1266	1324	2590	383413	336041	713945	735493	2168892	0.18	0.16	0.33	0.34	0	0.66	0.8696	0.1954	0.8332	1.9038	1669	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	1	1	53	36	106	118	313	0.17	0.12	0.34	0.38	0	0.72	0.8792	0.2446	0.7888	1.8523	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	20	17	37	495	557	834	924	2810	0.18	0.2	0.3	0.33	0	0.62	0.8717	0.1709	0.8517	1.9408	3	3	1095	789	1180	1449	4513	0.24	0.16	0.28	0.32	0	0.6	0.8984	0.2844	0.7601	1.9514	12918	9632	2537	1539	4417	56848	2978	1618	6742	8464	1235	11959	1339	21122	1748	14818	820	15124	22414	1950	20112	6707	38796	9590	13661	19767	1579	2555	2562	8241	29024	2863	42326	1050	1256	44667	13185	14250	17355	30415	11365	19094	2228	32999	2312	3921	15206	1303	2894	1586	16623	37773	610	1087	1850	1637	727	17333	17098	4316	1545	367	1496	7411
GCF_037081715.1	NZ_JAZDDH010000002	NZ_JAZDDH010000002.1	Halalkalicoccus sp. CG83 CG83_ctg02; whole genome shotgun sequence.	109779	112186	230210	225025	677200	0.16	0.17	0.34	0.33	0.67	0.9185	0.0222	0.978	1.9125	352	373	725	102366	85586	196075	203591	587618	0.18	0.15	0.33	0.35	0.67	0.8657	0.1999	0.8297	1.8959	263	340	363	703	100725	84541	193315	200623	579204	0.18	0.15	0.33	0.35	0	0.68	0.8654	0.199	0.8303	1.8953	254	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	0	1	72	29	116	128	345	0.21	0.08	0.34	0.37	0	0.71	0.8541	0.4749	0.6545	1.8315	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	5	5	10	135	154	217	240	746	0.18	0.21	0.29	0.32	0	0.61	0.8906	0.1688	0.8511	1.9519	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	3289	2726	505	277	938	16798	591	261	1840	2066	196	3012	243	5216	333	3902	143	4062	5745	377	5296	1481	10143	2229	3713	5420	279	553	487	1967	7672	614	11606	187	218	12919	3626	4175	4554	8499	3110	5745	454	9534	654	828	4083	281	830	340	4447	10333	83	212	470	292	208	4788	4381	1117	267	103	392	1958
GCF_037081715.1	NZ_JAZDDH010000003	NZ_JAZDDH010000003.1	Halalkalicoccus sp. CG83 CG83_ctg03; whole genome shotgun sequence.	57006	56120	71866	72750	257742	0.22	0.22	0.28	0.28	0.56	0.9402	0.0139	0.9862	1.9892	140	110	250	39836	34367	50457	52413	177073	0.23	0.2	0.28	0.29	0.57	0.8968	0.1802	0.8437	1.9688	124	131	99	230	37392	32183	47350	49086	166011	0.23	0.2	0.28	0.29	0	0.57	0.8973	0.179	0.8447	1.969	100	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	0	1	16	19	19	20	74	0.22	0.26	0.26	0.27	0	0.53	0.8747	0.1114	0.8961	1.9951	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1067	700	445	501	1036	3124	828	684	525	726	456	1870	423	1407	439	1144	248	888	1440	414	1045	864	2275	1707	1170	1232	291	376	535	909	2080	656	2138	205	574	2555	867	639	1113	1582	703	909	469	1550	147	759	946	170	252	414	940	1659	230	291	136	550	62	848	1105	543	534	57	111	774
GCF_037081715.1	NZ_JAZDDH010000004	NZ_JAZDDH010000004.1	Halalkalicoccus sp. CG83 CG83_ctg04; whole genome shotgun sequence.	30036	30259	33429	33675	127399	0.24	0.24	0.26	0.26	0.53	0.9497	0.0074	0.9927	1.9979	54	47	101	21705	18467	24120	24453	88745	0.25	0.21	0.27	0.27	0.55	0.9037	0.2005	0.8265	1.9747	58	51	47	98	21312	18174	23627	23935	87048	0.25	0.21	0.27	0.27	0	0.55	0.9041	0.2002	0.8267	1.9749	58	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	530	464	242	334	620	1419	479	531	270	363	361	1094	258	625	235	581	205	410	718	299	491	513	1126	925	644	580	220	267	337	548	1006	474	892	189	427	1195	405	319	510	746	314	376	382	669	102	426	445	92	129	264	443	648	164	213	75	385	22	396	410	301	419	35	41	413
GCF_037081715.1	NZ_JAZDDH010000005	NZ_JAZDDH010000005.1	Halalkalicoccus sp. CG83 CG83_ctg07; whole genome shotgun sequence.	165	107	235	215	722	0.23	0.15	0.33	0.3	0.62	0.8819	0.2577	0.7817	1.9424	1	0	1	165	107	235	215	722	0.23	0.15	0.33	0.3	0.62	0.8819	0.2577	0.7817	1.9424	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GCF_037081715.1	NZ_JAZDDH010000006	NZ_JAZDDH010000006.1	Halalkalicoccus sp. CG83 CG83_ctg10; whole genome shotgun sequence.	85	127	195	174	581	0.15	0.22	0.34	0.3	0.64	0.8805	0.255	0.7808	1.9348	0	1	1	127	85	174	195	581	0.22	0.15	0.3	0.34	0.64	0.8736	0.255	0.7808	1.9348	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0