Assembly Assembly | Locus_ID Locus_ID | Version Version | Definition Sequence description | bp_chromo_A Total number of 'A' nucleotides in the whole sequence | bp_chromo_T Total number of 'T' nucleotides in the whole sequence | bp_chromo_C Total number of 'C' nucleotides in the whole sequence | bp_chromo_G Total number of 'G' nucleotides in the whole sequence | bp_chromo_N Total number of 'N' nucleotides in the whole sequence | bp_chromo_tot Total number of nucleotides in the whole sequence | fr_chromo_A Frequency of 'A' nucleotides in the whole sequence | fr_chromo_T Frequency of 'T' nucleotides in the whole sequence | fr_chromo_C Frequency of 'C' nucleotides in the whole sequence | fr_chromo_G Frequency of 'G' nucleotides in the whole sequence | fr_chromo_N Frequency of 'N' nucleotides in the whole sequence | GC_chromo Percentage of āGā + āCā nucleotides in the whole sequence | topo_entropy_chromo Topological entropy of the whole sequence | chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence | chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee | shannon_chromo Shannon entropy of the whole sequence | n_gene_pos Number of genes in the positive strand | n_gene_neg Number of genes in the negative strand | n_gene_tot Total number of genes in the chromosome | bp_gene_A Number of 'A' bases in total genes | bp_gene_T Number of 'T' bases in total genes | bp_gene_C Number of 'C' bases in total genes | bp_gene_G Number of 'G' bases in total genes | bp_gene_N Number of 'N' bases in total genes | bp_gene_tot Total number of bases in total genes | fr_gene_A Frequency of 'A' bases among total gene bases | fr_gene_T Frequency of 'T' bases among total gene bases | fr_gene_C Frequency of 'C' bases among total gene bases | fr_gene_G Frequency of 'G' bases among total gene bases | fr_gene_N Frequency of 'N' bases among total gene bases | GC_gene Percentage of 'G' and 'C' bases in total genes | topo_entropy_gene Topological entropy calculated from total gene sequences | chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes | chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes | shannon_gene Shannon entropy score for total genes | bp_gene_overlap_tot Number of bases overlapping between genes on two strands | n_cds_pos Number of CDS in the positive strand | n_cds_neg Number of CDS in the negative strand | n_cds_tot Total number of CDS in the chromosome | bp_cds_A Number of 'A' bases in total CDS (coding sequences) | bp_cds_T Number of 'T' bases in total CDS | bp_cds_C Number of 'C' bases in total CDS | bp_cds_G Number of 'G' bases in total CDS | bp_cds_N Number of 'N' bases in total CDS | bp_cds_tot Total bases in total CDS | fr_cds_A Frequency of 'A' bases among total CDS bases | fr_cds_T Frequency of 'T' bases among total CDS bases | fr_cds_C Frequency of 'C' bases among total CDS bases | fr_cds_G Frequency of 'G' bases among total CDS bases | fr_cds_N Frequency of 'N' bases among total CDS bases | GC_cds Percentage of 'G' and 'C' bases in total CDS | topo_entropy_cds Topological entropy calculated from total CDS sequences | chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS | chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS | shannon_cds Shannon entropy score for total CDS | bp_cds_overlap_tot Number of bases overlapping between CDS on two strands | bp_cds_intron_A Number of 'A' bases in total introns between CDS | bp_cds_intron_T Number of 'T' bases in total introns between CDS | bp_cds_intron_C Number of 'C' bases in total introns between CDS | bp_cds_intron_G Number of 'G' bases in total introns between CDS | bp_cds_intron_N Number of 'N' bases in total introns between CDS | bp_cds_intron_tot Total bases in total introns between CDS | fr_cds_intron_A Frequency of 'A' bases in total introns between CDS | fr_cds_intron_T Frequency of 'T' bases in total introns between CDS | fr_cds_intron_C Frequency of 'C' bases in total introns between CDS | fr_cds_intron_G Frequency of 'G' bases in total introns between CDS | fr_cds_intron_N Frequency of 'N' bases in total introns between CDS | GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS | topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS | chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS | chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS | shannon_cds_intron Shannon entropy score for total introns between CDS | bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands | n_ncRNA_pos Number of ncRNA in the positive strand | n_ncRNA_neg Number of ncRNA in the negative strand | n_ncRNA_tot Total number of ncRNA in the chromosome | bp_ncRNA_A Number of 'A' bases in total ncRNA | bp_ncRNA_T bp_ncRNA_T | bp_ncRNA_C Number of 'C' bases in total ncRNA | bp_ncRNA_G Number of 'G' bases in total ncRNA | bp_ncRNA_N Number of 'N' bases in total ncRNA | bp_ncRNA_tot Total bases in total ncRNA | fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases | fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases | fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases | fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases | fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases | GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA | topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences | chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA | chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA | shannon_ncRNA Shannon entropy score for total ncRNA | bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands | bp_nc_intron_A Number of 'A' bases in total introns between ncRNA | bp_nc_intron_T Number of 'T' bases in total introns between ncRNA | bp_nc_intron_C Number of 'C' bases in total introns between ncRNA | bp_nc_intron_G Number of 'G' bases in total introns between ncRNA | bp_nc_intron_N Number of 'N' bases in total introns between ncRNA | bp_nc_intron_tot Total bases in total introns between ncRNA | fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA | fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA | fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA | fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA | fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA | GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA | topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA | chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA | chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA | shannon_nc_intron Shannon entropy score for total introns between ncRNA | bp_nc_intron_overlap_tot Number of bases overlapping between introns between ncRNA on two strands | n_tRNA_pos Number of tRNA in the positive strand | n_tRNA_neg Number of tRNA in the negative strand | n_tRNA_tot Total number of tRNA in the chromosome | bp_tRNA_A Number of 'A' bases in total tRNA | bp_tRNA_T Number of 'T' bases in total tRNA | bp_tRNA_C Number of 'C' bases in total tRNA | bp_tRNA_G Number of 'G' bases in total tRNA | bp_tRNA_N Number of 'N' bases in total tRNA | bp_tRNA_tot Total bases in total tRNA | fr_tRNA_A Frequency of 'A' bases among total tRNA bases | fr_tRNA_T Frequency of 'T' bases among total tRNA bases | fr_tRNA_C Frequency of 'C' bases among total tRNA bases | fr_tRNA_G Frequency of 'G' bases among total tRNA bases | fr_tRNA_N Frequency of 'N' bases among total tRNA bases | GC_tRNA Percentage of 'G' and 'C' bases in total tRNA | topo_entropy_tRNA Topological entropy calculated from total tRNA sequences | chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA | chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA | shannon_tRNA Shannon entropy score for total tRNA | bp_tRNA_overlap_tot Number of bases overlapping between tRNA on two strands | n_rRNA_pos Number of rRNA in the positive strand | n_rRNA_neg Number of rRNA in the negative strand | n_rRNA_tot Total number of rRNA in the chromosome | bp_rRNA_A Number of 'A' bases in total rRNA | bp_rRNA_T Number of 'T' bases in total rRNA | bp_rRNA_C Number of 'C' bases in total rRNA | bp_rRNA_G Number of 'G' bases in total rRNA | bp_rRNA_N Number of 'N' bases in total rRNA | bp_rRNA_tot Total bases in total rRNA | fr_rRNA_A Frequency of 'A' bases among total rRNA bases | fr_rRNA_T Frequency of 'T' bases among total rRNA bases | fr_rRNA_C Frequency of 'C' bases among total rRNA bases | fr_rRNA_G Frequency of 'G' bases among total rRNA bases | fr_rRNA_N Frequency of 'N' bases among total rRNA bases | GC_rRNA Percentage of 'G' and 'C' bases in total rRNA | topo_entropy_rRNA Topological entropy calculated from total rRNA sequences | chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA | chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA | shannon_rRNA Shannon entropy score for total rRNA | bp_rRNA_overlap_tot Number of bases overlapping between rRNA on two strands | ATG ATG | AAG AAG | GTA GTA | ACT ACT | GCA GCA | GAG GAG | GCT GCT | ATT ATT | TCC TCC | TGG TGG | AAT AAT | GAA GAA | TCA TCA | ACG ACG | AGT AGT | AAC AAC | TCT TCT | GTG GTG | TTC TTC | TTT TTT | CTG CTG | GGT GGT | CTC CTC | GAT GAT | CAG CAG | ACC ACC | CTA CTA | TTG TTG | TAT TAT | GGA GGA | ATC ATC | CTT CTT | GTC GTC | ATA ATA | ACA ACA | GAC GAC | CAC CAC | CCC CCC | TAC TAC | GCC GCC | AGC AGC | CGC CGC | AAA AAA | GGC GGC | TGC TGC | GTT GTT | GGG GGG | AGA AGA | TGT TGT | CAT CAT | TCG TCG | GCG GCG | TTA TTA | CCT CCT | AGG AGG | CCA CCA | TAG TAG | CGG CGG | CCG CCG | CGT CGT | CAA CAA | TAA TAA | TGA TGA | CGA CGA |
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GCF_036584055.1 | NZ_CP144461 | NZ_CP144461.1 | Halalkalicoccus sp. FCH27 chromosome; complete genome. | 597039 | 597491 | 1120635 | 1121182 | 0 | 3436347 | 0.17 | 0.17 | 0.33 | 0.33 | 0 | 0.65 | 0.9217 | 0.0006 | 0.9994 | 1.9319 | 1806 | 1738 | 3544 | 513498 | 444844 | 931437 | 964262 | 0 | 2854041 | 0.18 | 0.16 | 0.32 | 0.34 | 0 | 0.66 | 0.871 | 0.1935 | 0.8346 | 1.9086 | 2883 | 1752 | 1688 | 3440 | 504958 | 437643 | 918052 | 949999 | 0 | 2810652 | 0.18 | 0.16 | 0.32 | 0.34 | 0 | 0.66 | 0.8707 | 0.1939 | 0.8343 | 1.9079 | 2705 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 2 | 0 | 2 | 136 | 70 | 249 | 268 | 0 | 723 | 0.19 | 0.1 | 0.34 | 0.37 | 0 | 0.71 | 0.8676 | 0.343 | 0.7355 | 1.8396 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 26 | 24 | 50 | 674 | 759 | 1126 | 1234 | 0 | 3793 | 0.18 | 0.2 | 0.3 | 0.33 | 0 | 0.62 | 0.8786 | 0.1606 | 0.8589 | 1.9443 | 0 | 3 | 0 | 3 | 1088 | 790 | 1183 | 1453 | 0 | 4514 | 0.24 | 0.16 | 0.28 | 0.32 | 0 | 0.6 | 0.8979 | 0.2877 | 0.7604 | 1.9478 | 0 | 16642 | 12741 | 3086 | 2217 | 5933 | 73574 | 4244 | 2353 | 9239 | 10817 | 1898 | 15836 | 1936 | 27390 | 2246 | 19235 | 1231 | 20008 | 28237 | 2819 | 25366 | 8111 | 48567 | 14171 | 17764 | 25422 | 1981 | 3654 | 3475 | 11238 | 37750 | 4133 | 52811 | 1683 | 1834 | 56651 | 17334 | 18522 | 22072 | 39204 | 14781 | 24683 | 3281 | 41929 | 3048 | 5685 | 20135 | 1798 | 3924 | 2308 | 21118 | 47481 | 845 | 1562 | 2656 | 2253 | 946 | 22110 | 21976 | 5791 | 2358 | 534 | 1960 | 10297 |
GCF_036584055.1 | NZ_CP144462 | NZ_CP144462.1 | Halalkalicoccus sp. FCH27 plasmid unnamed1; complete sequence. | 91644 | 92180 | 118009 | 117826 | 0 | 419659 | 0.22 | 0.22 | 0.28 | 0.28 | 0 | 0.56 | 0.9497 | 0.0037 | 0.9963 | 1.9889 | 172 | 209 | 381 | 62466 | 56629 | 81055 | 84102 | 0 | 284252 | 0.23 | 0.2 | 0.28 | 0.29 | 0 | 0.57 | 0.8978 | 0.1708 | 0.8501 | 1.9698 | 368 | 165 | 199 | 364 | 60382 | 54745 | 78284 | 81350 | 0 | 274761 | 0.23 | 0.2 | 0.28 | 0.29 | 0 | 0.57 | 0.8979 | 0.1731 | 0.8483 | 1.9696 | 243 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 1 | 0 | 1 | 16 | 19 | 19 | 20 | 0 | 74 | 0.22 | 0.26 | 0.26 | 0.27 | 0 | 0.53 | 0.8747 | 0.1114 | 0.8961 | 1.9951 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 1724 | 1031 | 749 | 806 | 1814 | 4675 | 1413 | 1143 | 855 | 1201 | 766 | 2951 | 736 | 2486 | 741 | 1732 | 395 | 1618 | 2478 | 740 | 1670 | 1575 | 3881 | 2846 | 1835 | 1985 | 491 | 641 | 957 | 1507 | 3480 | 1201 | 3702 | 370 | 1007 | 4095 | 1328 | 1058 | 1662 | 2665 | 1153 | 1306 | 739 | 2577 | 270 | 1420 | 1654 | 276 | 435 | 654 | 1524 | 2906 | 339 | 533 | 234 | 937 | 93 | 1395 | 1793 | 870 | 860 | 99 | 177 | 1332 |
GCF_036584055.1 | NZ_CP144463 | NZ_CP144463.1 | Halalkalicoccus sp. FCH27 plasmid unnamed2; complete sequence. | 58897 | 60515 | 71391 | 70698 | 0 | 261501 | 0.23 | 0.23 | 0.27 | 0.27 | 0 | 0.54 | 0.949 | 0.0184 | 0.9818 | 1.9945 | 116 | 117 | 233 | 39838 | 33544 | 46565 | 48312 | 0 | 168259 | 0.24 | 0.2 | 0.27 | 0.28 | 0 | 0.56 | 0.8999 | 0.1828 | 0.8403 | 1.9737 | 98 | 114 | 113 | 227 | 39530 | 33290 | 46243 | 47953 | 0 | 167016 | 0.24 | 0.2 | 0.27 | 0.28 | 0 | 0.56 | 0.8998 | 0.1833 | 0.8399 | 1.9736 | 98 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 1 | 1 | 30 | 25 | 39 | 51 | 0 | 145 | 0.21 | 0.17 | 0.27 | 0.35 | 0 | 0.62 | 0.887 | 0.2242 | 0.799 | 1.9473 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 1118 | 831 | 449 | 619 | 1127 | 2909 | 865 | 834 | 559 | 589 | 627 | 1907 | 491 | 1433 | 477 | 1256 | 310 | 870 | 1363 | 476 | 933 | 931 | 2075 | 1698 | 1272 | 1203 | 343 | 416 | 567 | 949 | 2121 | 805 | 2037 | 251 | 677 | 2363 | 793 | 587 | 1038 | 1491 | 639 | 797 | 622 | 1413 | 156 | 843 | 949 | 207 | 269 | 375 | 887 | 1675 | 259 | 312 | 141 | 605 | 59 | 787 | 982 | 479 | 645 | 67 | 104 | 739 |
GCF_036584055.1 | NZ_CP144464 | NZ_CP144464.1 | Halalkalicoccus sp. FCH27 plasmid unnamed3; complete sequence. | 36888 | 36744 | 42999 | 42527 | 0 | 159158 | 0.23 | 0.23 | 0.27 | 0.27 | 0 | 0.54 | 0.948 | 0.0075 | 0.9926 | 1.996 | 80 | 65 | 145 | 26875 | 23567 | 30537 | 31110 | 0 | 112089 | 0.24 | 0.21 | 0.27 | 0.28 | 0 | 0.54 | 0.8999 | 0.1889 | 0.8363 | 1.9737 | 99 | 76 | 62 | 138 | 26399 | 23107 | 29942 | 30466 | 0 | 109914 | 0.24 | 0.21 | 0.27 | 0.28 | 0 | 0.54 | 0.9005 | 0.187 | 0.8378 | 1.9739 | 99 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 680 | 553 | 272 | 414 | 792 | 1807 | 626 | 632 | 367 | 437 | 400 | 1310 | 385 | 826 | 367 | 707 | 291 | 501 | 876 | 390 | 558 | 594 | 1394 | 1273 | 858 | 673 | 258 | 276 | 497 | 610 | 1277 | 618 | 1169 | 212 | 448 | 1503 | 540 | 429 | 609 | 907 | 415 | 504 | 481 | 865 | 129 | 548 | 554 | 142 | 200 | 281 | 632 | 889 | 230 | 257 | 100 | 416 | 36 | 529 | 592 | 371 | 491 | 39 | 63 | 538 |