Assembly Assembly | Locus_ID Locus_ID | Version Version | Definition Sequence description | bp_chromo_A Total number of 'A' nucleotides in the whole sequence | bp_chromo_T Total number of 'T' nucleotides in the whole sequence | bp_chromo_C Total number of 'C' nucleotides in the whole sequence | bp_chromo_G Total number of 'G' nucleotides in the whole sequence | bp_chromo_N Total number of 'N' nucleotides in the whole sequence | bp_chromo_tot Total number of nucleotides in the whole sequence | fr_chromo_A Frequency of 'A' nucleotides in the whole sequence | fr_chromo_T Frequency of 'T' nucleotides in the whole sequence | fr_chromo_C Frequency of 'C' nucleotides in the whole sequence | fr_chromo_G Frequency of 'G' nucleotides in the whole sequence | fr_chromo_N Frequency of 'N' nucleotides in the whole sequence | GC_chromo Percentage of āGā + āCā nucleotides in the whole sequence | topo_entropy_chromo Topological entropy of the whole sequence | chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence | chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee | shannon_chromo Shannon entropy of the whole sequence | n_gene_pos Number of genes in the positive strand | n_gene_neg Number of genes in the negative strand | n_gene_tot Total number of genes in the chromosome | bp_gene_A Number of 'A' bases in total genes | bp_gene_T Number of 'T' bases in total genes | bp_gene_C Number of 'C' bases in total genes | bp_gene_G Number of 'G' bases in total genes | bp_gene_N Number of 'N' bases in total genes | bp_gene_tot Total number of bases in total genes | fr_gene_A Frequency of 'A' bases among total gene bases | fr_gene_T Frequency of 'T' bases among total gene bases | fr_gene_C Frequency of 'C' bases among total gene bases | fr_gene_G Frequency of 'G' bases among total gene bases | fr_gene_N Frequency of 'N' bases among total gene bases | GC_gene Percentage of 'G' and 'C' bases in total genes | topo_entropy_gene Topological entropy calculated from total gene sequences | chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes | chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes | shannon_gene Shannon entropy score for total genes | bp_gene_overlap_tot Number of bases overlapping between genes on two strands | n_cds_pos Number of CDS in the positive strand | n_cds_neg Number of CDS in the negative strand | n_cds_tot Total number of CDS in the chromosome | bp_cds_A Number of 'A' bases in total CDS (coding sequences) | bp_cds_T Number of 'T' bases in total CDS | bp_cds_C Number of 'C' bases in total CDS | bp_cds_G Number of 'G' bases in total CDS | bp_cds_N Number of 'N' bases in total CDS | bp_cds_tot Total bases in total CDS | fr_cds_A Frequency of 'A' bases among total CDS bases | fr_cds_T Frequency of 'T' bases among total CDS bases | fr_cds_C Frequency of 'C' bases among total CDS bases | fr_cds_G Frequency of 'G' bases among total CDS bases | fr_cds_N Frequency of 'N' bases among total CDS bases | GC_cds Percentage of 'G' and 'C' bases in total CDS | topo_entropy_cds Topological entropy calculated from total CDS sequences | chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS | chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS | shannon_cds Shannon entropy score for total CDS | bp_cds_overlap_tot Number of bases overlapping between CDS on two strands | bp_cds_intron_A Number of 'A' bases in total introns between CDS | bp_cds_intron_T Number of 'T' bases in total introns between CDS | bp_cds_intron_C Number of 'C' bases in total introns between CDS | bp_cds_intron_G Number of 'G' bases in total introns between CDS | bp_cds_intron_N Number of 'N' bases in total introns between CDS | bp_cds_intron_tot Total bases in total introns between CDS | fr_cds_intron_A Frequency of 'A' bases in total introns between CDS | fr_cds_intron_T Frequency of 'T' bases in total introns between CDS | fr_cds_intron_C Frequency of 'C' bases in total introns between CDS | fr_cds_intron_G Frequency of 'G' bases in total introns between CDS | fr_cds_intron_N Frequency of 'N' bases in total introns between CDS | GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS | topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS | chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS | chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS | shannon_cds_intron Shannon entropy score for total introns between CDS | bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands | n_ncRNA_pos Number of ncRNA in the positive strand | n_ncRNA_neg Number of ncRNA in the negative strand | n_ncRNA_tot Total number of ncRNA in the chromosome | bp_ncRNA_A Number of 'A' bases in total ncRNA | bp_ncRNA_T bp_ncRNA_T | bp_ncRNA_C Number of 'C' bases in total ncRNA | bp_ncRNA_G Number of 'G' bases in total ncRNA | bp_ncRNA_N Number of 'N' bases in total ncRNA | bp_ncRNA_tot Total bases in total ncRNA | fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases | fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases | fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases | fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases | fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases | GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA | topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences | chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA | chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA | shannon_ncRNA Shannon entropy score for total ncRNA | bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands | bp_nc_intron_A Number of 'A' bases in total introns between ncRNA | bp_nc_intron_T Number of 'T' bases in total introns between ncRNA | bp_nc_intron_C Number of 'C' bases in total introns between ncRNA | bp_nc_intron_G Number of 'G' bases in total introns between ncRNA | bp_nc_intron_N Number of 'N' bases in total introns between ncRNA | bp_nc_intron_tot Total bases in total introns between ncRNA | fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA | fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA | fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA | fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA | fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA | GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA | topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA | chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA | chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA | shannon_nc_intron Shannon entropy score for total introns between ncRNA | bp_nc_intron_overlap_tot Number of bases overlapping between introns between ncRNA on two strands | n_tRNA_pos Number of tRNA in the positive strand | n_tRNA_neg Number of tRNA in the negative strand | n_tRNA_tot Total number of tRNA in the chromosome | bp_tRNA_A Number of 'A' bases in total tRNA | bp_tRNA_T Number of 'T' bases in total tRNA | bp_tRNA_C Number of 'C' bases in total tRNA | bp_tRNA_G Number of 'G' bases in total tRNA | bp_tRNA_N Number of 'N' bases in total tRNA | bp_tRNA_tot Total bases in total tRNA | fr_tRNA_A Frequency of 'A' bases among total tRNA bases | fr_tRNA_T Frequency of 'T' bases among total tRNA bases | fr_tRNA_C Frequency of 'C' bases among total tRNA bases | fr_tRNA_G Frequency of 'G' bases among total tRNA bases | fr_tRNA_N Frequency of 'N' bases among total tRNA bases | GC_tRNA Percentage of 'G' and 'C' bases in total tRNA | topo_entropy_tRNA Topological entropy calculated from total tRNA sequences | chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA | chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA | shannon_tRNA Shannon entropy score for total tRNA | bp_tRNA_overlap_tot Number of bases overlapping between tRNA on two strands | n_rRNA_pos Number of rRNA in the positive strand | n_rRNA_neg Number of rRNA in the negative strand | n_rRNA_tot Total number of rRNA in the chromosome | bp_rRNA_A Number of 'A' bases in total rRNA | bp_rRNA_T Number of 'T' bases in total rRNA | bp_rRNA_C Number of 'C' bases in total rRNA | bp_rRNA_G Number of 'G' bases in total rRNA | bp_rRNA_N Number of 'N' bases in total rRNA | bp_rRNA_tot Total bases in total rRNA | fr_rRNA_A Frequency of 'A' bases among total rRNA bases | fr_rRNA_T Frequency of 'T' bases among total rRNA bases | fr_rRNA_C Frequency of 'C' bases among total rRNA bases | fr_rRNA_G Frequency of 'G' bases among total rRNA bases | fr_rRNA_N Frequency of 'N' bases among total rRNA bases | GC_rRNA Percentage of 'G' and 'C' bases in total rRNA | topo_entropy_rRNA Topological entropy calculated from total rRNA sequences | chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA | chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA | shannon_rRNA Shannon entropy score for total rRNA | bp_rRNA_overlap_tot Number of bases overlapping between rRNA on two strands | ATG ATG | AAG AAG | GTA GTA | ACT ACT | GCA GCA | GAG GAG | GCT GCT | ATT ATT | TCC TCC | TGG TGG | AAT AAT | GAA GAA | TCA TCA | ACG ACG | AGT AGT | AAC AAC | TCT TCT | GTG GTG | TTC TTC | TTT TTT | CTG CTG | GGT GGT | CTC CTC | GAT GAT | CAG CAG | ACC ACC | CTA CTA | TTG TTG | TAT TAT | GGA GGA | ATC ATC | CTT CTT | GTC GTC | ATA ATA | ACA ACA | GAC GAC | CAC CAC | CCC CCC | TAC TAC | GCC GCC | AGC AGC | CGC CGC | AAA AAA | GGC GGC | TGC TGC | GTT GTT | GGG GGG | AGA AGA | TGT TGT | CAT CAT | TCG TCG | GCG GCG | TTA TTA | CCT CCT | AGG AGG | CCA CCA | TAG TAG | CGG CGG | CCG CCG | CGT CGT | CAA CAA | TAA TAA | TGA TGA | CGA CGA |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
GCF_000755225.1 | NZ_BBMO01000003 | NZ_BBMO01000003.1 | Halapricum salinum strain CBA1105; whole genome shotgun sequence. | 50019 | 49279 | 92761 | 92088 | 0 | 284147 | 0.18 | 0.17 | 0.33 | 0.32 | 0 | 0.65 | 0.9253 | 0.0111 | 0.989 | 1.9336 | 157 | 154 | 311 | 46416 | 40461 | 83780 | 83806 | 0 | 254463 | 0.18 | 0.16 | 0.32 | 0.33 | 0 | 0.66 | 0.8758 | 0.1979 | 0.8311 | 1.9156 | 147 | 153 | 151 | 304 | 45956 | 40045 | 82982 | 82987 | 0 | 251970 | 0.18 | 0.16 | 0.33 | 0.33 | 0 | 0.66 | 0.8757 | 0.1985 | 0.8308 | 1.9152 | 143 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 1 | 1 | 45 | 47 | 100 | 120 | 0 | 312 | 0.14 | 0.15 | 0.32 | 0.38 | 0 | 0.71 | 0.8833 | 0.1126 | 0.8954 | 1.8706 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 2 | 0 | 2 | 28 | 34 | 44 | 50 | 0 | 156 | 0.18 | 0.22 | 0.28 | 0.32 | 0 | 0.6 | 0.9015 | 0.1606 | 0.853 | 1.9645 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 1491 | 981 | 207 | 427 | 886 | 5026 | 610 | 265 | 798 | 966 | 237 | 2180 | 221 | 2232 | 440 | 1483 | 215 | 1639 | 2492 | 310 | 3025 | 978 | 3829 | 1217 | 2106 | 2129 | 121 | 385 | 349 | 737 | 2985 | 210 | 5398 | 82 | 397 | 5734 | 1543 | 1578 | 1798 | 4205 | 1157 | 2217 | 547 | 3866 | 298 | 357 | 1716 | 122 | 385 | 148 | 1830 | 3565 | 58 | 153 | 106 | 317 | 65 | 1666 | 1730 | 481 | 255 | 37 | 202 | 800 |
GCF_000755225.1 | NZ_BBMO01000002 | NZ_BBMO01000002.1 | Halapricum salinum strain CBA1105; whole genome shotgun sequence. | 211935 | 212576 | 367637 | 365296 | 0 | 1157444 | 0.18 | 0.18 | 0.32 | 0.32 | 0 | 0.63 | 0.9346 | 0.0047 | 0.9953 | 1.9482 | 507 | 587 | 1094 | 198673 | 168463 | 326245 | 328496 | 0 | 1021877 | 0.2 | 0.17 | 0.32 | 0.32 | 0 | 0.64 | 0.8808 | 0.1876 | 0.8386 | 1.927 | 812 | 497 | 565 | 1062 | 195820 | 166058 | 322223 | 324106 | 0 | 1008207 | 0.2 | 0.17 | 0.32 | 0.32 | 0 | 0.64 | 0.8808 | 0.1886 | 0.8378 | 1.9266 | 812 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 1 | 0 | 1 | 86 | 41 | 132 | 145 | 0 | 404 | 0.21 | 0.1 | 0.33 | 0.36 | 0 | 0.69 | 0.8764 | 0.4013 | 0.6935 | 1.868 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 5 | 14 | 19 | 259 | 273 | 441 | 471 | 0 | 1444 | 0.18 | 0.19 | 0.31 | 0.33 | 0 | 0.63 | 0.8726 | 0.1147 | 0.8969 | 1.9396 | 0 | 0 | 3 | 3 | 1093 | 837 | 1156 | 1429 | 0 | 4515 | 0.23 | 0.18 | 0.28 | 0.32 | 0 | 0.6 | 0.9071 | 0.2008 | 0.8197 | 1.9624 | 0 | 5303 | 3763 | 1069 | 2036 | 3963 | 19135 | 2855 | 1537 | 3098 | 3951 | 1434 | 9518 | 1131 | 9859 | 2044 | 6555 | 928 | 6426 | 9621 | 1398 | 11245 | 4372 | 14380 | 5845 | 8414 | 8750 | 851 | 2017 | 1883 | 3374 | 12073 | 1329 | 20298 | 648 | 2097 | 22162 | 5773 | 5440 | 7518 | 14492 | 4675 | 7810 | 2395 | 13372 | 947 | 1905 | 6846 | 784 | 1357 | 874 | 7288 | 13145 | 459 | 824 | 632 | 1775 | 269 | 6457 | 7529 | 2220 | 1548 | 164 | 629 | 3580 |
GCF_000755225.1 | NZ_BBMO01000001 | NZ_BBMO01000001.1 | Halapricum salinum strain CBA1105; whole genome shotgun sequence. | 363911 | 364087 | 641809 | 640094 | 0 | 2009901 | 0.18 | 0.18 | 0.32 | 0.32 | 0 | 0.64 | 0.9317 | 0.0016 | 0.9984 | 1.9445 | 1018 | 1032 | 2050 | 347475 | 292324 | 580924 | 581899 | 0 | 1802622 | 0.19 | 0.16 | 0.32 | 0.32 | 0 | 0.64 | 0.8807 | 0.1915 | 0.8354 | 1.9276 | 1041 | 996 | 1009 | 2005 | 343343 | 288467 | 574624 | 575401 | 0 | 1781835 | 0.19 | 0.16 | 0.32 | 0.32 | 0 | 0.64 | 0.8806 | 0.192 | 0.8351 | 1.9273 | 1006 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 10 | 14 | 24 | 324 | 359 | 534 | 588 | 0 | 1805 | 0.18 | 0.2 | 0.3 | 0.32 | 0 | 0.62 | 0.876 | 0.177 | 0.8468 | 1.9414 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 10269 | 7084 | 1667 | 3239 | 7015 | 34618 | 4571 | 2252 | 5780 | 7105 | 2156 | 16924 | 1732 | 16831 | 3473 | 12007 | 1434 | 10742 | 17589 | 2100 | 19733 | 7356 | 25743 | 9361 | 14912 | 14943 | 1273 | 3266 | 2811 | 5939 | 22733 | 2016 | 37441 | 807 | 3205 | 40404 | 10497 | 9965 | 13527 | 26258 | 8452 | 14348 | 3997 | 24474 | 1650 | 3043 | 11948 | 1155 | 2423 | 1274 | 12756 | 23529 | 584 | 1276 | 1059 | 2920 | 571 | 11118 | 13128 | 3662 | 2198 | 322 | 1112 | 6168 |