Assembly Assembly | Locus_ID Locus_ID | Version Version | Definition Sequence description | bp_chromo_A Total number of 'A' nucleotides in the whole sequence | bp_chromo_T Total number of 'T' nucleotides in the whole sequence | bp_chromo_C Total number of 'C' nucleotides in the whole sequence | bp_chromo_G Total number of 'G' nucleotides in the whole sequence | bp_chromo_N Total number of 'N' nucleotides in the whole sequence | bp_chromo_tot Total number of nucleotides in the whole sequence | fr_chromo_A Frequency of 'A' nucleotides in the whole sequence | fr_chromo_T Frequency of 'T' nucleotides in the whole sequence | fr_chromo_C Frequency of 'C' nucleotides in the whole sequence | fr_chromo_G Frequency of 'G' nucleotides in the whole sequence | fr_chromo_N Frequency of 'N' nucleotides in the whole sequence | GC_chromo Percentage of āGā + āCā nucleotides in the whole sequence | topo_entropy_chromo Topological entropy of the whole sequence | chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence | chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee | shannon_chromo Shannon entropy of the whole sequence | n_gene_pos Number of genes in the positive strand | n_gene_neg Number of genes in the negative strand | n_gene_tot Total number of genes in the chromosome | bp_gene_A Number of 'A' bases in total genes | bp_gene_T Number of 'T' bases in total genes | bp_gene_C Number of 'C' bases in total genes | bp_gene_G Number of 'G' bases in total genes | bp_gene_N Number of 'N' bases in total genes | bp_gene_tot Total number of bases in total genes | fr_gene_A Frequency of 'A' bases among total gene bases | fr_gene_T Frequency of 'T' bases among total gene bases | fr_gene_C Frequency of 'C' bases among total gene bases | fr_gene_G Frequency of 'G' bases among total gene bases | fr_gene_N Frequency of 'N' bases among total gene bases | GC_gene Percentage of 'G' and 'C' bases in total genes | topo_entropy_gene Topological entropy calculated from total gene sequences | chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes | chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes | shannon_gene Shannon entropy score for total genes | bp_gene_overlap_tot Number of bases overlapping between genes on two strands | n_cds_pos Number of CDS in the positive strand | n_cds_neg Number of CDS in the negative strand | n_cds_tot Total number of CDS in the chromosome | bp_cds_A Number of 'A' bases in total CDS (coding sequences) | bp_cds_T Number of 'T' bases in total CDS | bp_cds_C Number of 'C' bases in total CDS | bp_cds_G Number of 'G' bases in total CDS | bp_cds_N Number of 'N' bases in total CDS | bp_cds_tot Total bases in total CDS | fr_cds_A Frequency of 'A' bases among total CDS bases | fr_cds_T Frequency of 'T' bases among total CDS bases | fr_cds_C Frequency of 'C' bases among total CDS bases | fr_cds_G Frequency of 'G' bases among total CDS bases | fr_cds_N Frequency of 'N' bases among total CDS bases | GC_cds Percentage of 'G' and 'C' bases in total CDS | topo_entropy_cds Topological entropy calculated from total CDS sequences | chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS | chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS | shannon_cds Shannon entropy score for total CDS | bp_cds_overlap_tot Number of bases overlapping between CDS on two strands | bp_cds_intron_A Number of 'A' bases in total introns between CDS | bp_cds_intron_T Number of 'T' bases in total introns between CDS | bp_cds_intron_C Number of 'C' bases in total introns between CDS | bp_cds_intron_G Number of 'G' bases in total introns between CDS | bp_cds_intron_N Number of 'N' bases in total introns between CDS | bp_cds_intron_tot Total bases in total introns between CDS | fr_cds_intron_A Frequency of 'A' bases in total introns between CDS | fr_cds_intron_T Frequency of 'T' bases in total introns between CDS | fr_cds_intron_C Frequency of 'C' bases in total introns between CDS | fr_cds_intron_G Frequency of 'G' bases in total introns between CDS | fr_cds_intron_N Frequency of 'N' bases in total introns between CDS | GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS | topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS | chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS | chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS | shannon_cds_intron Shannon entropy score for total introns between CDS | bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands | n_ncRNA_pos Number of ncRNA in the positive strand | n_ncRNA_neg Number of ncRNA in the negative strand | n_ncRNA_tot Total number of ncRNA in the chromosome | bp_ncRNA_A Number of 'A' bases in total ncRNA | bp_ncRNA_T bp_ncRNA_T | bp_ncRNA_C Number of 'C' bases in total ncRNA | bp_ncRNA_G Number of 'G' bases in total ncRNA | bp_ncRNA_N Number of 'N' bases in total ncRNA | bp_ncRNA_tot Total bases in total ncRNA | fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases | fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases | fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases | fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases | fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases | GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA | topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences | chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA | chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA | shannon_ncRNA Shannon entropy score for total ncRNA | bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands | bp_nc_intron_A Number of 'A' bases in total introns between ncRNA | bp_nc_intron_T Number of 'T' bases in total introns between ncRNA | bp_nc_intron_C Number of 'C' bases in total introns between ncRNA | bp_nc_intron_G Number of 'G' bases in total introns between ncRNA | bp_nc_intron_N Number of 'N' bases in total introns between ncRNA | bp_nc_intron_tot Total bases in total introns between ncRNA | fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA | fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA | fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA | fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA | fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA | GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA | topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA | chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA | chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA | shannon_nc_intron Shannon entropy score for total introns between ncRNA | bp_nc_intron_overlap_tot Number of bases overlapping between introns between ncRNA on two strands | n_tRNA_pos Number of tRNA in the positive strand | n_tRNA_neg Number of tRNA in the negative strand | n_tRNA_tot Total number of tRNA in the chromosome | bp_tRNA_A Number of 'A' bases in total tRNA | bp_tRNA_T Number of 'T' bases in total tRNA | bp_tRNA_C Number of 'C' bases in total tRNA | bp_tRNA_G Number of 'G' bases in total tRNA | bp_tRNA_N Number of 'N' bases in total tRNA | bp_tRNA_tot Total bases in total tRNA | fr_tRNA_A Frequency of 'A' bases among total tRNA bases | fr_tRNA_T Frequency of 'T' bases among total tRNA bases | fr_tRNA_C Frequency of 'C' bases among total tRNA bases | fr_tRNA_G Frequency of 'G' bases among total tRNA bases | fr_tRNA_N Frequency of 'N' bases among total tRNA bases | GC_tRNA Percentage of 'G' and 'C' bases in total tRNA | topo_entropy_tRNA Topological entropy calculated from total tRNA sequences | chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA | chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA | shannon_tRNA Shannon entropy score for total tRNA | bp_tRNA_overlap_tot Number of bases overlapping between tRNA on two strands | n_rRNA_pos Number of rRNA in the positive strand | n_rRNA_neg Number of rRNA in the negative strand | n_rRNA_tot Total number of rRNA in the chromosome | bp_rRNA_A Number of 'A' bases in total rRNA | bp_rRNA_T Number of 'T' bases in total rRNA | bp_rRNA_C Number of 'C' bases in total rRNA | bp_rRNA_G Number of 'G' bases in total rRNA | bp_rRNA_N Number of 'N' bases in total rRNA | bp_rRNA_tot Total bases in total rRNA | fr_rRNA_A Frequency of 'A' bases among total rRNA bases | fr_rRNA_T Frequency of 'T' bases among total rRNA bases | fr_rRNA_C Frequency of 'C' bases among total rRNA bases | fr_rRNA_G Frequency of 'G' bases among total rRNA bases | fr_rRNA_N Frequency of 'N' bases among total rRNA bases | GC_rRNA Percentage of 'G' and 'C' bases in total rRNA | topo_entropy_rRNA Topological entropy calculated from total rRNA sequences | chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA | chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA | shannon_rRNA Shannon entropy score for total rRNA | bp_rRNA_overlap_tot Number of bases overlapping between rRNA on two strands | ATG ATG | AAG AAG | GTA GTA | ACT ACT | GCA GCA | GAG GAG | GCT GCT | ATT ATT | TCC TCC | TGG TGG | AAT AAT | GAA GAA | TCA TCA | ACG ACG | AGT AGT | AAC AAC | TCT TCT | GTG GTG | TTC TTC | TTT TTT | CTG CTG | GGT GGT | CTC CTC | GAT GAT | CAG CAG | ACC ACC | CTA CTA | TTG TTG | TAT TAT | GGA GGA | ATC ATC | CTT CTT | GTC GTC | ATA ATA | ACA ACA | GAC GAC | CAC CAC | CCC CCC | TAC TAC | GCC GCC | AGC AGC | CGC CGC | AAA AAA | GGC GGC | TGC TGC | GTT GTT | GGG GGG | AGA AGA | TGT TGT | CAT CAT | TCG TCG | GCG GCG | TTA TTA | CCT CCT | AGG AGG | CCA CCA | TAG TAG | CGG CGG | CCG CCG | CGT CGT | CAA CAA | TAA TAA | TGA TGA | CGA CGA |
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GCF_000223905.1 | NC_015948 | NC_015948.1 | Haloarcula hispanica ATCC 33960 chromosome I; complete sequence. | 543585 | 543939 | 954961 | 952786 | 0 | 2995271 | 0.18 | 0.18 | 0.32 | 0.32 | 0 | 0.64 | 0.9333 | 0.0015 | 0.9985 | 1.9452 | 1515 | 1591 | 3106 | 510977 | 428846 | 858074 | 861324 | 0 | 2659221 | 0.19 | 0.16 | 0.32 | 0.32 | 0 | 0.64 | 0.8838 | 0.19 | 0.8367 | 1.9268 | 2069 | 1476 | 1552 | 3028 | 505090 | 423645 | 849392 | 851916 | 0 | 2630043 | 0.19 | 0.16 | 0.32 | 0.32 | 0 | 0.64 | 0.8838 | 0.1908 | 0.8361 | 1.9265 | 1949 | 2 | 0 | 0 | 0 | 0 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | NA | 1 | 0 | 0 | 0 | 1 | 1 | 2 | 140 | 98 | 266 | 284 | 0 | 788 | 0.18 | 0.13 | 0.33 | 0.36 | 0 | 0.7 | 0.8785 | 0.1971 | 0.8355 | 1.8761 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 26 | 22 | 48 | 648 | 711 | 1086 | 1191 | 0 | 3636 | 0.18 | 0.19 | 0.3 | 0.33 | 0 | 0.63 | 0.8752 | 0.1647 | 0.8563 | 1.9392 | 0 | 3 | 3 | 6 | 2259 | 1662 | 2312 | 2819 | 0 | 9052 | 0.23 | 0.17 | 0.28 | 0.32 | 0 | 0.6 | 0.9089 | 0.2199 | 0.8055 | 1.9569 | 0 | 15950 | 11096 | 3284 | 5014 | 10465 | 47100 | 8325 | 5642 | 10477 | 9628 | 2420 | 24818 | 3235 | 25791 | 3880 | 18684 | 2166 | 18955 | 24864 | 3391 | 29708 | 10401 | 36401 | 10531 | 22459 | 22051 | 2523 | 3317 | 3306 | 7008 | 28815 | 4621 | 49706 | 2539 | 6352 | 64356 | 14880 | 11487 | 19944 | 40437 | 13026 | 20031 | 5252 | 39275 | 2530 | 6614 | 17318 | 1468 | 3613 | 2186 | 17065 | 35204 | 1053 | 1672 | 1314 | 4017 | 760 | 18631 | 22697 | 4863 | 3160 | 765 | 1503 | 6637 |
GCF_000223905.1 | NC_015943 | NC_015943.1 | Haloarcula hispanica ATCC 33960 chromosome II; complete sequence. | 103590 | 106618 | 139607 | 139103 | 0 | 488918 | 0.21 | 0.22 | 0.29 | 0.28 | 0 | 0.57 | 0.9518 | 0.0162 | 0.984 | 1.9857 | 190 | 235 | 425 | 84932 | 71093 | 107650 | 111641 | 0 | 375316 | 0.23 | 0.19 | 0.28 | 0.3 | 0 | 0.58 | 0.8993 | 0.188 | 0.8364 | 1.9648 | 366 | 183 | 230 | 413 | 81943 | 68594 | 104268 | 107991 | 0 | 362796 | 0.23 | 0.19 | 0.28 | 0.3 | 0 | 0.58 | 0.8993 | 0.1892 | 0.8356 | 1.9647 | 358 | 2 | 0 | 0 | 0 | 0 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | NA | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 3 | 0 | 3 | 1141 | 840 | 1146 | 1399 | 0 | 4526 | 0.23 | 0.17 | 0.28 | 0.32 | 0 | 0.59 | 0.909 | 0.2194 | 0.8059 | 1.9587 | 0 | 2141 | 1616 | 756 | 1230 | 2423 | 5803 | 1828 | 1400 | 1202 | 1456 | 988 | 4229 | 948 | 3059 | 1049 | 2513 | 651 | 2078 | 3119 | 914 | 2960 | 1888 | 4393 | 3077 | 3154 | 2366 | 673 | 931 | 1043 | 1617 | 3796 | 1382 | 5025 | 574 | 1586 | 6711 | 1789 | 1380 | 2553 | 3640 | 1644 | 1787 | 1323 | 3418 | 413 | 1623 | 2243 | 428 | 540 | 618 | 2106 | 3595 | 379 | 490 | 314 | 1289 | 91 | 2268 | 2443 | 1061 | 1153 | 112 | 210 | 1443 |
GCF_000223905.1 | NC_015944 | NC_015944.1 | Haloarcula hispanica ATCC 33960 plasmid pHH400; complete sequence. | 81762 | 81022 | 121144 | 121888 | 0 | 405816 | 0.2 | 0.2 | 0.3 | 0.3 | 0 | 0.6 | 0.9418 | 0.0076 | 0.9924 | 1.9716 | 173 | 181 | 354 | 69372 | 61018 | 103076 | 105561 | 0 | 339027 | 0.21 | 0.18 | 0.3 | 0.31 | 0 | 0.61 | 0.8958 | 0.1727 | 0.849 | 1.9509 | 158 | 173 | 178 | 351 | 69246 | 60910 | 102890 | 105387 | 0 | 338433 | 0.21 | 0.18 | 0.3 | 0.31 | 0 | 0.61 | 0.8959 | 0.1727 | 0.849 | 1.9509 | 158 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 1 | 1 | 25 | 18 | 41 | 39 | 0 | 123 | 0.2 | 0.15 | 0.33 | 0.32 | 0 | 0.65 | 0.8809 | 0.1878 | 0.8356 | 1.9267 | 0 | 2112 | 1178 | 671 | 954 | 1852 | 5013 | 1428 | 1063 | 1176 | 1330 | 534 | 3584 | 664 | 3182 | 803 | 2317 | 427 | 2343 | 3188 | 651 | 3353 | 1668 | 4673 | 2089 | 2757 | 2625 | 442 | 628 | 687 | 1385 | 3686 | 898 | 5717 | 549 | 1286 | 6676 | 1800 | 1297 | 2484 | 4026 | 1537 | 1747 | 909 | 4113 | 317 | 1264 | 2438 | 309 | 537 | 427 | 2195 | 4222 | 243 | 328 | 268 | 768 | 74 | 2164 | 2949 | 793 | 649 | 81 | 196 | 1087 |