GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_000011085.1	NC_006396	NC_006396.1	Haloarcula marismortui ATCC 43049 chromosome I; complete sequence.	589963	588697	976764	976300	3131724	0.19	0.19	0.31	0.31	0.62	0.94	0.0013	0.9987	1.9554	1585	1667	3252	546601	465317	866108	881082	2759108	0.2	0.17	0.31	0.32	0.63	0.8884	0.1852	0.8403	1.9376	2182	1543	1623	3166	539101	458652	855150	869237	2722140	0.2	0.17	0.31	0.32	0.63	0.8885	0.1857	0.84	1.9375	2142	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	1	2	138	104	265	287	794	0.17	0.13	0.33	0.36	0	0.69	0.8785	0.17	0.8526	1.8812	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	26	22	48	650	723	1086	1196	3655	0.18	0.2	0.3	0.33	0	0.63	0.8748	0.1655	0.8553	1.9399	3	3	6	2271	1658	2317	2806	9052	0.23	0.17	0.28	0.31	0	0.59	0.909	0.2231	0.8024	1.9596	16461	11266	3728	6141	13194	46777	10910	7638	9897	10160	3416	27457	4458	25444	4664	19200	2972	19419	24350	4841	29338	11892	35483	13638	23489	21650	3016	3702	4301	7735	28374	7064	47627	2759	8398	63425	15024	10882	19836	38630	13322	19637	6169	38565	2560	9532	17700	1662	3862	2719	16899	34257	1223	2365	1355	5434	776	18542	22409	5915	3779	856	1534	7652
GCF_000011085.1	NC_006397	NC_006397.1	Haloarcula marismortui ATCC 43049 chromosome II; complete sequence.	60571	62631	82737	82111	288050	0.21	0.22	0.29	0.29	0.57	0.9487	0.0205	0.9798	1.9848	135	130	265	48173	41213	62062	65225	216673	0.22	0.19	0.28	0.3	0.58	0.8986	0.194	0.8324	1.9648	184	131	125	256	46597	39982	60327	63202	210108	0.22	0.19	0.28	0.3	0.58	0.8986	0.1949	0.8318	1.965	184	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	0	1	14	13	21	26	74	0.19	0.18	0.28	0.35	0	0.64	0.887	0.1434	0.8681	1.9411	0	3	3	1145	836	1153	1392	4526	0.23	0.17	0.28	0.31	0	0.59	0.9089	0.2184	0.8069	1.9588	1348	834	456	763	1481	3224	1064	867	631	786	513	2371	534	1834	601	1436	356	1301	1832	597	1878	1139	2567	1703	1775	1480	312	478	542	922	2250	815	2988	344	979	3852	982	696	1474	2154	981	1022	723	2194	180	1010	1430	225	304	352	1095	2201	182	277	164	712	57	1210	1394	607	558	61	138	800
GCF_000011085.1	NC_006389	NC_006389.1	Haloarcula marismortui ATCC 43049 plasmid pNG100; complete sequence.	7487	7748	8825	9243	33303	0.22	0.23	0.26	0.28	0.54	0.9446	0.0403	0.9605	1.9945	14	25	39	5695	4549	6206	6728	23178	0.23	0.18	0.28	0.31	0.59	0.8915	0.2407	0.795	1.9519	64	14	25	39	5695	4549	6206	6728	23178	0.23	0.18	0.28	0.31	0.59	0.8915	0.2407	0.795	1.9519	64	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	109	121	56	89	168	398	159	124	67	94	106	316	80	158	92	141	92	118	158	68	167	128	186	259	195	162	37	59	70	100	204	110	241	41	94	405	120	67	132	205	97	133	111	205	45	131	127	46	35	47	104	157	37	48	21	99	6	129	132	65	105	7	26	117
GCF_000011085.1	NC_006390	NC_006390.1	Haloarcula marismortui ATCC 43049 plasmid pNG200; complete sequence.	7373	7471	9318	9290	33452	0.22	0.22	0.28	0.28	0.56	0.9427	0.0081	0.9919	1.9908	13	30	43	6159	4808	7149	7444	25560	0.24	0.18	0.28	0.3	0.58	0.8937	0.2167	0.8138	1.9623	106	13	30	43	6159	4808	7149	7444	25560	0.24	0.18	0.28	0.3	0.58	0.8937	0.2167	0.8138	1.9623	106	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	116	111	44	118	198	396	159	105	78	106	87	300	99	188	104	173	71	150	153	59	189	145	247	316	213	191	41	58	77	113	206	118	312	42	157	466	149	88	132	246	124	151	124	238	40	135	156	31	44	44	119	175	26	37	20	128	9	140	134	83	112	9	25	95
GCF_000011085.1	NC_006391	NC_006391.1	Haloarcula marismortui ATCC 43049 plasmid pNG300; complete sequence.	8326	7475	11755	11965	39521	0.21	0.19	0.3	0.3	0.6	0.9345	0.0627	0.9401	1.97	41	5	46	6384	5446	9164	9732	30726	0.21	0.18	0.29	0.32	0.61	0.8873	0.2087	0.8205	1.9458	111	41	5	46	6384	5446	9164	9732	30726	0.21	0.18	0.29	0.32	0.61	0.8873	0.2087	0.8205	1.9458	111	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	147	117	34	105	196	428	168	111	97	165	53	296	79	294	76	224	70	242	215	57	353	116	318	259	294	210	28	75	75	93	279	72	425	32	109	645	161	105	176	300	129	191	107	408	49	100	202	18	55	51	266	384	19	40	22	112	5	230	228	87	87	10	31	112
GCF_000011085.1	NC_006392	NC_006392.1	Haloarcula marismortui ATCC 43049 plasmid pNG400; complete sequence.	10901	10450	14146	14563	50060	0.22	0.21	0.28	0.29	0.57	0.9423	0.0356	0.965	1.9841	26	24	50	8159	6780	10339	10305	35583	0.23	0.19	0.28	0.29	0.58	0.8999	0.1751	0.8464	1.9674	75	26	24	50	8159	6780	10339	10305	35583	0.23	0.19	0.28	0.29	0.58	0.8999	0.1751	0.8464	1.9674	75	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	166	193	68	132	246	589	194	115	100	158	105	397	114	258	96	212	73	193	268	96	290	159	471	392	310	232	67	82	141	108	310	144	424	42	155	716	221	120	255	360	151	226	154	306	61	167	147	31	77	69	201	297	37	55	30	127	11	261	239	112	120	16	23	171
GCF_000011085.1	NC_006393	NC_006393.1	Haloarcula marismortui ATCC 43049 plasmid pNG500; complete sequence.	30761	29631	36177	36109	132678	0.23	0.22	0.27	0.27	0.54	0.9488	0.0197	0.9807	1.9941	52	50	102	21195	17261	22925	23936	85317	0.25	0.19	0.27	0.29	0.56	0.898	0.1927	0.8336	1.9697	83	51	48	99	20732	16859	22348	23377	83316	0.25	0.19	0.27	0.29	0.56	0.8976	0.195	0.8319	1.9692	83	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	391	406	221	440	595	1295	530	466	288	291	404	1032	372	643	334	625	265	457	644	260	557	430	764	869	707	540	180	272	281	406	720	376	933	194	473	1369	362	240	504	591	374	451	383	704	87	491	447	137	93	163	428	609	124	155	86	405	30	473	409	244	388	24	45	295
GCF_000011085.1	NC_006394	NC_006394.1	Haloarcula marismortui ATCC 43049 plasmid pNG600; complete sequence.	32495	32214	45240	45351	155300	0.21	0.21	0.29	0.29	0.58	0.943	0.0056	0.9945	1.9799	96	70	166	29658	25381	39482	40224	134745	0.22	0.19	0.29	0.3	0.59	0.8951	0.187	0.8378	1.9627	112	95	69	164	29600	25330	39401	40138	134469	0.22	0.19	0.29	0.3	0.59	0.8952	0.1879	0.8371	1.9626	112	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	1	1	15	15	24	21	75	0.2	0.2	0.32	0.28	0	0.6	0.8809	0.0667	0.9375	1.969	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	795	653	270	374	760	2478	607	504	447	605	368	1475	323	1267	386	819	238	733	1253	253	939	622	2063	1283	1101	946	204	295	403	624	1505	422	1999	101	498	2328	777	567	977	1263	543	760	391	1224	151	534	842	128	216	256	736	1337	127	223	86	413	35	833	888	456	418	41	88	572
GCF_000011085.1	NC_006395	NC_006395.1	Haloarcula marismortui ATCC 43049 plasmid pNG700; complete sequence.	84049	83789	121468	121248	410554	0.2	0.2	0.3	0.3	0.59	0.9461	0.0025	0.9975	1.9759	176	178	354	71440	63865	102779	106046	344130	0.21	0.19	0.29	0.31	0.6	0.8995	0.1684	0.852	1.9577	175	175	177	352	71377	63803	102684	105954	343818	0.21	0.19	0.29	0.31	0.6	0.8995	0.1686	0.8519	1.9578	175	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	0	1	24	17	41	41	123	0.2	0.14	0.33	0.33	0	0.67	0.887	0.1707	0.8542	1.9113	2128	1168	615	1088	2129	4926	1686	1243	1156	1331	644	3621	809	3153	881	2323	524	2372	3072	854	3228	1819	4395	2333	2837	2572	513	654	771	1371	3553	1220	5391	572	1423	6500	1831	1216	2500	3932	1577	1708	961	4014	321	1583	2508	336	568	491	2082	4079	215	402	286	942	67	2232	2820	879	703	105	180	1193