GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_003634715.1	NZ_RBWW01000001	NZ_RBWW01000001.1	Haloarcula quadrata strain DSM 11927 Ga0242598_11; whole genome shotgun sequence.	628174	628326	1032345	1027515	3316360	0.19	0.19	0.31	0.31	0.62	0.9378	0.0025	0.9975	1.9572	1685	1760	3445	576913	488367	901239	917116	2883635	0.2	0.17	0.31	0.32	0.63	0.8887	0.1857	0.8398	1.939	2347	1643	1706	3349	567883	480240	888396	903260	2839779	0.2	0.17	0.31	0.32	0.63	0.8887	0.1864	0.8394	1.9389	2278	4	4	1	0	0	0	0	0	NA	1	0	0	2	2	134	100	252	278	764	0.17	0.13	0.33	0.37	0	0.69	0.8785	0.1831	0.8433	1.8818	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	22	27	49	675	742	1124	1236	3777	0.18	0.2	0.3	0.33	0	0.63	0.8756	0.1656	0.8554	1.9399	0	6	6	2278	1659	2311	2804	9052	0.23	0.17	0.28	0.32	0	0.6	0.9085	0.2218	0.8041	1.9572	17043	12314	4102	6470	13590	49291	11631	7946	10205	10740	3741	28979	4712	26321	4969	20072	3185	20054	25364	5124	30057	12346	36893	14789	24453	22385	3177	4159	4506	8126	29414	7624	48660	2975	8950	66003	15985	11256	20947	39743	13901	20673	6511	39489	2901	10077	18027	1783	4084	2866	17333	35004	1335	2568	1520	5856	822	19260	22872	6367	4268	882	1644	8249
GCF_003634715.1	NZ_RBWW01000002	NZ_RBWW01000002.1	Haloarcula quadrata strain DSM 11927 Ga0242598_12; whole genome shotgun sequence.	143645	142245	199997	201907	687794	0.21	0.21	0.29	0.29	0.58	0.9477	0.0096	0.9904	1.9794	316	315	631	117519	103585	162244	167987	551335	0.22	0.19	0.29	0.3	0.59	0.8986	0.1709	0.8504	1.961	551	304	297	601	112891	99893	156567	161874	531225	0.22	0.19	0.29	0.3	0.59	0.8988	0.1706	0.8508	1.9612	372	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	1	1	14	13	21	26	74	0.19	0.18	0.28	0.35	0	0.64	0.887	0.1434	0.8681	1.9411	1	3	4	1165	848	1198	1438	4649	0.23	0.17	0.29	0.32	0	0.61	0.9035	0.212	0.8131	1.9503	3244	2075	1022	1686	3422	7893	2790	1997	1675	2090	1088	5776	1298	4702	1373	3495	845	3501	4713	1387	5025	2727	6727	3926	4450	3723	780	1175	1228	2139	5515	2087	7903	832	2292	9792	2860	1761	3887	5874	2460	2865	1609	5936	576	2454	3577	499	849	771	2972	6032	405	675	435	1637	121	3305	3836	1542	1281	159	321	1983
GCF_003634715.1	NZ_RBWW01000003	NZ_RBWW01000003.1	Haloarcula quadrata strain DSM 11927 Ga0242598_13; whole genome shotgun sequence.	69831	70537	87391	87298	315057	0.22	0.22	0.28	0.28	0.55	0.9477	0.0056	0.9945	1.9914	138	148	286	53312	44569	62488	64028	224397	0.24	0.2	0.27	0.29	0.56	0.9	0.183	0.8407	1.972	314	133	142	275	51100	42926	60072	61605	215703	0.24	0.2	0.28	0.29	0.56	0.9001	0.1814	0.8419	1.972	298	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1044	1105	541	946	1444	3335	1336	964	670	864	816	2627	708	1651	680	1474	564	1313	1712	665	1688	1018	2460	2171	1777	1398	471	645	711	930	1910	971	2558	391	1135	3635	1182	629	1551	1783	928	1327	889	1809	301	1130	1116	277	333	394	1090	1763	284	375	227	894	83	1326	1175	732	879	70	122	904
GCF_003634715.1	NZ_RBWW01000004	NZ_RBWW01000004.1	Haloarcula quadrata strain DSM 11927 Ga0242598_14; whole genome shotgun sequence.	15978	15656	19348	18682	69664	0.23	0.22	0.28	0.27	0.55	0.9489	0.0277	0.9727	1.9938	28	40	68	10835	9555	12538	13038	45966	0.23	0.21	0.27	0.29	0.56	0.8997	0.1994	0.8267	1.9701	132	27	37	64	10329	8985	11965	12392	43671	0.24	0.2	0.27	0.29	0.56	0.8995	0.2008	0.8259	1.969	132	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	217	188	126	205	353	673	264	255	129	190	165	492	169	305	156	286	100	243	322	146	324	259	511	459	363	277	99	117	167	216	403	227	479	69	251	672	199	135	245	390	174	231	170	352	46	267	229	66	81	86	210	334	77	69	44	207	12	236	260	135	183	18	33	191
GCF_003634715.1	NZ_RBWW01000005	NZ_RBWW01000005.1	Haloarcula quadrata strain DSM 11927 Ga0242598_15; whole genome shotgun sequence.	7256	6959	8439	8948	31602	0.23	0.22	0.27	0.28	0.55	0.9427	0.0502	0.9511	1.9922	24	12	36	5483	4470	6321	6547	22821	0.24	0.19	0.28	0.29	0.57	0.8957	0.2019	0.8252	1.9637	51	22	12	34	5037	4097	5722	5931	20787	0.24	0.19	0.28	0.29	0.57	0.8956	0.2077	0.8205	1.9634	51	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	100	93	65	107	167	293	134	115	67	80	95	255	64	173	89	139	62	104	135	49	131	112	186	226	154	161	47	56	84	103	164	102	243	30	108	358	92	67	113	198	110	126	88	198	30	131	94	27	30	28	97	159	29	36	16	87	2	108	104	80	96	8	24	100
GCF_003634715.1	NZ_RBWW01000006	NZ_RBWW01000006.1	Haloarcula quadrata strain DSM 11927 Ga0242598_16; whole genome shotgun sequence.	8859	8158	10772	10883	38672	0.23	0.21	0.28	0.28	0.56	0.9336	0.0463	0.9553	1.989	26	6	32	7103	5725	8217	8449	29494	0.25	0.19	0.28	0.29	0.56	0.9045	0.18	0.8432	1.9757	37	25	6	31	6921	5577	7990	8222	28710	0.25	0.19	0.28	0.29	0.56	0.9046	0.1825	0.8411	1.9756	37	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	125	136	57	125	158	492	176	123	75	105	86	390	82	225	88	173	68	140	211	78	224	114	346	374	259	202	53	83	117	108	245	152	312	47	151	551	162	88	210	240	110	150	122	232	26	144	147	29	31	70	149	244	37	43	28	101	11	200	157	108	127	11	9	133