GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_001485575.1	NZ_BCNB01000001	NZ_BCNB01000001.1	Haloarcula sp. CBA1127; whole genome shotgun sequence.	56791	58797	78512	77831	271931	0.21	0.22	0.29	0.29	0.57	0.9469	0.0217	0.9786	1.9836	91	125	216	49506	41167	63692	66590	220955	0.23	0.19	0.28	0.3	0.58	0.9009	0.1772	0.8446	1.9666	167	86	121	207	47623	39579	61198	64045	212445	0.23	0.19	0.28	0.3	0.58	0.9009	0.1785	0.8435	1.9666	155	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1266	904	440	747	1513	3408	1029	842	654	829	553	2541	527	1841	642	1524	348	1253	1829	491	1797	1140	2646	1861	1816	1408	321	467	567	901	2271	746	3003	311	903	4112	1031	739	1403	2144	979	987	694	2132	178	952	1347	268	302	340	1228	2174	201	315	152	745	37	1306	1514	637	544	59	111	845
GCF_001485575.1	NZ_BCNB01000002	NZ_BCNB01000002.1	Haloarcula sp. CBA1127; whole genome shotgun sequence.	80301	78879	113120	113556	385856	0.21	0.2	0.29	0.29	0.59	0.946	0.0109	0.9892	1.9778	169	171	340	66832	59081	93979	97939	317831	0.21	0.19	0.29	0.31	0.6	0.8985	0.1738	0.8474	1.9576	227	165	169	334	66148	58556	93060	96948	314712	0.21	0.19	0.29	0.31	0.6	0.8988	0.1733	0.8477	1.9578	227	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	1	1	24	16	43	40	123	0.2	0.13	0.35	0.33	0	0.67	0.8682	0.2361	0.7984	1.8999	1943	1082	692	1019	1919	4637	1524	1110	1048	1248	602	3403	747	2802	836	2101	453	2175	2813	774	2976	1710	4007	2205	2552	2312	502	644	735	1405	3316	1033	4904	549	1377	5881	1654	1125	2225	3502	1459	1550	922	3596	304	1395	2226	297	508	433	1922	3662	231	366	272	831	71	1942	2571	803	676	94	169	1062
GCF_001485575.1	NZ_BCNB01000003	NZ_BCNB01000003.1	Haloarcula sp. CBA1127; whole genome shotgun sequence.	24474	24502	29429	29465	107870	0.23	0.23	0.27	0.27	0.55	0.9474	0.0012	0.9988	1.9939	36	68	104	19379	15579	21462	22609	79029	0.24	0.2	0.27	0.29	0.56	0.8967	0.2145	0.8145	1.9664	95	36	66	102	19134	15382	21117	22244	77877	0.24	0.2	0.27	0.29	0.56	0.8967	0.2164	0.813	1.9667	95	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	389	438	165	293	517	1323	422	344	274	338	304	983	266	583	284	548	232	398	603	255	599	357	771	832	722	463	193	228	290	385	748	369	779	158	319	1466	403	259	517	594	312	386	349	607	102	370	422	124	118	185	442	556	109	143	69	322	33	504	418	230	358	21	48	320
GCF_001485575.1	NZ_BCNB01000004	NZ_BCNB01000004.1	Haloarcula sp. CBA1127; whole genome shotgun sequence.	36255	36244	46022	44982	163503	0.22	0.22	0.28	0.28	0.56	0.9466	0.0116	0.9885	1.9907	63	89	152	27744	22907	32494	34132	117277	0.24	0.19	0.28	0.29	0.57	0.8979	0.1957	0.8308	1.9678	141	61	78	139	24660	20564	29212	30330	104766	0.24	0.19	0.28	0.29	0.57	0.898	0.1982	0.8291	1.9675	129	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	6	6	2276	1664	2316	2796	9052	0.23	0.18	0.28	0.31	0	0.59	0.9085	0.2014	0.8206	1.964	551	483	275	451	721	1634	632	457	355	430	364	1209	387	840	381	748	271	549	795	281	792	601	1176	1047	866	684	199	277	339	482	1011	428	1181	170	489	1804	502	345	672	927	468	503	443	904	112	555	584	149	176	218	620	893	116	207	92	426	29	659	604	373	430	40	70	445
GCF_001485575.1	NZ_BCNB01000005	NZ_BCNB01000005.1	Haloarcula sp. CBA1127; whole genome shotgun sequence.	28192	27349	32284	31885	119710	0.24	0.23	0.27	0.27	0.54	0.9482	0.0214	0.9789	1.9962	45	71	116	20057	16605	21238	22908	80808	0.25	0.2	0.26	0.29	0.55	0.8982	0.2	0.8267	1.9707	65	44	69	113	19544	16150	20717	22351	78762	0.25	0.2	0.26	0.29	0.55	0.8979	0.2019	0.8252	1.9702	65	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	460	394	204	387	510	1314	486	435	268	317	332	1036	325	542	285	491	230	360	564	267	515	407	716	888	695	426	184	238	311	382	680	370	835	165	415	1245	384	260	449	547	305	353	396	585	124	462	448	126	180	202	429	588	113	158	89	406	36	490	407	254	374	23	54	333
GCF_001485575.1	NZ_BCNB01000006	NZ_BCNB01000006.1	Haloarcula sp. CBA1127; whole genome shotgun sequence.	584470	585892	974983	976576	3121921	0.19	0.19	0.31	0.31	0.63	0.9387	0.002	0.998	1.9543	1654	1572	3226	547290	465808	872687	885661	2771446	0.2	0.17	0.31	0.32	0.63	0.8882	0.185	0.8404	1.9366	2116	1616	1532	3148	540352	459973	863115	875410	2738850	0.2	0.17	0.31	0.32	0.63	0.8882	0.1856	0.84	1.9365	2088	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	1	2	138	102	263	288	791	0.17	0.13	0.33	0.37	0	0.7	0.8805	0.183	0.8426	1.8789	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	21	25	46	627	685	1050	1147	3509	0.18	0.19	0.3	0.33	0	0.63	0.8753	0.1549	0.8636	1.9402	3	3	6	2273	1658	2319	2802	9052	0.23	0.17	0.28	0.31	0	0.59	0.9086	0.2154	0.8085	1.9603	16550	11330	3882	6196	13013	47186	10647	7196	10245	10169	3351	27164	4354	26048	4645	19303	2839	19448	24958	4548	29644	12065	35772	13846	23461	21979	3079	3855	4264	8087	28942	6800	48719	2763	8114	63625	15175	11113	19961	39274	13550	19645	5966	38721	2536	9125	17678	1694	3939	2743	17151	34517	1225	2223	1428	5376	788	18634	22802	5848	3815	851	1509	7576
GCF_001485575.1	NZ_BCNB01000007	NZ_BCNB01000007.1	Haloarcula sp. CBA1127; whole genome shotgun sequence.	6579	6045	9170	9242	31036	0.21	0.19	0.3	0.3	0.59	0.9357	0.0462	0.9555	1.9742	34	10	44	5691	4888	7772	8192	26543	0.22	0.19	0.28	0.31	0.59	0.8893	0.1973	0.8305	1.9563	111	31	10	41	5319	4532	7165	7554	24570	0.22	0.19	0.28	0.31	0.58	0.8897	0.1977	0.8307	1.9576	74	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	141	110	34	89	139	378	128	84	97	124	62	250	73	223	63	150	58	153	180	49	270	124	313	215	213	169	33	53	56	95	236	60	382	36	82	520	110	69	157	239	109	141	100	284	26	83	149	28	30	43	188	248	23	35	22	63	2	150	173	68	75	10	29	94
GCF_001485575.1	NZ_BCNB01000008	NZ_BCNB01000008.1	Haloarcula sp. CBA1127; whole genome shotgun sequence.	8311	6904	12652	12728	40595	0.2	0.17	0.31	0.31	0.63	0.925	0.0955	0.9124	1.952	49	14	63	7479	5767	11085	11485	35816	0.21	0.16	0.31	0.32	0.63	0.8822	0.1732	0.8492	1.9391	235	45	14	59	6603	5087	9786	10249	31725	0.21	0.16	0.31	0.32	0.63	0.8812	0.1763	0.8468	1.9379	146	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	170	177	21	79	142	679	142	33	113	180	41	227	48	267	87	255	47	160	232	36	277	151	330	249	315	201	41	37	43	79	393	57	498	22	86	871	173	140	262	394	157	258	71	446	82	79	173	11	55	37	233	316	9	26	27	81	4	217	231	94	60	11	44	98
GCF_001485575.1	NZ_BCNB01000009	NZ_BCNB01000009.1	Haloarcula sp. CBA1127; whole genome shotgun sequence.	26072	26109	32814	31847	116842	0.22	0.22	0.28	0.27	0.55	0.9451	0.0157	0.9846	1.9917	41	75	116	21124	16880	23933	25054	86991	0.24	0.19	0.28	0.29	0.57	0.8969	0.2124	0.8163	1.9664	160	39	74	113	20493	16384	23460	24479	84816	0.24	0.19	0.28	0.29	0.57	0.8966	0.2132	0.8158	1.9659	156	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	424	466	161	349	554	1438	470	414	271	399	286	1034	289	692	281	556	244	403	651	209	621	370	823	818	785	488	180	233	296	379	754	405	955	132	400	1622	434	285	584	717	388	439	358	700	144	436	451	122	140	201	503	655	104	123	79	422	23	542	447	257	376	26	64	400