Assembly Assembly | Locus_ID Locus_ID | Version Version | Definition Sequence description | bp_chromo_A Total number of 'A' nucleotides in the whole sequence | bp_chromo_T Total number of 'T' nucleotides in the whole sequence | bp_chromo_C Total number of 'C' nucleotides in the whole sequence | bp_chromo_G Total number of 'G' nucleotides in the whole sequence | bp_chromo_N Total number of 'N' nucleotides in the whole sequence | bp_chromo_tot Total number of nucleotides in the whole sequence | fr_chromo_A Frequency of 'A' nucleotides in the whole sequence | fr_chromo_T Frequency of 'T' nucleotides in the whole sequence | fr_chromo_C Frequency of 'C' nucleotides in the whole sequence | fr_chromo_G Frequency of 'G' nucleotides in the whole sequence | fr_chromo_N Frequency of 'N' nucleotides in the whole sequence | GC_chromo Percentage of āGā + āCā nucleotides in the whole sequence | topo_entropy_chromo Topological entropy of the whole sequence | chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence | chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee | shannon_chromo Shannon entropy of the whole sequence | n_gene_pos Number of genes in the positive strand | n_gene_neg Number of genes in the negative strand | n_gene_tot Total number of genes in the chromosome | bp_gene_A Number of 'A' bases in total genes | bp_gene_T Number of 'T' bases in total genes | bp_gene_C Number of 'C' bases in total genes | bp_gene_G Number of 'G' bases in total genes | bp_gene_N Number of 'N' bases in total genes | bp_gene_tot Total number of bases in total genes | fr_gene_A Frequency of 'A' bases among total gene bases | fr_gene_T Frequency of 'T' bases among total gene bases | fr_gene_C Frequency of 'C' bases among total gene bases | fr_gene_G Frequency of 'G' bases among total gene bases | fr_gene_N Frequency of 'N' bases among total gene bases | GC_gene Percentage of 'G' and 'C' bases in total genes | topo_entropy_gene Topological entropy calculated from total gene sequences | chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes | chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes | shannon_gene Shannon entropy score for total genes | bp_gene_overlap_tot Number of bases overlapping between genes on two strands | n_cds_pos Number of CDS in the positive strand | n_cds_neg Number of CDS in the negative strand | n_cds_tot Total number of CDS in the chromosome | bp_cds_A Number of 'A' bases in total CDS (coding sequences) | bp_cds_T Number of 'T' bases in total CDS | bp_cds_C Number of 'C' bases in total CDS | bp_cds_G Number of 'G' bases in total CDS | bp_cds_N Number of 'N' bases in total CDS | bp_cds_tot Total bases in total CDS | fr_cds_A Frequency of 'A' bases among total CDS bases | fr_cds_T Frequency of 'T' bases among total CDS bases | fr_cds_C Frequency of 'C' bases among total CDS bases | fr_cds_G Frequency of 'G' bases among total CDS bases | fr_cds_N Frequency of 'N' bases among total CDS bases | GC_cds Percentage of 'G' and 'C' bases in total CDS | topo_entropy_cds Topological entropy calculated from total CDS sequences | chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS | chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS | shannon_cds Shannon entropy score for total CDS | bp_cds_overlap_tot Number of bases overlapping between CDS on two strands | bp_cds_intron_A Number of 'A' bases in total introns between CDS | bp_cds_intron_T Number of 'T' bases in total introns between CDS | bp_cds_intron_C Number of 'C' bases in total introns between CDS | bp_cds_intron_G Number of 'G' bases in total introns between CDS | bp_cds_intron_N Number of 'N' bases in total introns between CDS | bp_cds_intron_tot Total bases in total introns between CDS | fr_cds_intron_A Frequency of 'A' bases in total introns between CDS | fr_cds_intron_T Frequency of 'T' bases in total introns between CDS | fr_cds_intron_C Frequency of 'C' bases in total introns between CDS | fr_cds_intron_G Frequency of 'G' bases in total introns between CDS | fr_cds_intron_N Frequency of 'N' bases in total introns between CDS | GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS | topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS | chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS | chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS | shannon_cds_intron Shannon entropy score for total introns between CDS | bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands | n_ncRNA_pos Number of ncRNA in the positive strand | n_ncRNA_neg Number of ncRNA in the negative strand | n_ncRNA_tot Total number of ncRNA in the chromosome | bp_ncRNA_A Number of 'A' bases in total ncRNA | bp_ncRNA_T bp_ncRNA_T | bp_ncRNA_C Number of 'C' bases in total ncRNA | bp_ncRNA_G Number of 'G' bases in total ncRNA | bp_ncRNA_N Number of 'N' bases in total ncRNA | bp_ncRNA_tot Total bases in total ncRNA | fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases | fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases | fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases | fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases | fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases | GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA | topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences | chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA | chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA | shannon_ncRNA Shannon entropy score for total ncRNA | bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands | bp_nc_intron_A Number of 'A' bases in total introns between ncRNA | bp_nc_intron_T Number of 'T' bases in total introns between ncRNA | bp_nc_intron_C Number of 'C' bases in total introns between ncRNA | bp_nc_intron_G Number of 'G' bases in total introns between ncRNA | bp_nc_intron_N Number of 'N' bases in total introns between ncRNA | bp_nc_intron_tot Total bases in total introns between ncRNA | fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA | fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA | fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA | fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA | fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA | GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA | topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA | chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA | chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA | shannon_nc_intron Shannon entropy score for total introns between ncRNA | bp_nc_intron_overlap_tot Number of bases overlapping between introns between ncRNA on two strands | n_tRNA_pos Number of tRNA in the positive strand | n_tRNA_neg Number of tRNA in the negative strand | n_tRNA_tot Total number of tRNA in the chromosome | bp_tRNA_A Number of 'A' bases in total tRNA | bp_tRNA_T Number of 'T' bases in total tRNA | bp_tRNA_C Number of 'C' bases in total tRNA | bp_tRNA_G Number of 'G' bases in total tRNA | bp_tRNA_N Number of 'N' bases in total tRNA | bp_tRNA_tot Total bases in total tRNA | fr_tRNA_A Frequency of 'A' bases among total tRNA bases | fr_tRNA_T Frequency of 'T' bases among total tRNA bases | fr_tRNA_C Frequency of 'C' bases among total tRNA bases | fr_tRNA_G Frequency of 'G' bases among total tRNA bases | fr_tRNA_N Frequency of 'N' bases among total tRNA bases | GC_tRNA Percentage of 'G' and 'C' bases in total tRNA | topo_entropy_tRNA Topological entropy calculated from total tRNA sequences | chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA | chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA | shannon_tRNA Shannon entropy score for total tRNA | bp_tRNA_overlap_tot Number of bases overlapping between tRNA on two strands | n_rRNA_pos Number of rRNA in the positive strand | n_rRNA_neg Number of rRNA in the negative strand | n_rRNA_tot Total number of rRNA in the chromosome | bp_rRNA_A Number of 'A' bases in total rRNA | bp_rRNA_T Number of 'T' bases in total rRNA | bp_rRNA_C Number of 'C' bases in total rRNA | bp_rRNA_G Number of 'G' bases in total rRNA | bp_rRNA_N Number of 'N' bases in total rRNA | bp_rRNA_tot Total bases in total rRNA | fr_rRNA_A Frequency of 'A' bases among total rRNA bases | fr_rRNA_T Frequency of 'T' bases among total rRNA bases | fr_rRNA_C Frequency of 'C' bases among total rRNA bases | fr_rRNA_G Frequency of 'G' bases among total rRNA bases | fr_rRNA_N Frequency of 'N' bases among total rRNA bases | GC_rRNA Percentage of 'G' and 'C' bases in total rRNA | topo_entropy_rRNA Topological entropy calculated from total rRNA sequences | chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA | chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA | shannon_rRNA Shannon entropy score for total rRNA | bp_rRNA_overlap_tot Number of bases overlapping between rRNA on two strands | ATG ATG | AAG AAG | GTA GTA | ACT ACT | GCA GCA | GAG GAG | GCT GCT | ATT ATT | TCC TCC | TGG TGG | AAT AAT | GAA GAA | TCA TCA | ACG ACG | AGT AGT | AAC AAC | TCT TCT | GTG GTG | TTC TTC | TTT TTT | CTG CTG | GGT GGT | CTC CTC | GAT GAT | CAG CAG | ACC ACC | CTA CTA | TTG TTG | TAT TAT | GGA GGA | ATC ATC | CTT CTT | GTC GTC | ATA ATA | ACA ACA | GAC GAC | CAC CAC | CCC CCC | TAC TAC | GCC GCC | AGC AGC | CGC CGC | AAA AAA | GGC GGC | TGC TGC | GTT GTT | GGG GGG | AGA AGA | TGT TGT | CAT CAT | TCG TCG | GCG GCG | TTA TTA | CCT CCT | AGG AGG | CCA CCA | TAG TAG | CGG CGG | CCG CCG | CGT CGT | CAA CAA | TAA TAA | TGA TGA | CGA CGA |
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GCF_016917835.2 | NZ_CP070332 | NZ_CP070332.2 | Halobacterium sp. BOL4-2 chromosome; complete genome. | 318886 | 318366 | 673941 | 678580 | 0 | 1989773 | 0.16 | 0.16 | 0.34 | 0.34 | 0 | 0.68 | 0.9229 | 0.0042 | 0.9958 | 1.9047 | 1046 | 1083 | 2129 | 306438 | 263709 | 623846 | 619292 | 0 | 1813285 | 0.17 | 0.15 | 0.34 | 0.34 | 0 | 0.68 | 0.8708 | 0.2194 | 0.8123 | 1.8847 | 1406 | 1014 | 1056 | 2070 | 303772 | 261336 | 619874 | 614805 | 0 | 1799787 | 0.17 | 0.15 | 0.34 | 0.34 | 0 | 0.68 | 0.8704 | 0.2212 | 0.8109 | 1.8831 | 1394 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 1 | 1 | 2 | 123 | 65 | 245 | 248 | 0 | 681 | 0.18 | 0.1 | 0.36 | 0.37 | 0 | 0.72 | 0.8565 | 0.3321 | 0.7428 | 1.8262 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 25 | 22 | 47 | 645 | 703 | 1046 | 1150 | 0 | 3544 | 0.18 | 0.2 | 0.3 | 0.32 | 0 | 0.62 | 0.8739 | 0.1643 | 0.8551 | 1.9469 | 0 | 3 | 0 | 3 | 1102 | 837 | 1134 | 1436 | 0 | 4509 | 0.22 | 0.19 | 0.27 | 0.32 | 0 | 0.59 | 0.914 | 0.1793 | 0.8405 | 1.967 | 0 | 10011 | 6409 | 1014 | 1611 | 4956 | 30769 | 2896 | 1283 | 7189 | 6346 | 669 | 9306 | 1257 | 17906 | 1516 | 12004 | 586 | 22984 | 17687 | 1018 | 19318 | 4247 | 24088 | 5321 | 13309 | 19276 | 614 | 3920 | 1427 | 2844 | 19832 | 1960 | 30256 | 444 | 2249 | 48932 | 12082 | 10807 | 13670 | 34756 | 9487 | 19776 | 3373 | 29940 | 2399 | 3881 | 13870 | 455 | 1728 | 1105 | 11049 | 36557 | 355 | 551 | 611 | 2023 | 603 | 12564 | 14461 | 2171 | 2145 | 421 | 1046 | 2589 |
GCF_016917835.2 | NZ_CP070334 | NZ_CP070334.1 | Halobacterium sp. BOL4-2 plasmid pBOL4-2_105.9; complete sequence. | 19867 | 22468 | 31994 | 31618 | 0 | 105947 | 0.19 | 0.21 | 0.3 | 0.3 | 0 | 0.6 | 0.9361 | 0.0673 | 0.9362 | 1.9696 | 21 | 78 | 99 | 20499 | 16761 | 28515 | 29262 | 0 | 95037 | 0.22 | 0.18 | 0.3 | 0.31 | 0 | 0.6 | 0.8921 | 0.1869 | 0.8371 | 1.9551 | 101 | 21 | 78 | 99 | 20499 | 16761 | 28515 | 29262 | 0 | 95037 | 0.22 | 0.18 | 0.3 | 0.31 | 0 | 0.6 | 0.8921 | 0.1869 | 0.8371 | 1.9551 | 101 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 494 | 475 | 156 | 238 | 438 | 2049 | 393 | 279 | 319 | 425 | 188 | 1024 | 175 | 852 | 223 | 635 | 118 | 528 | 922 | 141 | 692 | 386 | 1475 | 821 | 878 | 635 | 111 | 195 | 220 | 360 | 1065 | 277 | 1339 | 61 | 269 | 2068 | 495 | 418 | 698 | 957 | 435 | 645 | 239 | 886 | 123 | 353 | 523 | 78 | 139 | 173 | 560 | 1054 | 59 | 127 | 45 | 233 | 16 | 691 | 683 | 336 | 282 | 34 | 58 | 414 |
GCF_016917835.2 | NZ_CP070336 | NZ_CP070336.1 | Halobacterium sp. BOL4-2 plasmid pBOL4-2_2.1; complete sequence. | 473 | 352 | 590 | 729 | 0 | 2144 | 0.22 | 0.16 | 0.28 | 0.34 | 0 | 0.62 | 0.905 | 0.252 | 0.7768 | 1.9504 | 3 | 0 | 3 | 359 | 254 | 396 | 539 | 0 | 1548 | 0.24 | 0.19 | 0.24 | 0.33 | 0 | 0.57 | 0.8886 | 0.3558 | 0.7021 | 1.9569 | 4 | 3 | 0 | 3 | 359 | 254 | 396 | 539 | 0 | 1548 | 0.24 | 0.19 | 0.24 | 0.33 | 0 | 0.57 | 0.8886 | 0.3558 | 0.7021 | 1.9569 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 10 | 14 | 2 | 2 | 3 | 44 | 9 | 1 | 3 | 11 | 1 | 22 | 4 | 18 | 3 | 8 | 2 | 10 | 7 | 3 | 12 | 8 | 8 | 4 | 14 | 8 | 1 | 5 | 5 | 8 | 8 | 6 | 10 | 6 | 0 | 38 | 10 | 3 | 15 | 4 | 5 | 14 | 4 | 10 | 3 | 8 | 9 | 1 | 1 | 6 | 11 | 25 | 6 | 3 | 3 | 2 | 1 | 11 | 18 | 7 | 4 | 1 | 4 | 8 |
GCF_016917835.2 | NZ_CP070335 | NZ_CP070335.2 | Halobacterium sp. BOL4-2 plasmid pBOL4-2_299.7; complete sequence. | 60993 | 61432 | 88568 | 88670 | 0 | 299663 | 0.2 | 0.21 | 0.3 | 0.3 | 0 | 0.59 | 0.9451 | 0.0042 | 0.9959 | 1.9757 | 131 | 150 | 281 | 50430 | 42620 | 70559 | 71279 | 0 | 234888 | 0.22 | 0.18 | 0.3 | 0.3 | 0 | 0.6 | 0.8899 | 0.2119 | 0.8182 | 1.9481 | 363 | 128 | 148 | 276 | 49745 | 42027 | 69604 | 70278 | 0 | 231654 | 0.22 | 0.18 | 0.3 | 0.3 | 0 | 0.6 | 0.8899 | 0.2124 | 0.8179 | 1.948 | 363 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 1321 | 1118 | 393 | 603 | 1290 | 3819 | 952 | 722 | 841 | 924 | 481 | 2302 | 542 | 2167 | 537 | 1731 | 323 | 1770 | 2180 | 379 | 1946 | 1030 | 3208 | 1792 | 1910 | 1754 | 338 | 602 | 479 | 838 | 2743 | 754 | 3046 | 226 | 786 | 4440 | 1291 | 919 | 1755 | 2556 | 1040 | 1512 | 739 | 2277 | 297 | 1082 | 1508 | 198 | 273 | 360 | 1343 | 2902 | 212 | 272 | 153 | 650 | 60 | 1443 | 1654 | 625 | 749 | 76 | 155 | 829 |
GCF_016917835.2 | NZ_CP070337 | NZ_CP070337.2 | Halobacterium sp. BOL4-2 plasmid pBOL4-2_49.8; complete sequence. | 9691 | 11023 | 14689 | 14444 | 0 | 49847 | 0.19 | 0.22 | 0.29 | 0.29 | 0 | 0.58 | 0.9198 | 0.0727 | 0.9312 | 1.9781 | 10 | 48 | 58 | 8223 | 6327 | 10843 | 11480 | 0 | 36873 | 0.23 | 0.17 | 0.3 | 0.31 | 0 | 0.6 | 0.8842 | 0.2496 | 0.7909 | 1.9398 | 78 | 9 | 47 | 56 | 8044 | 6190 | 10675 | 11271 | 0 | 36180 | 0.22 | 0.17 | 0.3 | 0.31 | 0 | 0.61 | 0.8837 | 0.2493 | 0.7915 | 1.9392 | 78 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 167 | 215 | 45 | 129 | 177 | 697 | 155 | 139 | 139 | 160 | 90 | 301 | 86 | 395 | 130 | 290 | 68 | 232 | 247 | 53 | 196 | 188 | 432 | 301 | 325 | 274 | 34 | 88 | 88 | 127 | 353 | 107 | 398 | 29 | 138 | 788 | 192 | 164 | 269 | 328 | 215 | 289 | 107 | 451 | 52 | 160 | 251 | 17 | 38 | 75 | 229 | 420 | 37 | 50 | 33 | 119 | 13 | 227 | 213 | 92 | 105 | 12 | 31 | 90 |