Assembly Assembly | Locus_ID Locus_ID | Version Version | Definition Sequence description | bp_chromo_A Total number of 'A' nucleotides in the whole sequence | bp_chromo_T Total number of 'T' nucleotides in the whole sequence | bp_chromo_C Total number of 'C' nucleotides in the whole sequence | bp_chromo_G Total number of 'G' nucleotides in the whole sequence | bp_chromo_N Total number of 'N' nucleotides in the whole sequence | bp_chromo_tot Total number of nucleotides in the whole sequence | fr_chromo_A Frequency of 'A' nucleotides in the whole sequence | fr_chromo_T Frequency of 'T' nucleotides in the whole sequence | fr_chromo_C Frequency of 'C' nucleotides in the whole sequence | fr_chromo_G Frequency of 'G' nucleotides in the whole sequence | fr_chromo_N Frequency of 'N' nucleotides in the whole sequence | GC_chromo Percentage of āGā + āCā nucleotides in the whole sequence | topo_entropy_chromo Topological entropy of the whole sequence | chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence | chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee | shannon_chromo Shannon entropy of the whole sequence | n_gene_pos Number of genes in the positive strand | n_gene_neg Number of genes in the negative strand | n_gene_tot Total number of genes in the chromosome | bp_gene_A Number of 'A' bases in total genes | bp_gene_T Number of 'T' bases in total genes | bp_gene_C Number of 'C' bases in total genes | bp_gene_G Number of 'G' bases in total genes | bp_gene_N Number of 'N' bases in total genes | bp_gene_tot Total number of bases in total genes | fr_gene_A Frequency of 'A' bases among total gene bases | fr_gene_T Frequency of 'T' bases among total gene bases | fr_gene_C Frequency of 'C' bases among total gene bases | fr_gene_G Frequency of 'G' bases among total gene bases | fr_gene_N Frequency of 'N' bases among total gene bases | GC_gene Percentage of 'G' and 'C' bases in total genes | topo_entropy_gene Topological entropy calculated from total gene sequences | chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes | chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes | shannon_gene Shannon entropy score for total genes | bp_gene_overlap_tot Number of bases overlapping between genes on two strands | n_cds_pos Number of CDS in the positive strand | n_cds_neg Number of CDS in the negative strand | n_cds_tot Total number of CDS in the chromosome | bp_cds_A Number of 'A' bases in total CDS (coding sequences) | bp_cds_T Number of 'T' bases in total CDS | bp_cds_C Number of 'C' bases in total CDS | bp_cds_G Number of 'G' bases in total CDS | bp_cds_N Number of 'N' bases in total CDS | bp_cds_tot Total bases in total CDS | fr_cds_A Frequency of 'A' bases among total CDS bases | fr_cds_T Frequency of 'T' bases among total CDS bases | fr_cds_C Frequency of 'C' bases among total CDS bases | fr_cds_G Frequency of 'G' bases among total CDS bases | fr_cds_N Frequency of 'N' bases among total CDS bases | GC_cds Percentage of 'G' and 'C' bases in total CDS | topo_entropy_cds Topological entropy calculated from total CDS sequences | chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS | chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS | shannon_cds Shannon entropy score for total CDS | bp_cds_overlap_tot Number of bases overlapping between CDS on two strands | bp_cds_intron_A Number of 'A' bases in total introns between CDS | bp_cds_intron_T Number of 'T' bases in total introns between CDS | bp_cds_intron_C Number of 'C' bases in total introns between CDS | bp_cds_intron_G Number of 'G' bases in total introns between CDS | bp_cds_intron_N Number of 'N' bases in total introns between CDS | bp_cds_intron_tot Total bases in total introns between CDS | fr_cds_intron_A Frequency of 'A' bases in total introns between CDS | fr_cds_intron_T Frequency of 'T' bases in total introns between CDS | fr_cds_intron_C Frequency of 'C' bases in total introns between CDS | fr_cds_intron_G Frequency of 'G' bases in total introns between CDS | fr_cds_intron_N Frequency of 'N' bases in total introns between CDS | GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS | topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS | chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS | chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS | shannon_cds_intron Shannon entropy score for total introns between CDS | bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands | n_ncRNA_pos Number of ncRNA in the positive strand | n_ncRNA_neg Number of ncRNA in the negative strand | n_ncRNA_tot Total number of ncRNA in the chromosome | bp_ncRNA_A Number of 'A' bases in total ncRNA | bp_ncRNA_T bp_ncRNA_T | bp_ncRNA_C Number of 'C' bases in total ncRNA | bp_ncRNA_G Number of 'G' bases in total ncRNA | bp_ncRNA_N Number of 'N' bases in total ncRNA | bp_ncRNA_tot Total bases in total ncRNA | fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases | fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases | fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases | fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases | fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases | GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA | topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences | chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA | chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA | shannon_ncRNA Shannon entropy score for total ncRNA | bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands | bp_nc_intron_A Number of 'A' bases in total introns between ncRNA | bp_nc_intron_T Number of 'T' bases in total introns between ncRNA | bp_nc_intron_C Number of 'C' bases in total introns between ncRNA | bp_nc_intron_G Number of 'G' bases in total introns between ncRNA | bp_nc_intron_N Number of 'N' bases in total introns between ncRNA | bp_nc_intron_tot Total bases in total introns between ncRNA | fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA | fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA | fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA | fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA | fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA | GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA | topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA | chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA | chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA | shannon_nc_intron Shannon entropy score for total introns between ncRNA | bp_nc_intron_overlap_tot Number of bases overlapping between introns between ncRNA on two strands | n_tRNA_pos Number of tRNA in the positive strand | n_tRNA_neg Number of tRNA in the negative strand | n_tRNA_tot Total number of tRNA in the chromosome | bp_tRNA_A Number of 'A' bases in total tRNA | bp_tRNA_T Number of 'T' bases in total tRNA | bp_tRNA_C Number of 'C' bases in total tRNA | bp_tRNA_G Number of 'G' bases in total tRNA | bp_tRNA_N Number of 'N' bases in total tRNA | bp_tRNA_tot Total bases in total tRNA | fr_tRNA_A Frequency of 'A' bases among total tRNA bases | fr_tRNA_T Frequency of 'T' bases among total tRNA bases | fr_tRNA_C Frequency of 'C' bases among total tRNA bases | fr_tRNA_G Frequency of 'G' bases among total tRNA bases | fr_tRNA_N Frequency of 'N' bases among total tRNA bases | GC_tRNA Percentage of 'G' and 'C' bases in total tRNA | topo_entropy_tRNA Topological entropy calculated from total tRNA sequences | chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA | chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA | shannon_tRNA Shannon entropy score for total tRNA | bp_tRNA_overlap_tot Number of bases overlapping between tRNA on two strands | n_rRNA_pos Number of rRNA in the positive strand | n_rRNA_neg Number of rRNA in the negative strand | n_rRNA_tot Total number of rRNA in the chromosome | bp_rRNA_A Number of 'A' bases in total rRNA | bp_rRNA_T Number of 'T' bases in total rRNA | bp_rRNA_C Number of 'C' bases in total rRNA | bp_rRNA_G Number of 'G' bases in total rRNA | bp_rRNA_N Number of 'N' bases in total rRNA | bp_rRNA_tot Total bases in total rRNA | fr_rRNA_A Frequency of 'A' bases among total rRNA bases | fr_rRNA_T Frequency of 'T' bases among total rRNA bases | fr_rRNA_C Frequency of 'C' bases among total rRNA bases | fr_rRNA_G Frequency of 'G' bases among total rRNA bases | fr_rRNA_N Frequency of 'N' bases among total rRNA bases | GC_rRNA Percentage of 'G' and 'C' bases in total rRNA | topo_entropy_rRNA Topological entropy calculated from total rRNA sequences | chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA | chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA | shannon_rRNA Shannon entropy score for total rRNA | bp_rRNA_overlap_tot Number of bases overlapping between rRNA on two strands | ATG ATG | AAG AAG | GTA GTA | ACT ACT | GCA GCA | GAG GAG | GCT GCT | ATT ATT | TCC TCC | TGG TGG | AAT AAT | GAA GAA | TCA TCA | ACG ACG | AGT AGT | AAC AAC | TCT TCT | GTG GTG | TTC TTC | TTT TTT | CTG CTG | GGT GGT | CTC CTC | GAT GAT | CAG CAG | ACC ACC | CTA CTA | TTG TTG | TAT TAT | GGA GGA | ATC ATC | CTT CTT | GTC GTC | ATA ATA | ACA ACA | GAC GAC | CAC CAC | CCC CCC | TAC TAC | GCC GCC | AGC AGC | CGC CGC | AAA AAA | GGC GGC | TGC TGC | GTT GTT | GGG GGG | AGA AGA | TGT TGT | CAT CAT | TCG TCG | GCG GCG | TTA TTA | CCT CCT | AGG AGG | CCA CCA | TAG TAG | CGG CGG | CCG CCG | CGT CGT | CAA CAA | TAA TAA | TGA TGA | CGA CGA |
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GCF_001485535.1 | NZ_BCMZ01000001 | NZ_BCMZ01000001.1 | Halobacterium sp. CBA1132; whole genome shotgun sequence. | 423499 | 426233 | 869037 | 868684 | 0 | 2587453 | 0.16 | 0.16 | 0.34 | 0.34 | 0 | 0.67 | 0.9206 | 0.0034 | 0.9966 | 1.9133 | 1353 | 1437 | 2790 | 405425 | 335847 | 790391 | 772118 | 0 | 2303781 | 0.18 | 0.15 | 0.34 | 0.33 | 0 | 0.67 | 0.8665 | 0.2196 | 0.8134 | 1.8925 | 2012 | 1314 | 1403 | 2717 | 400866 | 332237 | 782650 | 764241 | 0 | 2279994 | 0.18 | 0.15 | 0.34 | 0.33 | 0 | 0.67 | 0.8663 | 0.2205 | 0.8128 | 1.8915 | 1952 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 2 | 0 | 2 | 137 | 89 | 241 | 272 | 0 | 739 | 0.18 | 0.12 | 0.33 | 0.37 | 0 | 0.7 | 0.8735 | 0.2557 | 0.7848 | 1.8726 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 26 | 20 | 46 | 642 | 695 | 1018 | 1119 | 0 | 3474 | 0.18 | 0.2 | 0.3 | 0.32 | 0 | 0.62 | 0.8775 | 0.1593 | 0.8499 | 1.931 | 0 | 3 | 0 | 3 | 1100 | 828 | 1139 | 1450 | 0 | 4517 | 0.23 | 0.18 | 0.28 | 0.32 | 0 | 0.59 | 0.905 | 0.2231 | 0.8012 | 1.9629 | 0 | 12312 | 10167 | 1785 | 2430 | 4971 | 45421 | 3896 | 4609 | 10209 | 8377 | 1490 | 18990 | 1124 | 23536 | 2366 | 16281 | 1159 | 20860 | 24751 | 819 | 19465 | 5224 | 40252 | 3268 | 15833 | 18075 | 1219 | 3393 | 1070 | 4042 | 19314 | 1386 | 49272 | 929 | 2046 | 64370 | 14651 | 13429 | 19388 | 34341 | 12164 | 28613 | 3576 | 41644 | 3493 | 3107 | 12881 | 591 | 1475 | 656 | 13728 | 46407 | 582 | 707 | 531 | 1727 | 925 | 11439 | 17801 | 2235 | 3040 | 545 | 1247 | 4364 |
GCF_001485535.1 | NZ_BCMZ01000002 | NZ_BCMZ01000002.1 | Halobacterium sp. CBA1132; whole genome shotgun sequence. | 56882 | 58033 | 84870 | 82987 | 0 | 282772 | 0.2 | 0.21 | 0.3 | 0.29 | 0 | 0.59 | 0.9431 | 0.0212 | 0.979 | 1.9745 | 129 | 154 | 283 | 50616 | 42698 | 71369 | 70784 | 0 | 235467 | 0.22 | 0.18 | 0.3 | 0.3 | 0 | 0.6 | 0.8935 | 0.2056 | 0.8235 | 1.9545 | 264 | 128 | 152 | 280 | 49761 | 41769 | 69853 | 69362 | 0 | 230745 | 0.22 | 0.18 | 0.3 | 0.3 | 0 | 0.6 | 0.8934 | 0.2057 | 0.8234 | 1.9544 | 200 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 1255 | 1026 | 443 | 627 | 1347 | 4023 | 1037 | 775 | 774 | 1035 | 524 | 2525 | 514 | 2277 | 598 | 1579 | 302 | 1318 | 2179 | 375 | 1612 | 904 | 3645 | 1745 | 1916 | 1668 | 351 | 495 | 457 | 869 | 2471 | 733 | 3615 | 159 | 777 | 4653 | 1319 | 944 | 1782 | 2344 | 989 | 1565 | 692 | 2366 | 337 | 967 | 1371 | 163 | 373 | 379 | 1274 | 2665 | 211 | 277 | 121 | 650 | 69 | 1393 | 1512 | 704 | 744 | 81 | 130 | 890 |
GCF_001485535.1 | NZ_BCMZ01000003 | NZ_BCMZ01000003.1 | Halobacterium sp. CBA1132; whole genome shotgun sequence. | 26437 | 26370 | 34060 | 34106 | 0 | 120973 | 0.22 | 0.22 | 0.28 | 0.28 | 0 | 0.56 | 0.9472 | 0.0019 | 0.9981 | 1.9883 | 50 | 60 | 110 | 18827 | 15302 | 23250 | 23202 | 0 | 80581 | 0.23 | 0.19 | 0.29 | 0.29 | 0 | 0.58 | 0.8966 | 0.206 | 0.8229 | 1.9636 | 172 | 47 | 60 | 107 | 18529 | 15082 | 22850 | 22847 | 0 | 79308 | 0.23 | 0.19 | 0.29 | 0.29 | 0 | 0.58 | 0.8965 | 0.2043 | 0.8244 | 1.9637 | 158 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 401 | 344 | 161 | 274 | 537 | 1291 | 406 | 441 | 294 | 288 | 258 | 976 | 257 | 774 | 244 | 647 | 149 | 455 | 617 | 171 | 455 | 390 | 1008 | 673 | 604 | 607 | 143 | 189 | 218 | 318 | 763 | 354 | 995 | 74 | 384 | 1476 | 390 | 275 | 567 | 743 | 322 | 512 | 320 | 785 | 92 | 520 | 436 | 45 | 85 | 140 | 431 | 738 | 97 | 124 | 45 | 264 | 33 | 426 | 469 | 229 | 335 | 26 | 48 | 303 |
GCF_001485535.1 | NZ_BCMZ01000004 | NZ_BCMZ01000004.1 | Halobacterium sp. CBA1132; whole genome shotgun sequence. | 3806 | 4573 | 6666 | 6564 | 0 | 21609 | 0.18 | 0.21 | 0.31 | 0.3 | 0 | 0.61 | 0.9313 | 0.0992 | 0.9085 | 1.961 | 7 | 17 | 24 | 3531 | 2466 | 4678 | 5005 | 0 | 15680 | 0.23 | 0.15 | 0.31 | 0.31 | 0 | 0.62 | 0.8803 | 0.2983 | 0.7514 | 1.9313 | 58 | 7 | 16 | 23 | 3208 | 2235 | 4165 | 4372 | 0 | 13980 | 0.23 | 0.15 | 0.31 | 0.3 | 0 | 0.62 | 0.8805 | 0.2995 | 0.7509 | 1.9327 | 58 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 91 | 89 | 19 | 30 | 57 | 267 | 68 | 42 | 47 | 62 | 28 | 190 | 16 | 124 | 31 | 127 | 17 | 68 | 112 | 18 | 105 | 50 | 167 | 92 | 134 | 93 | 32 | 19 | 21 | 49 | 110 | 22 | 194 | 23 | 41 | 335 | 75 | 62 | 124 | 110 | 82 | 122 | 44 | 134 | 22 | 45 | 87 | 6 | 10 | 23 | 84 | 186 | 12 | 25 | 16 | 39 | 6 | 96 | 105 | 47 | 36 | 4 | 13 | 55 |