Assembly Assembly | Locus_ID Locus_ID | Version Version | Definition Sequence description | bp_chromo_A Total number of 'A' nucleotides in the whole sequence | bp_chromo_T Total number of 'T' nucleotides in the whole sequence | bp_chromo_C Total number of 'C' nucleotides in the whole sequence | bp_chromo_G Total number of 'G' nucleotides in the whole sequence | bp_chromo_N Total number of 'N' nucleotides in the whole sequence | bp_chromo_tot Total number of nucleotides in the whole sequence | fr_chromo_A Frequency of 'A' nucleotides in the whole sequence | fr_chromo_T Frequency of 'T' nucleotides in the whole sequence | fr_chromo_C Frequency of 'C' nucleotides in the whole sequence | fr_chromo_G Frequency of 'G' nucleotides in the whole sequence | fr_chromo_N Frequency of 'N' nucleotides in the whole sequence | GC_chromo Percentage of āGā + āCā nucleotides in the whole sequence | topo_entropy_chromo Topological entropy of the whole sequence | chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence | chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee | shannon_chromo Shannon entropy of the whole sequence | n_gene_pos Number of genes in the positive strand | n_gene_neg Number of genes in the negative strand | n_gene_tot Total number of genes in the chromosome | bp_gene_A Number of 'A' bases in total genes | bp_gene_T Number of 'T' bases in total genes | bp_gene_C Number of 'C' bases in total genes | bp_gene_G Number of 'G' bases in total genes | bp_gene_N Number of 'N' bases in total genes | bp_gene_tot Total number of bases in total genes | fr_gene_A Frequency of 'A' bases among total gene bases | fr_gene_T Frequency of 'T' bases among total gene bases | fr_gene_C Frequency of 'C' bases among total gene bases | fr_gene_G Frequency of 'G' bases among total gene bases | fr_gene_N Frequency of 'N' bases among total gene bases | GC_gene Percentage of 'G' and 'C' bases in total genes | topo_entropy_gene Topological entropy calculated from total gene sequences | chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes | chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes | shannon_gene Shannon entropy score for total genes | bp_gene_overlap_tot Number of bases overlapping between genes on two strands | n_cds_pos Number of CDS in the positive strand | n_cds_neg Number of CDS in the negative strand | n_cds_tot Total number of CDS in the chromosome | bp_cds_A Number of 'A' bases in total CDS (coding sequences) | bp_cds_T Number of 'T' bases in total CDS | bp_cds_C Number of 'C' bases in total CDS | bp_cds_G Number of 'G' bases in total CDS | bp_cds_N Number of 'N' bases in total CDS | bp_cds_tot Total bases in total CDS | fr_cds_A Frequency of 'A' bases among total CDS bases | fr_cds_T Frequency of 'T' bases among total CDS bases | fr_cds_C Frequency of 'C' bases among total CDS bases | fr_cds_G Frequency of 'G' bases among total CDS bases | fr_cds_N Frequency of 'N' bases among total CDS bases | GC_cds Percentage of 'G' and 'C' bases in total CDS | topo_entropy_cds Topological entropy calculated from total CDS sequences | chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS | chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS | shannon_cds Shannon entropy score for total CDS | bp_cds_overlap_tot Number of bases overlapping between CDS on two strands | bp_cds_intron_A Number of 'A' bases in total introns between CDS | bp_cds_intron_T Number of 'T' bases in total introns between CDS | bp_cds_intron_C Number of 'C' bases in total introns between CDS | bp_cds_intron_G Number of 'G' bases in total introns between CDS | bp_cds_intron_N Number of 'N' bases in total introns between CDS | bp_cds_intron_tot Total bases in total introns between CDS | fr_cds_intron_A Frequency of 'A' bases in total introns between CDS | fr_cds_intron_T Frequency of 'T' bases in total introns between CDS | fr_cds_intron_C Frequency of 'C' bases in total introns between CDS | fr_cds_intron_G Frequency of 'G' bases in total introns between CDS | fr_cds_intron_N Frequency of 'N' bases in total introns between CDS | GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS | topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS | chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS | chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS | shannon_cds_intron Shannon entropy score for total introns between CDS | bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands | n_ncRNA_pos Number of ncRNA in the positive strand | n_ncRNA_neg Number of ncRNA in the negative strand | n_ncRNA_tot Total number of ncRNA in the chromosome | bp_ncRNA_A Number of 'A' bases in total ncRNA | bp_ncRNA_T bp_ncRNA_T | bp_ncRNA_C Number of 'C' bases in total ncRNA | bp_ncRNA_G Number of 'G' bases in total ncRNA | bp_ncRNA_N Number of 'N' bases in total ncRNA | bp_ncRNA_tot Total bases in total ncRNA | fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases | fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases | fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases | fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases | fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases | GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA | topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences | chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA | chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA | shannon_ncRNA Shannon entropy score for total ncRNA | bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands | bp_nc_intron_A Number of 'A' bases in total introns between ncRNA | bp_nc_intron_T Number of 'T' bases in total introns between ncRNA | bp_nc_intron_C Number of 'C' bases in total introns between ncRNA | bp_nc_intron_G Number of 'G' bases in total introns between ncRNA | bp_nc_intron_N Number of 'N' bases in total introns between ncRNA | bp_nc_intron_tot Total bases in total introns between ncRNA | fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA | fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA | fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA | fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA | fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA | GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA | topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA | chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA | chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA | shannon_nc_intron Shannon entropy score for total introns between ncRNA | bp_nc_intron_overlap_tot Number of bases overlapping between introns between ncRNA on two strands | n_tRNA_pos Number of tRNA in the positive strand | n_tRNA_neg Number of tRNA in the negative strand | n_tRNA_tot Total number of tRNA in the chromosome | bp_tRNA_A Number of 'A' bases in total tRNA | bp_tRNA_T Number of 'T' bases in total tRNA | bp_tRNA_C Number of 'C' bases in total tRNA | bp_tRNA_G Number of 'G' bases in total tRNA | bp_tRNA_N Number of 'N' bases in total tRNA | bp_tRNA_tot Total bases in total tRNA | fr_tRNA_A Frequency of 'A' bases among total tRNA bases | fr_tRNA_T Frequency of 'T' bases among total tRNA bases | fr_tRNA_C Frequency of 'C' bases among total tRNA bases | fr_tRNA_G Frequency of 'G' bases among total tRNA bases | fr_tRNA_N Frequency of 'N' bases among total tRNA bases | GC_tRNA Percentage of 'G' and 'C' bases in total tRNA | topo_entropy_tRNA Topological entropy calculated from total tRNA sequences | chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA | chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA | shannon_tRNA Shannon entropy score for total tRNA | bp_tRNA_overlap_tot Number of bases overlapping between tRNA on two strands | n_rRNA_pos Number of rRNA in the positive strand | n_rRNA_neg Number of rRNA in the negative strand | n_rRNA_tot Total number of rRNA in the chromosome | bp_rRNA_A Number of 'A' bases in total rRNA | bp_rRNA_T Number of 'T' bases in total rRNA | bp_rRNA_C Number of 'C' bases in total rRNA | bp_rRNA_G Number of 'G' bases in total rRNA | bp_rRNA_N Number of 'N' bases in total rRNA | bp_rRNA_tot Total bases in total rRNA | fr_rRNA_A Frequency of 'A' bases among total rRNA bases | fr_rRNA_T Frequency of 'T' bases among total rRNA bases | fr_rRNA_C Frequency of 'C' bases among total rRNA bases | fr_rRNA_G Frequency of 'G' bases among total rRNA bases | fr_rRNA_N Frequency of 'N' bases among total rRNA bases | GC_rRNA Percentage of 'G' and 'C' bases in total rRNA | topo_entropy_rRNA Topological entropy calculated from total rRNA sequences | chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA | chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA | shannon_rRNA Shannon entropy score for total rRNA | bp_rRNA_overlap_tot Number of bases overlapping between rRNA on two strands | ATG ATG | AAG AAG | GTA GTA | ACT ACT | GCA GCA | GAG GAG | GCT GCT | ATT ATT | TCC TCC | TGG TGG | AAT AAT | GAA GAA | TCA TCA | ACG ACG | AGT AGT | AAC AAC | TCT TCT | GTG GTG | TTC TTC | TTT TTT | CTG CTG | GGT GGT | CTC CTC | GAT GAT | CAG CAG | ACC ACC | CTA CTA | TTG TTG | TAT TAT | GGA GGA | ATC ATC | CTT CTT | GTC GTC | ATA ATA | ACA ACA | GAC GAC | CAC CAC | CCC CCC | TAC TAC | GCC GCC | AGC AGC | CGC CGC | AAA AAA | GGC GGC | TGC TGC | GTT GTT | GGG GGG | AGA AGA | TGT TGT | CAT CAT | TCG TCG | GCG GCG | TTA TTA | CCT CCT | AGG AGG | CCA CCA | TAG TAG | CGG CGG | CCG CCG | CGT CGT | CAA CAA | TAA TAA | TGA TGA | CGA CGA |
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GCF_013401515.1 | NZ_CP058529 | NZ_CP058529.1 | Halobaculum halophilum strain Gai3-2 chromosome; complete genome. | 596555 | 588480 | 1244158 | 1249422 | 0 | 3678615 | 0.16 | 0.16 | 0.34 | 0.34 | 0 | 0.68 | 0.9181 | 0.0089 | 0.9911 | 1.9067 | 1832 | 1816 | 3648 | 519699 | 456269 | 1061509 | 1082570 | 0 | 3120047 | 0.17 | 0.15 | 0.34 | 0.35 | 0 | 0.68 | 0.866 | 0.1902 | 0.8372 | 1.8858 | 2100 | 1785 | 1762 | 3547 | 511143 | 448472 | 1044968 | 1065458 | 0 | 3070041 | 0.17 | 0.15 | 0.34 | 0.35 | 0 | 0.68 | 0.8658 | 0.1905 | 0.8369 | 1.885 | 1961 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 1 | 1 | 2 | 115 | 71 | 274 | 284 | 0 | 744 | 0.15 | 0.1 | 0.37 | 0.38 | 0 | 0.75 | 0.8408 | 0.2372 | 0.8093 | 1.8003 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 19 | 28 | 47 | 633 | 697 | 1065 | 1175 | 0 | 3570 | 0.18 | 0.19 | 0.3 | 0.33 | 0 | 0.63 | 0.8696 | 0.1622 | 0.8572 | 1.9388 | 0 | 0 | 3 | 3 | 1099 | 807 | 1180 | 1430 | 0 | 4516 | 0.23 | 0.16 | 0.29 | 0.31 | 0 | 0.6 | 0.8951 | 0.2658 | 0.7695 | 1.9513 | 0 | 17321 | 13922 | 2511 | 2174 | 5877 | 70471 | 3770 | 1926 | 13518 | 11745 | 1338 | 16308 | 1609 | 31810 | 2183 | 21508 | 1024 | 27415 | 33557 | 1229 | 28346 | 7620 | 56649 | 7068 | 19424 | 27035 | 1277 | 2594 | 1563 | 7746 | 32313 | 2569 | 63563 | 1083 | 2246 | 78079 | 19284 | 17416 | 25267 | 48592 | 12487 | 28691 | 2401 | 50967 | 4802 | 4095 | 27499 | 1016 | 2180 | 1126 | 22990 | 56211 | 584 | 1303 | 3339 | 2335 | 931 | 26298 | 28086 | 4063 | 1846 | 519 | 2097 | 6531 |
GCF_013401515.1 | NZ_CP058530 | NZ_CP058530.1 | Halobaculum halophilum strain Gai3-2 plasmid unnamed1; complete sequence. | 40830 | 39887 | 91532 | 91496 | 0 | 263745 | 0.15 | 0.15 | 0.35 | 0.35 | 0 | 0.69 | 0.9096 | 0.0119 | 0.9883 | 1.8885 | 121 | 119 | 240 | 34998 | 29936 | 76473 | 78079 | 0 | 219486 | 0.16 | 0.14 | 0.34 | 0.36 | 0 | 0.7 | 0.8606 | 0.191 | 0.8375 | 1.8687 | 181 | 119 | 115 | 234 | 34263 | 29244 | 74646 | 76233 | 0 | 214386 | 0.16 | 0.14 | 0.34 | 0.36 | 0 | 0.7 | 0.8606 | 0.1927 | 0.8362 | 1.8691 | 161 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 1168 | 873 | 100 | 71 | 235 | 5059 | 131 | 33 | 925 | 766 | 34 | 799 | 46 | 2401 | 95 | 1662 | 30 | 2007 | 2301 | 19 | 2275 | 393 | 3946 | 273 | 1552 | 2029 | 29 | 87 | 39 | 435 | 2196 | 80 | 4424 | 45 | 77 | 5573 | 1458 | 1250 | 1895 | 3375 | 1095 | 1947 | 93 | 3701 | 408 | 146 | 2332 | 36 | 138 | 45 | 1713 | 3920 | 10 | 39 | 220 | 88 | 59 | 2153 | 2311 | 201 | 84 | 23 | 152 | 362 |
GCF_013401515.1 | NZ_CP058531 | NZ_CP058531.1 | Halobaculum halophilum strain Gai3-2 plasmid unnamed2; complete sequence. | 40376 | 39297 | 53396 | 53673 | 0 | 186742 | 0.22 | 0.21 | 0.29 | 0.29 | 0 | 0.57 | 0.946 | 0.0161 | 0.9841 | 1.9844 | 100 | 74 | 174 | 28135 | 24139 | 37041 | 37717 | 0 | 127032 | 0.22 | 0.19 | 0.29 | 0.3 | 0 | 0.58 | 0.8961 | 0.1833 | 0.84 | 1.9641 | 121 | 96 | 73 | 169 | 27560 | 23562 | 36259 | 36900 | 0 | 124281 | 0.23 | 0.19 | 0.29 | 0.3 | 0 | 0.58 | 0.8959 | 0.1855 | 0.8382 | 1.9638 | 121 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 793 | 661 | 284 | 398 | 645 | 2091 | 475 | 488 | 474 | 568 | 335 | 1257 | 305 | 1108 | 358 | 954 | 207 | 794 | 1203 | 244 | 818 | 583 | 1796 | 941 | 1033 | 905 | 220 | 319 | 275 | 567 | 1449 | 453 | 1732 | 152 | 422 | 2212 | 704 | 494 | 927 | 1124 | 562 | 676 | 368 | 1089 | 151 | 514 | 835 | 140 | 173 | 235 | 832 | 1311 | 131 | 183 | 140 | 367 | 37 | 784 | 799 | 329 | 384 | 52 | 83 | 483 |
GCF_013401515.1 | NZ_CP058532 | NZ_CP058532.1 | Halobaculum halophilum strain Gai3-2 plasmid unnamed3; complete sequence. | 32612 | 25251 | 44203 | 46791 | 0 | 148857 | 0.22 | 0.17 | 0.3 | 0.31 | 0 | 0.61 | 0.9287 | 0.1557 | 0.8595 | 1.9591 | 230 | 9 | 239 | 27489 | 19869 | 36998 | 40066 | 0 | 124422 | 0.22 | 0.16 | 0.29 | 0.33 | 0 | 0.62 | 0.877 | 0.2443 | 0.7937 | 1.9413 | 401 | 208 | 9 | 217 | 27108 | 19473 | 36433 | 39419 | 0 | 122433 | 0.22 | 0.16 | 0.29 | 0.33 | 0 | 0.62 | 0.8762 | 0.2523 | 0.7878 | 1.9398 | 399 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 21 | 0 | 21 | 295 | 334 | 454 | 522 | 0 | 1605 | 0.18 | 0.21 | 0.28 | 0.32 | 0 | 0.61 | 0.885 | 0.1622 | 0.8548 | 1.9565 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 981 | 1095 | 156 | 210 | 462 | 2720 | 378 | 137 | 390 | 662 | 166 | 1061 | 176 | 1470 | 260 | 1226 | 102 | 824 | 1207 | 54 | 985 | 532 | 1716 | 876 | 1157 | 760 | 42 | 105 | 105 | 495 | 1639 | 119 | 1856 | 42 | 189 | 3026 | 926 | 428 | 1189 | 1124 | 504 | 803 | 219 | 1232 | 206 | 257 | 818 | 91 | 159 | 79 | 925 | 1449 | 25 | 106 | 81 | 222 | 37 | 689 | 857 | 266 | 185 | 53 | 127 | 373 |