Assembly Assembly | Locus_ID Locus_ID | Version Version | Definition Sequence description | bp_chromo_A Total number of 'A' nucleotides in the whole sequence | bp_chromo_T Total number of 'T' nucleotides in the whole sequence | bp_chromo_C Total number of 'C' nucleotides in the whole sequence | bp_chromo_G Total number of 'G' nucleotides in the whole sequence | bp_chromo_N Total number of 'N' nucleotides in the whole sequence | bp_chromo_tot Total number of nucleotides in the whole sequence | fr_chromo_A Frequency of 'A' nucleotides in the whole sequence | fr_chromo_T Frequency of 'T' nucleotides in the whole sequence | fr_chromo_C Frequency of 'C' nucleotides in the whole sequence | fr_chromo_G Frequency of 'G' nucleotides in the whole sequence | fr_chromo_N Frequency of 'N' nucleotides in the whole sequence | GC_chromo Percentage of āGā + āCā nucleotides in the whole sequence | topo_entropy_chromo Topological entropy of the whole sequence | chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence | chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee | shannon_chromo Shannon entropy of the whole sequence | n_gene_pos Number of genes in the positive strand | n_gene_neg Number of genes in the negative strand | n_gene_tot Total number of genes in the chromosome | bp_gene_A Number of 'A' bases in total genes | bp_gene_T Number of 'T' bases in total genes | bp_gene_C Number of 'C' bases in total genes | bp_gene_G Number of 'G' bases in total genes | bp_gene_N Number of 'N' bases in total genes | bp_gene_tot Total number of bases in total genes | fr_gene_A Frequency of 'A' bases among total gene bases | fr_gene_T Frequency of 'T' bases among total gene bases | fr_gene_C Frequency of 'C' bases among total gene bases | fr_gene_G Frequency of 'G' bases among total gene bases | fr_gene_N Frequency of 'N' bases among total gene bases | GC_gene Percentage of 'G' and 'C' bases in total genes | topo_entropy_gene Topological entropy calculated from total gene sequences | chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes | chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes | shannon_gene Shannon entropy score for total genes | bp_gene_overlap_tot Number of bases overlapping between genes on two strands | n_cds_pos Number of CDS in the positive strand | n_cds_neg Number of CDS in the negative strand | n_cds_tot Total number of CDS in the chromosome | bp_cds_A Number of 'A' bases in total CDS (coding sequences) | bp_cds_T Number of 'T' bases in total CDS | bp_cds_C Number of 'C' bases in total CDS | bp_cds_G Number of 'G' bases in total CDS | bp_cds_N Number of 'N' bases in total CDS | bp_cds_tot Total bases in total CDS | fr_cds_A Frequency of 'A' bases among total CDS bases | fr_cds_T Frequency of 'T' bases among total CDS bases | fr_cds_C Frequency of 'C' bases among total CDS bases | fr_cds_G Frequency of 'G' bases among total CDS bases | fr_cds_N Frequency of 'N' bases among total CDS bases | GC_cds Percentage of 'G' and 'C' bases in total CDS | topo_entropy_cds Topological entropy calculated from total CDS sequences | chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS | chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS | shannon_cds Shannon entropy score for total CDS | bp_cds_overlap_tot Number of bases overlapping between CDS on two strands | bp_cds_intron_A Number of 'A' bases in total introns between CDS | bp_cds_intron_T Number of 'T' bases in total introns between CDS | bp_cds_intron_C Number of 'C' bases in total introns between CDS | bp_cds_intron_G Number of 'G' bases in total introns between CDS | bp_cds_intron_N Number of 'N' bases in total introns between CDS | bp_cds_intron_tot Total bases in total introns between CDS | fr_cds_intron_A Frequency of 'A' bases in total introns between CDS | fr_cds_intron_T Frequency of 'T' bases in total introns between CDS | fr_cds_intron_C Frequency of 'C' bases in total introns between CDS | fr_cds_intron_G Frequency of 'G' bases in total introns between CDS | fr_cds_intron_N Frequency of 'N' bases in total introns between CDS | GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS | topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS | chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS | chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS | shannon_cds_intron Shannon entropy score for total introns between CDS | bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands | n_ncRNA_pos Number of ncRNA in the positive strand | n_ncRNA_neg Number of ncRNA in the negative strand | n_ncRNA_tot Total number of ncRNA in the chromosome | bp_ncRNA_A Number of 'A' bases in total ncRNA | bp_ncRNA_T bp_ncRNA_T | bp_ncRNA_C Number of 'C' bases in total ncRNA | bp_ncRNA_G Number of 'G' bases in total ncRNA | bp_ncRNA_N Number of 'N' bases in total ncRNA | bp_ncRNA_tot Total bases in total ncRNA | fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases | fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases | fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases | fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases | fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases | GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA | topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences | chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA | chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA | shannon_ncRNA Shannon entropy score for total ncRNA | bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands | bp_nc_intron_A Number of 'A' bases in total introns between ncRNA | bp_nc_intron_T Number of 'T' bases in total introns between ncRNA | bp_nc_intron_C Number of 'C' bases in total introns between ncRNA | bp_nc_intron_G Number of 'G' bases in total introns between ncRNA | bp_nc_intron_N Number of 'N' bases in total introns between ncRNA | bp_nc_intron_tot Total bases in total introns between ncRNA | fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA | fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA | fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA | fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA | fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA | GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA | topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA | chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA | chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA | shannon_nc_intron Shannon entropy score for total introns between ncRNA | bp_nc_intron_overlap_tot Number of bases overlapping between introns between ncRNA on two strands | n_tRNA_pos Number of tRNA in the positive strand | n_tRNA_neg Number of tRNA in the negative strand | n_tRNA_tot Total number of tRNA in the chromosome | bp_tRNA_A Number of 'A' bases in total tRNA | bp_tRNA_T Number of 'T' bases in total tRNA | bp_tRNA_C Number of 'C' bases in total tRNA | bp_tRNA_G Number of 'G' bases in total tRNA | bp_tRNA_N Number of 'N' bases in total tRNA | bp_tRNA_tot Total bases in total tRNA | fr_tRNA_A Frequency of 'A' bases among total tRNA bases | fr_tRNA_T Frequency of 'T' bases among total tRNA bases | fr_tRNA_C Frequency of 'C' bases among total tRNA bases | fr_tRNA_G Frequency of 'G' bases among total tRNA bases | fr_tRNA_N Frequency of 'N' bases among total tRNA bases | GC_tRNA Percentage of 'G' and 'C' bases in total tRNA | topo_entropy_tRNA Topological entropy calculated from total tRNA sequences | chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA | chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA | shannon_tRNA Shannon entropy score for total tRNA | bp_tRNA_overlap_tot Number of bases overlapping between tRNA on two strands | n_rRNA_pos Number of rRNA in the positive strand | n_rRNA_neg Number of rRNA in the negative strand | n_rRNA_tot Total number of rRNA in the chromosome | bp_rRNA_A Number of 'A' bases in total rRNA | bp_rRNA_T Number of 'T' bases in total rRNA | bp_rRNA_C Number of 'C' bases in total rRNA | bp_rRNA_G Number of 'G' bases in total rRNA | bp_rRNA_N Number of 'N' bases in total rRNA | bp_rRNA_tot Total bases in total rRNA | fr_rRNA_A Frequency of 'A' bases among total rRNA bases | fr_rRNA_T Frequency of 'T' bases among total rRNA bases | fr_rRNA_C Frequency of 'C' bases among total rRNA bases | fr_rRNA_G Frequency of 'G' bases among total rRNA bases | fr_rRNA_N Frequency of 'N' bases among total rRNA bases | GC_rRNA Percentage of 'G' and 'C' bases in total rRNA | topo_entropy_rRNA Topological entropy calculated from total rRNA sequences | chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA | chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA | shannon_rRNA Shannon entropy score for total rRNA | bp_rRNA_overlap_tot Number of bases overlapping between rRNA on two strands | ATG ATG | AAG AAG | GTA GTA | ACT ACT | GCA GCA | GAG GAG | GCT GCT | ATT ATT | TCC TCC | TGG TGG | AAT AAT | GAA GAA | TCA TCA | ACG ACG | AGT AGT | AAC AAC | TCT TCT | GTG GTG | TTC TTC | TTT TTT | CTG CTG | GGT GGT | CTC CTC | GAT GAT | CAG CAG | ACC ACC | CTA CTA | TTG TTG | TAT TAT | GGA GGA | ATC ATC | CTT CTT | GTC GTC | ATA ATA | ACA ACA | GAC GAC | CAC CAC | CCC CCC | TAC TAC | GCC GCC | AGC AGC | CGC CGC | AAA AAA | GGC GGC | TGC TGC | GTT GTT | GGG GGG | AGA AGA | TGT TGT | CAT CAT | TCG TCG | GCG GCG | TTA TTA | CCT CCT | AGG AGG | CCA CCA | TAG TAG | CGG CGG | CCG CCG | CGT CGT | CAA CAA | TAA TAA | TGA TGA | CGA CGA |
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GCF_001190965.1 | NZ_CP011947 | NZ_CP011947.1 | Haloferax gibbonsii strain ARA6 chromosome; complete genome. | 480100 | 490062 | 988878 | 986351 | 0 | 2945391 | 0.16 | 0.17 | 0.34 | 0.33 | 0 | 0.67 | 0.9154 | 0.0115 | 0.9886 | 1.9143 | 1510 | 1577 | 3087 | 445659 | 386310 | 913842 | 844843 | 0 | 2590654 | 0.17 | 0.15 | 0.35 | 0.33 | 0 | 0.67 | 0.8664 | 0.2084 | 0.8221 | 1.8941 | 1648 | 1465 | 1536 | 3001 | 437624 | 379724 | 901295 | 831942 | 0 | 2550585 | 0.17 | 0.15 | 0.35 | 0.33 | 0 | 0.67 | 0.866 | 0.2092 | 0.8215 | 1.8929 | 1615 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 2 | 0 | 2 | 139 | 94 | 240 | 271 | 0 | 744 | 0.18 | 0.13 | 0.32 | 0.36 | 0 | 0.69 | 0.8755 | 0.2398 | 0.7944 | 1.886 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 29 | 27 | 56 | 756 | 852 | 1242 | 1380 | 0 | 4230 | 0.18 | 0.2 | 0.29 | 0.33 | 0 | 0.62 | 0.8759 | 0.1703 | 0.8506 | 1.9448 | 0 | 3 | 3 | 6 | 2302 | 1706 | 2262 | 2750 | 0 | 9020 | 0.24 | 0.19 | 0.28 | 0.3 | 0 | 0.57 | 0.9129 | 0.2079 | 0.8138 | 1.9738 | 0 | 14683 | 12527 | 1276 | 1603 | 3955 | 47767 | 2704 | 4266 | 11457 | 9140 | 1011 | 20439 | 1048 | 24796 | 1952 | 18488 | 1568 | 18019 | 27562 | 1872 | 16653 | 6922 | 53153 | 2982 | 15806 | 24133 | 693 | 2643 | 1376 | 5751 | 25846 | 2813 | 58906 | 1557 | 1466 | 69342 | 15165 | 16013 | 20368 | 44690 | 10741 | 30063 | 3836 | 47508 | 3461 | 3326 | 13578 | 1162 | 1938 | 665 | 21778 | 45862 | 642 | 652 | 939 | 1149 | 570 | 14472 | 21217 | 2310 | 2745 | 642 | 1789 | 6739 |
GCF_001190965.1 | NZ_CP011948 | NZ_CP011948.1 | Haloferax gibbonsii strain ARA6 plasmid pHG1; complete sequence. | 86116 | 86762 | 156969 | 158215 | 0 | 488062 | 0.18 | 0.18 | 0.32 | 0.32 | 0 | 0.65 | 0.9175 | 0.0077 | 0.9923 | 1.9378 | 200 | 198 | 398 | 75344 | 64480 | 139100 | 133933 | 0 | 412857 | 0.18 | 0.16 | 0.33 | 0.32 | 0 | 0.66 | 0.8771 | 0.1884 | 0.8372 | 1.9127 | 265 | 199 | 198 | 397 | 75125 | 64313 | 138739 | 133576 | 0 | 411753 | 0.18 | 0.16 | 0.33 | 0.32 | 0 | 0.66 | 0.8771 | 0.1885 | 0.8371 | 1.9127 | 265 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 2380 | 1724 | 330 | 439 | 880 | 7338 | 602 | 948 | 1591 | 1802 | 292 | 3302 | 263 | 4540 | 513 | 3319 | 317 | 2871 | 4590 | 331 | 2875 | 1383 | 7641 | 800 | 2622 | 3858 | 203 | 567 | 355 | 1362 | 4221 | 585 | 8396 | 395 | 413 | 10375 | 2513 | 2312 | 3501 | 5617 | 2229 | 3658 | 676 | 6804 | 618 | 834 | 2677 | 237 | 374 | 202 | 3597 | 6937 | 160 | 134 | 193 | 342 | 59 | 2574 | 3751 | 414 | 622 | 70 | 268 | 1455 |
GCF_001190965.1 | NZ_CP011949 | NZ_CP011949.1 | Haloferax gibbonsii strain ARA6 plasmid pHG2; complete sequence. | 55449 | 55883 | 111890 | 112659 | 0 | 335881 | 0.17 | 0.17 | 0.33 | 0.34 | 0 | 0.67 | 0.9152 | 0.0073 | 0.9927 | 1.9164 | 137 | 168 | 305 | 49543 | 44362 | 102898 | 96384 | 0 | 293187 | 0.17 | 0.15 | 0.35 | 0.33 | 0 | 0.67 | 0.8691 | 0.1851 | 0.8398 | 1.8994 | 249 | 136 | 165 | 301 | 48910 | 43774 | 101419 | 94854 | 0 | 288957 | 0.17 | 0.15 | 0.35 | 0.33 | 0 | 0.67 | 0.8691 | 0.1863 | 0.8387 | 1.8994 | 229 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 1 | 1 | 18 | 14 | 21 | 22 | 0 | 75 | 0.24 | 0.19 | 0.28 | 0.29 | 0 | 0.57 | 0.8987 | 0.1483 | 0.8662 | 1.9794 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 1578 | 1104 | 132 | 196 | 365 | 4984 | 311 | 513 | 1160 | 1076 | 103 | 2114 | 123 | 3189 | 230 | 2145 | 159 | 2099 | 3276 | 202 | 2001 | 775 | 6063 | 373 | 1766 | 2778 | 82 | 300 | 161 | 780 | 2719 | 320 | 6557 | 222 | 162 | 7484 | 1836 | 1676 | 2577 | 4560 | 1435 | 2903 | 422 | 5115 | 427 | 451 | 1866 | 181 | 203 | 56 | 2824 | 5460 | 56 | 65 | 144 | 118 | 59 | 1936 | 2635 | 240 | 336 | 40 | 202 | 894 |
GCF_001190965.1 | NZ_CP011950 | NZ_CP011950.1 | Haloferax gibbonsii strain ARA6 plasmid pHG3; complete sequence. | 26457 | 27137 | 29919 | 30142 | 0 | 113655 | 0.23 | 0.24 | 0.26 | 0.27 | 0 | 0.53 | 0.9478 | 0.0164 | 0.9838 | 1.9976 | 44 | 37 | 81 | 23776 | 19270 | 24319 | 25554 | 0 | 92919 | 0.26 | 0.2 | 0.26 | 0.28 | 0 | 0.54 | 0.9073 | 0.1884 | 0.8356 | 1.9813 | 50 | 42 | 36 | 78 | 23030 | 18539 | 23385 | 24629 | 0 | 89583 | 0.26 | 0.2 | 0.26 | 0.28 | 0 | 0.54 | 0.9071 | 0.192 | 0.8327 | 1.9811 | 42 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 471 | 553 | 268 | 379 | 589 | 1458 | 475 | 481 | 268 | 421 | 379 | 1378 | 299 | 615 | 337 | 739 | 286 | 425 | 805 | 271 | 482 | 558 | 1008 | 899 | 599 | 497 | 167 | 305 | 311 | 506 | 822 | 459 | 930 | 173 | 376 | 1478 | 471 | 293 | 705 | 545 | 322 | 342 | 511 | 513 | 112 | 505 | 447 | 152 | 123 | 203 | 481 | 616 | 133 | 206 | 92 | 389 | 24 | 390 | 447 | 364 | 460 | 14 | 40 | 494 |
GCF_001190965.1 | NZ_CP011951 | NZ_CP011951.1 | Haloferax gibbonsii strain ARA6 plasmid pHG4; complete sequence. | 8381 | 7935 | 9661 | 9488 | 0 | 35465 | 0.24 | 0.22 | 0.27 | 0.27 | 0 | 0.54 | 0.944 | 0.0364 | 0.9644 | 1.9951 | 21 | 18 | 39 | 5900 | 4910 | 6624 | 6968 | 0 | 24402 | 0.24 | 0.2 | 0.27 | 0.29 | 0 | 0.56 | 0.897 | 0.2022 | 0.8257 | 1.9742 | 16 | 21 | 17 | 38 | 5850 | 4871 | 6583 | 6921 | 0 | 24225 | 0.24 | 0.2 | 0.27 | 0.29 | 0 | 0.56 | 0.8979 | 0.2025 | 0.8257 | 1.9737 | 16 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 132 | 141 | 74 | 117 | 190 | 410 | 136 | 104 | 80 | 116 | 67 | 274 | 81 | 156 | 73 | 168 | 83 | 115 | 172 | 61 | 105 | 143 | 280 | 227 | 156 | 126 | 59 | 62 | 74 | 142 | 221 | 109 | 277 | 38 | 120 | 443 | 149 | 78 | 187 | 166 | 84 | 113 | 96 | 166 | 63 | 138 | 132 | 34 | 63 | 60 | 115 | 156 | 35 | 68 | 42 | 105 | 13 | 150 | 107 | 125 | 112 | 9 | 27 | 149 |