GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	fr_chromo_N Frequency of 'N' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_001368915.1	NZ_CSTE01000001	NZ_CSTE01000001.1	Haloferax massiliensis strain Arc-Hr; whole genome shotgun sequence.	143715	141984	270917	275108	3746	835470	0.17	0.17	0.32	0.33	0	0.65	0.9325	0.0137	0.9864	1.9259	406	415	821	125331	108457	240422	225763	699973	0.18	0.16	0.34	0.32	0.66	0.8689	0.2078	0.8227	1.8989	320	395	400	795	123386	106709	236236	221767	688098	0.18	0.16	0.34	0.32	0.66	0.8688	0.2085	0.8222	1.8987	312	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	1	85	49	140	157	431	0.2	0.11	0.32	0.36	0	0.69	0.8693	0.3259	0.7341	1.8762	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	7	4	11	140	161	244	276	821	0.17	0.2	0.3	0.34	0	0.63	0.8795	0.2015	0.823	1.9368	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	3944	3290	462	657	1370	12507	898	1503	2822	2603	546	5678	566	6864	774	5114	595	4876	7307	725	4651	1899	13175	1421	4391	6301	352	886	627	1754	6832	1053	14894	530	694	17667	3958	4074	5432	11145	2868	7434	1306	12123	917	1230	3706	419	583	372	5860	11910	321	275	314	601	149	4003	5710	771	1107	155	491	1904
GCF_001368915.1	NZ_CSTE01000002	NZ_CSTE01000002.1	Haloferax massiliensis strain Arc-Hr; whole genome shotgun sequence.	305236	300364	616617	616474	18920	1857611	0.16	0.16	0.33	0.33	0.01	0.66	0.9212	0.0082	0.9919	1.9094	966	935	1901	273619	236148	555694	516952	1582413	0.17	0.15	0.35	0.33	0.67	0.8662	0.207	0.8232	1.8933	1223	932	905	1837	268116	231196	545301	506528	1551141	0.17	0.15	0.35	0.33	0.68	0.8658	0.2082	0.8223	1.8924	1206	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	1	54	43	103	112	312	0.17	0.14	0.33	0.36	0	0.69	0.8833	0.1553	0.858	1.8904	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	21	15	36	496	548	807	887	2738	0.18	0.2	0.29	0.33	0	0.62	0.8728	0.192	0.8378	1.9411	3	3	1153	846	1134	1378	4511	0.24	0.19	0.27	0.3	0	0.57	0.9122	0.2116	0.8106	1.975	9065	7887	796	914	2405	29731	1545	2632	6750	5671	665	12743	695	14514	1226	11097	1007	10906	16687	1224	10192	3876	31870	2098	9574	14120	484	1637	916	3219	15728	1859	35206	946	937	42458	9429	9704	12548	26927	6272	18765	2414	29251	2170	2009	8353	810	1313	494	13057	27225	422	438	592	794	344	9195	12739	1385	1724	393	1098	3902
GCF_001368915.1	NZ_CSTE01000003	NZ_CSTE01000003.1	Haloferax massiliensis strain Arc-Hr; whole genome shotgun sequence.	66254	66724	130986	130688	0	394652	0.17	0.17	0.33	0.33	0	0.66	0.9166	0.0047	0.9953	1.9219	174	161	335	59828	51115	116941	112166	340050	0.18	0.15	0.34	0.33	0.67	0.8726	0.1905	0.8357	1.9025	288	173	160	333	59259	50694	115915	111155	337023	0.18	0.15	0.34	0.33	0.67	0.8726	0.1905	0.8357	1.9025	284	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1987	1408	149	202	499	6055	294	655	1288	1426	128	2675	119	3767	339	2676	193	2423	3797	229	2439	904	6563	457	2094	3124	94	440	209	1003	3290	363	7306	281	198	8821	2173	1950	2946	4904	1748	3246	515	5766	532	465	2307	219	331	112	2992	6103	86	75	155	140	48	2246	3340	250	419	56	229	1093
GCF_001368915.1	NZ_CSTE01000004	NZ_CSTE01000004.1	Haloferax massiliensis strain Arc-Hr; whole genome shotgun sequence.	44057	43333	69665	70762	0	227817	0.19	0.19	0.31	0.31	0	0.62	0.9284	0.0161	0.984	1.9605	89	83	172	35697	31155	57821	57382	182055	0.2	0.18	0.31	0.31	0.63	0.887	0.1786	0.8446	1.9363	103	86	82	168	35106	30659	57050	56627	179442	0.2	0.17	0.31	0.31	0.63	0.887	0.1795	0.844	1.9353	103	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1032	722	293	307	596	2859	384	470	744	939	246	1601	246	2015	350	1453	204	1144	1951	251	1219	774	2966	653	1209	1487	149	361	253	825	1868	374	3358	238	321	3867	1075	898	1616	2007	912	1154	382	2366	232	505	1286	173	181	145	1534	2736	143	100	120	253	31	1065	1622	318	414	33	103	681
GCF_001368915.1	NZ_CSTE01000005	NZ_CSTE01000005.1	Haloferax massiliensis strain Arc-Hr; whole genome shotgun sequence.	55477	55105	107013	107248	1053	325896	0.17	0.17	0.33	0.33	0	0.66	0.9189	0.0045	0.9956	1.9236	160	126	286	46768	41757	94545	89194	272264	0.17	0.16	0.34	0.33	0.67	0.871	0.1864	0.839	1.9011	274	156	120	276	45050	40025	90749	85779	261603	0.17	0.16	0.34	0.33	0.67	0.8708	0.1864	0.839	1.9007	190	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1410	1027	146	182	401	4383	274	474	1076	991	123	2061	136	2873	276	1884	190	1958	2848	229	1756	679	5400	388	1588	2511	106	324	196	734	2407	335	5940	204	181	6631	1575	1473	2280	4034	1316	2576	444	4451	358	417	1704	187	184	96	2479	4961	74	61	165	105	55	1836	2318	252	352	46	175	905
GCF_001368915.1	NZ_CSTE01000006	NZ_CSTE01000006.1	Haloferax massiliensis strain Arc-Hr; whole genome shotgun sequence.	45243	42793	90482	91615	0	270133	0.17	0.16	0.33	0.34	0	0.67	0.9147	0.0341	0.9667	1.9105	151	144	295	39587	34567	83463	76063	233680	0.17	0.15	0.35	0.33	0.68	0.8666	0.2155	0.8171	1.8909	202	148	138	286	39414	34407	83181	75768	232770	0.17	0.15	0.35	0.33	0.68	0.8662	0.2178	0.8151	1.8892	202	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2	6	8	110	123	167	186	586	0.19	0.2	0.29	0.32	0	0.61	0.8736	0.1246	0.8893	1.9532	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1384	1187	100	140	313	4259	225	370	1090	872	76	1781	78	2143	156	1736	122	1684	2547	144	1597	579	4873	236	1454	2193	54	230	113	467	2342	245	5456	139	126	6367	1398	1529	1853	4317	1030	2866	328	4566	307	288	1189	107	140	73	1922	4102	50	58	94	104	52	1255	1893	185	244	53	181	528
GCF_001368915.1	NZ_CSTE01000007	NZ_CSTE01000007.1	Haloferax massiliensis strain Arc-Hr; whole genome shotgun sequence.	9903	9905	21862	21861	0	63531	0.16	0.16	0.34	0.34	0	0.69	0.8985	0.0001	0.9999	1.8952	28	28	56	9800	8152	21280	19340	58572	0.17	0.14	0.36	0.33	0.69	0.867	0.1843	0.8379	1.8848	98	28	28	56	9800	8152	21280	19340	58572	0.17	0.14	0.36	0.33	0.69	0.867	0.1843	0.8379	1.8848	98	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	340	224	4	16	58	1112	32	94	220	164	12	382	6	536	28	476	8	416	678	26	430	78	1196	40	370	588	16	32	20	88	638	50	1304	36	24	1622	408	384	552	1116	304	680	94	1368	98	32	362	12	24	8	460	1216	14	6	14	18	2	296	460	14	58	14	40	106
GCF_001368915.1	NZ_CSTE01000008	NZ_CSTE01000008.1	Haloferax massiliensis strain Arc-Hr; whole genome shotgun sequence.	6642	6760	13467	13196	0	40065	0.17	0.17	0.34	0.33	0	0.67	0.9136	0.019	0.9812	1.9194	27	18	45	5976	5369	12018	11405	34768	0.18	0.16	0.34	0.32	0.66	0.8663	0.2091	0.821	1.893	20	27	17	44	5740	5158	11391	10789	33078	0.18	0.16	0.34	0.32	0.66	0.8666	0.2124	0.8184	1.8944	16	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	195	142	18	18	48	603	38	63	108	141	23	238	27	306	32	202	31	247	347	53	229	84	637	54	183	282	24	46	32	76	329	50	746	42	41	885	185	213	298	568	158	377	70	611	44	39	205	14	28	20	259	546	18	12	15	12	10	223	280	22	48	8	26	97