Assembly Assembly | Locus_ID Locus_ID | Version Version | Definition Sequence description | bp_chromo_A Total number of 'A' nucleotides in the whole sequence | bp_chromo_T Total number of 'T' nucleotides in the whole sequence | bp_chromo_C Total number of 'C' nucleotides in the whole sequence | bp_chromo_G Total number of 'G' nucleotides in the whole sequence | bp_chromo_N Total number of 'N' nucleotides in the whole sequence | bp_chromo_tot Total number of nucleotides in the whole sequence | fr_chromo_A Frequency of 'A' nucleotides in the whole sequence | fr_chromo_T Frequency of 'T' nucleotides in the whole sequence | fr_chromo_C Frequency of 'C' nucleotides in the whole sequence | fr_chromo_G Frequency of 'G' nucleotides in the whole sequence | fr_chromo_N Frequency of 'N' nucleotides in the whole sequence | GC_chromo Percentage of āGā + āCā nucleotides in the whole sequence | topo_entropy_chromo Topological entropy of the whole sequence | chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence | chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee | shannon_chromo Shannon entropy of the whole sequence | n_gene_pos Number of genes in the positive strand | n_gene_neg Number of genes in the negative strand | n_gene_tot Total number of genes in the chromosome | bp_gene_A Number of 'A' bases in total genes | bp_gene_T Number of 'T' bases in total genes | bp_gene_C Number of 'C' bases in total genes | bp_gene_G Number of 'G' bases in total genes | bp_gene_N Number of 'N' bases in total genes | bp_gene_tot Total number of bases in total genes | fr_gene_A Frequency of 'A' bases among total gene bases | fr_gene_T Frequency of 'T' bases among total gene bases | fr_gene_C Frequency of 'C' bases among total gene bases | fr_gene_G Frequency of 'G' bases among total gene bases | fr_gene_N Frequency of 'N' bases among total gene bases | GC_gene Percentage of 'G' and 'C' bases in total genes | topo_entropy_gene Topological entropy calculated from total gene sequences | chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes | chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes | shannon_gene Shannon entropy score for total genes | bp_gene_overlap_tot Number of bases overlapping between genes on two strands | n_cds_pos Number of CDS in the positive strand | n_cds_neg Number of CDS in the negative strand | n_cds_tot Total number of CDS in the chromosome | bp_cds_A Number of 'A' bases in total CDS (coding sequences) | bp_cds_T Number of 'T' bases in total CDS | bp_cds_C Number of 'C' bases in total CDS | bp_cds_G Number of 'G' bases in total CDS | bp_cds_N Number of 'N' bases in total CDS | bp_cds_tot Total bases in total CDS | fr_cds_A Frequency of 'A' bases among total CDS bases | fr_cds_T Frequency of 'T' bases among total CDS bases | fr_cds_C Frequency of 'C' bases among total CDS bases | fr_cds_G Frequency of 'G' bases among total CDS bases | fr_cds_N Frequency of 'N' bases among total CDS bases | GC_cds Percentage of 'G' and 'C' bases in total CDS | topo_entropy_cds Topological entropy calculated from total CDS sequences | chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS | chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS | shannon_cds Shannon entropy score for total CDS | bp_cds_overlap_tot Number of bases overlapping between CDS on two strands | bp_cds_intron_A Number of 'A' bases in total introns between CDS | bp_cds_intron_T Number of 'T' bases in total introns between CDS | bp_cds_intron_C Number of 'C' bases in total introns between CDS | bp_cds_intron_G Number of 'G' bases in total introns between CDS | bp_cds_intron_N Number of 'N' bases in total introns between CDS | bp_cds_intron_tot Total bases in total introns between CDS | fr_cds_intron_A Frequency of 'A' bases in total introns between CDS | fr_cds_intron_T Frequency of 'T' bases in total introns between CDS | fr_cds_intron_C Frequency of 'C' bases in total introns between CDS | fr_cds_intron_G Frequency of 'G' bases in total introns between CDS | fr_cds_intron_N Frequency of 'N' bases in total introns between CDS | GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS | topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS | chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS | chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS | shannon_cds_intron Shannon entropy score for total introns between CDS | bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands | n_ncRNA_pos Number of ncRNA in the positive strand | n_ncRNA_neg Number of ncRNA in the negative strand | n_ncRNA_tot Total number of ncRNA in the chromosome | bp_ncRNA_A Number of 'A' bases in total ncRNA | bp_ncRNA_T bp_ncRNA_T | bp_ncRNA_C Number of 'C' bases in total ncRNA | bp_ncRNA_G Number of 'G' bases in total ncRNA | bp_ncRNA_N Number of 'N' bases in total ncRNA | bp_ncRNA_tot Total bases in total ncRNA | fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases | fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases | fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases | fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases | fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases | GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA | topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences | chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA | chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA | shannon_ncRNA Shannon entropy score for total ncRNA | bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands | bp_nc_intron_A Number of 'A' bases in total introns between ncRNA | bp_nc_intron_T Number of 'T' bases in total introns between ncRNA | bp_nc_intron_C Number of 'C' bases in total introns between ncRNA | bp_nc_intron_G Number of 'G' bases in total introns between ncRNA | bp_nc_intron_N Number of 'N' bases in total introns between ncRNA | bp_nc_intron_tot Total bases in total introns between ncRNA | fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA | fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA | fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA | fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA | fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA | GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA | topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA | chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA | chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA | shannon_nc_intron Shannon entropy score for total introns between ncRNA | bp_nc_intron_overlap_tot Number of bases overlapping between introns between ncRNA on two strands | n_tRNA_pos Number of tRNA in the positive strand | n_tRNA_neg Number of tRNA in the negative strand | n_tRNA_tot Total number of tRNA in the chromosome | bp_tRNA_A Number of 'A' bases in total tRNA | bp_tRNA_T Number of 'T' bases in total tRNA | bp_tRNA_C Number of 'C' bases in total tRNA | bp_tRNA_G Number of 'G' bases in total tRNA | bp_tRNA_N Number of 'N' bases in total tRNA | bp_tRNA_tot Total bases in total tRNA | fr_tRNA_A Frequency of 'A' bases among total tRNA bases | fr_tRNA_T Frequency of 'T' bases among total tRNA bases | fr_tRNA_C Frequency of 'C' bases among total tRNA bases | fr_tRNA_G Frequency of 'G' bases among total tRNA bases | fr_tRNA_N Frequency of 'N' bases among total tRNA bases | GC_tRNA Percentage of 'G' and 'C' bases in total tRNA | topo_entropy_tRNA Topological entropy calculated from total tRNA sequences | chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA | chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA | shannon_tRNA Shannon entropy score for total tRNA | bp_tRNA_overlap_tot Number of bases overlapping between tRNA on two strands | n_rRNA_pos Number of rRNA in the positive strand | n_rRNA_neg Number of rRNA in the negative strand | n_rRNA_tot Total number of rRNA in the chromosome | bp_rRNA_A Number of 'A' bases in total rRNA | bp_rRNA_T Number of 'T' bases in total rRNA | bp_rRNA_C Number of 'C' bases in total rRNA | bp_rRNA_G Number of 'G' bases in total rRNA | bp_rRNA_N Number of 'N' bases in total rRNA | bp_rRNA_tot Total bases in total rRNA | fr_rRNA_A Frequency of 'A' bases among total rRNA bases | fr_rRNA_T Frequency of 'T' bases among total rRNA bases | fr_rRNA_C Frequency of 'C' bases among total rRNA bases | fr_rRNA_G Frequency of 'G' bases among total rRNA bases | fr_rRNA_N Frequency of 'N' bases among total rRNA bases | GC_rRNA Percentage of 'G' and 'C' bases in total rRNA | topo_entropy_rRNA Topological entropy calculated from total rRNA sequences | chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA | chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA | shannon_rRNA Shannon entropy score for total rRNA | bp_rRNA_overlap_tot Number of bases overlapping between rRNA on two strands | ATG ATG | AAG AAG | GTA GTA | ACT ACT | GCA GCA | GAG GAG | GCT GCT | ATT ATT | TCC TCC | TGG TGG | AAT AAT | GAA GAA | TCA TCA | ACG ACG | AGT AGT | AAC AAC | TCT TCT | GTG GTG | TTC TTC | TTT TTT | CTG CTG | GGT GGT | CTC CTC | GAT GAT | CAG CAG | ACC ACC | CTA CTA | TTG TTG | TAT TAT | GGA GGA | ATC ATC | CTT CTT | GTC GTC | ATA ATA | ACA ACA | GAC GAC | CAC CAC | CCC CCC | TAC TAC | GCC GCC | AGC AGC | CGC CGC | AAA AAA | GGC GGC | TGC TGC | GTT GTT | GGG GGG | AGA AGA | TGT TGT | CAT CAT | TCG TCG | GCG GCG | TTA TTA | CCT CCT | AGG AGG | CCA CCA | TAG TAG | CGG CGG | CCG CCG | CGT CGT | CAA CAA | TAA TAA | TGA TGA | CGA CGA |
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GCF_005406325.1 | NZ_CP039139 | NZ_CP039139.1 | Haloferax mediterranei ATCC 33500 chromosome; complete genome. | 574544 | 571942 | 899965 | 902436 | 0 | 2948887 | 0.19 | 0.19 | 0.31 | 0.31 | 0 | 0.61 | 0.9382 | 0.0036 | 0.9964 | 1.964 | 1546 | 1495 | 3041 | 514033 | 443588 | 813658 | 767935 | 0 | 2539214 | 0.2 | 0.18 | 0.31 | 0.3 | 0 | 0.62 | 0.8856 | 0.1943 | 0.8325 | 1.9456 | 1740 | 1506 | 1436 | 2942 | 506114 | 436557 | 802606 | 756483 | 0 | 2501760 | 0.2 | 0.18 | 0.32 | 0.3 | 0 | 0.62 | 0.8857 | 0.1949 | 0.832 | 1.9454 | 1712 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | NA | 0 | 1 | 1 | 2 | 146 | 102 | 232 | 263 | 0 | 743 | 0.19 | 0.14 | 0.31 | 0.35 | 0 | 0.67 | 0.8879 | 0.2261 | 0.8039 | 1.908 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 23 | 33 | 56 | 769 | 848 | 1227 | 1376 | 0 | 4220 | 0.18 | 0.2 | 0.29 | 0.33 | 0 | 0.62 | 0.8735 | 0.1711 | 0.8503 | 1.9437 | 0 | 3 | 3 | 6 | 2329 | 1708 | 2248 | 2733 | 0 | 9018 | 0.24 | 0.19 | 0.27 | 0.3 | 0 | 0.57 | 0.9158 | 0.1863 | 0.8342 | 1.9749 | 0 | 14894 | 11729 | 3821 | 5023 | 13788 | 36242 | 8005 | 7936 | 10395 | 9160 | 3214 | 32571 | 3183 | 24091 | 4665 | 18406 | 3505 | 15025 | 25626 | 3628 | 12791 | 15866 | 46900 | 10210 | 14980 | 20067 | 1716 | 4258 | 3062 | 10717 | 26601 | 7012 | 47802 | 1681 | 5306 | 58430 | 14912 | 12231 | 18769 | 32203 | 8672 | 21981 | 7103 | 30226 | 2604 | 9501 | 12435 | 1671 | 2918 | 1838 | 19339 | 31626 | 1446 | 2113 | 941 | 4156 | 535 | 10510 | 19138 | 6583 | 5779 | 1012 | 1400 | 9971 |
GCF_005406325.1 | NZ_CP039142 | NZ_CP039142.1 | Haloferax mediterranei ATCC 33500 plasmid pHME132; complete sequence. | 27716 | 28681 | 38124 | 37454 | 0 | 131975 | 0.21 | 0.22 | 0.29 | 0.28 | 0 | 0.57 | 0.9429 | 0.026 | 0.9744 | 1.9846 | 55 | 64 | 119 | 20260 | 17390 | 27116 | 27799 | 0 | 92565 | 0.22 | 0.19 | 0.29 | 0.3 | 0 | 0.59 | 0.8938 | 0.1807 | 0.843 | 1.9562 | 53 | 53 | 63 | 116 | 20069 | 17177 | 26792 | 27504 | 0 | 91542 | 0.22 | 0.19 | 0.29 | 0.3 | 0 | 0.59 | 0.8943 | 0.1823 | 0.8419 | 1.9561 | 49 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 525 | 458 | 219 | 280 | 509 | 1602 | 362 | 333 | 305 | 402 | 226 | 982 | 219 | 737 | 224 | 593 | 159 | 640 | 865 | 201 | 619 | 461 | 1329 | 642 | 687 | 670 | 132 | 255 | 221 | 433 | 936 | 303 | 1315 | 157 | 287 | 1789 | 537 | 424 | 733 | 898 | 411 | 522 | 291 | 884 | 98 | 388 | 543 | 137 | 140 | 135 | 552 | 979 | 101 | 138 | 100 | 257 | 34 | 532 | 571 | 279 | 276 | 21 | 61 | 395 |
GCF_005406325.1 | NZ_CP039141 | NZ_CP039141.1 | Haloferax mediterranei ATCC 33500 plasmid pHME322; complete sequence. | 67224 | 68303 | 93099 | 93281 | 0 | 321907 | 0.21 | 0.21 | 0.29 | 0.29 | 0 | 0.58 | 0.9443 | 0.0089 | 0.9911 | 1.9819 | 134 | 136 | 270 | 59429 | 50756 | 81117 | 80630 | 0 | 271932 | 0.22 | 0.19 | 0.29 | 0.29 | 0 | 0.59 | 0.8987 | 0.1774 | 0.8454 | 1.9648 | 310 | 133 | 133 | 266 | 58917 | 50285 | 80457 | 79909 | 0 | 269568 | 0.22 | 0.19 | 0.3 | 0.29 | 0 | 0.59 | 0.8987 | 0.1771 | 0.8457 | 1.9648 | 298 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 1 | 1 | 17 | 17 | 20 | 30 | 0 | 84 | 0.2 | 0.2 | 0.24 | 0.36 | 0 | 0.6 | 0.887 | 0.2 | 0.8333 | 1.9564 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 1600 | 1144 | 615 | 686 | 1780 | 3528 | 901 | 1124 | 990 | 1174 | 536 | 3321 | 483 | 2807 | 757 | 2109 | 383 | 1628 | 2771 | 550 | 1579 | 1674 | 4317 | 1492 | 1622 | 2089 | 383 | 625 | 506 | 1617 | 2688 | 892 | 4257 | 326 | 902 | 5228 | 1556 | 1077 | 2111 | 2512 | 1132 | 1331 | 981 | 2562 | 281 | 1272 | 1689 | 277 | 384 | 313 | 2114 | 3022 | 284 | 285 | 147 | 738 | 44 | 1376 | 2146 | 698 | 900 | 72 | 149 | 1318 |
GCF_005406325.1 | NZ_CP039140 | NZ_CP039140.1 | Haloferax mediterranei ATCC 33500 plasmid pHME505; complete sequence. | 107207 | 107241 | 145283 | 144973 | 0 | 504704 | 0.21 | 0.21 | 0.29 | 0.29 | 0 | 0.58 | 0.9444 | 0.0012 | 0.9988 | 1.9837 | 214 | 220 | 434 | 86694 | 73770 | 117537 | 116721 | 0 | 394722 | 0.22 | 0.19 | 0.29 | 0.29 | 0 | 0.59 | 0.8959 | 0.1835 | 0.8408 | 1.9638 | 308 | 210 | 215 | 425 | 85425 | 72729 | 116052 | 115149 | 0 | 389355 | 0.22 | 0.19 | 0.29 | 0.29 | 0 | 0.59 | 0.8959 | 0.1836 | 0.8408 | 1.9635 | 308 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 2148 | 1606 | 917 | 1136 | 2388 | 5491 | 1546 | 1507 | 1433 | 1416 | 819 | 5040 | 735 | 3788 | 1085 | 2977 | 617 | 2320 | 3884 | 749 | 2085 | 2544 | 6265 | 2400 | 2414 | 2912 | 476 | 920 | 799 | 2187 | 4002 | 1267 | 6549 | 487 | 1287 | 8126 | 2319 | 1493 | 3001 | 3822 | 1583 | 2144 | 1280 | 3688 | 398 | 1830 | 2202 | 436 | 544 | 474 | 2753 | 4234 | 390 | 466 | 284 | 991 | 91 | 1903 | 2759 | 1083 | 1210 | 132 | 205 | 1747 |