Assembly Assembly | Locus_ID Locus_ID | Version Version | Definition Sequence description | bp_chromo_A Total number of 'A' nucleotides in the whole sequence | bp_chromo_T Total number of 'T' nucleotides in the whole sequence | bp_chromo_C Total number of 'C' nucleotides in the whole sequence | bp_chromo_G Total number of 'G' nucleotides in the whole sequence | bp_chromo_N Total number of 'N' nucleotides in the whole sequence | bp_chromo_tot Total number of nucleotides in the whole sequence | fr_chromo_A Frequency of 'A' nucleotides in the whole sequence | fr_chromo_T Frequency of 'T' nucleotides in the whole sequence | fr_chromo_C Frequency of 'C' nucleotides in the whole sequence | fr_chromo_G Frequency of 'G' nucleotides in the whole sequence | fr_chromo_N Frequency of 'N' nucleotides in the whole sequence | GC_chromo Percentage of āGā + āCā nucleotides in the whole sequence | topo_entropy_chromo Topological entropy of the whole sequence | chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence | chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee | shannon_chromo Shannon entropy of the whole sequence | n_gene_pos Number of genes in the positive strand | n_gene_neg Number of genes in the negative strand | n_gene_tot Total number of genes in the chromosome | bp_gene_A Number of 'A' bases in total genes | bp_gene_T Number of 'T' bases in total genes | bp_gene_C Number of 'C' bases in total genes | bp_gene_G Number of 'G' bases in total genes | bp_gene_N Number of 'N' bases in total genes | bp_gene_tot Total number of bases in total genes | fr_gene_A Frequency of 'A' bases among total gene bases | fr_gene_T Frequency of 'T' bases among total gene bases | fr_gene_C Frequency of 'C' bases among total gene bases | fr_gene_G Frequency of 'G' bases among total gene bases | fr_gene_N Frequency of 'N' bases among total gene bases | GC_gene Percentage of 'G' and 'C' bases in total genes | topo_entropy_gene Topological entropy calculated from total gene sequences | chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes | chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes | shannon_gene Shannon entropy score for total genes | bp_gene_overlap_tot Number of bases overlapping between genes on two strands | n_cds_pos Number of CDS in the positive strand | n_cds_neg Number of CDS in the negative strand | n_cds_tot Total number of CDS in the chromosome | bp_cds_A Number of 'A' bases in total CDS (coding sequences) | bp_cds_T Number of 'T' bases in total CDS | bp_cds_C Number of 'C' bases in total CDS | bp_cds_G Number of 'G' bases in total CDS | bp_cds_N Number of 'N' bases in total CDS | bp_cds_tot Total bases in total CDS | fr_cds_A Frequency of 'A' bases among total CDS bases | fr_cds_T Frequency of 'T' bases among total CDS bases | fr_cds_C Frequency of 'C' bases among total CDS bases | fr_cds_G Frequency of 'G' bases among total CDS bases | fr_cds_N Frequency of 'N' bases among total CDS bases | GC_cds Percentage of 'G' and 'C' bases in total CDS | topo_entropy_cds Topological entropy calculated from total CDS sequences | chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS | chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS | shannon_cds Shannon entropy score for total CDS | bp_cds_overlap_tot Number of bases overlapping between CDS on two strands | bp_cds_intron_A Number of 'A' bases in total introns between CDS | bp_cds_intron_T Number of 'T' bases in total introns between CDS | bp_cds_intron_C Number of 'C' bases in total introns between CDS | bp_cds_intron_G Number of 'G' bases in total introns between CDS | bp_cds_intron_N Number of 'N' bases in total introns between CDS | bp_cds_intron_tot Total bases in total introns between CDS | fr_cds_intron_A Frequency of 'A' bases in total introns between CDS | fr_cds_intron_T Frequency of 'T' bases in total introns between CDS | fr_cds_intron_C Frequency of 'C' bases in total introns between CDS | fr_cds_intron_G Frequency of 'G' bases in total introns between CDS | fr_cds_intron_N Frequency of 'N' bases in total introns between CDS | GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS | topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS | chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS | chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS | shannon_cds_intron Shannon entropy score for total introns between CDS | bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands | n_ncRNA_pos Number of ncRNA in the positive strand | n_ncRNA_neg Number of ncRNA in the negative strand | n_ncRNA_tot Total number of ncRNA in the chromosome | bp_ncRNA_A Number of 'A' bases in total ncRNA | bp_ncRNA_T bp_ncRNA_T | bp_ncRNA_C Number of 'C' bases in total ncRNA | bp_ncRNA_G Number of 'G' bases in total ncRNA | bp_ncRNA_N Number of 'N' bases in total ncRNA | bp_ncRNA_tot Total bases in total ncRNA | fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases | fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases | fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases | fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases | fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases | GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA | topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences | chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA | chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA | shannon_ncRNA Shannon entropy score for total ncRNA | bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands | bp_nc_intron_A Number of 'A' bases in total introns between ncRNA | bp_nc_intron_T Number of 'T' bases in total introns between ncRNA | bp_nc_intron_C Number of 'C' bases in total introns between ncRNA | bp_nc_intron_G Number of 'G' bases in total introns between ncRNA | bp_nc_intron_N Number of 'N' bases in total introns between ncRNA | bp_nc_intron_tot Total bases in total introns between ncRNA | fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA | fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA | fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA | fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA | fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA | GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA | topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA | chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA | chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA | shannon_nc_intron Shannon entropy score for total introns between ncRNA | bp_nc_intron_overlap_tot Number of bases overlapping between introns between ncRNA on two strands | n_tRNA_pos Number of tRNA in the positive strand | n_tRNA_neg Number of tRNA in the negative strand | n_tRNA_tot Total number of tRNA in the chromosome | bp_tRNA_A Number of 'A' bases in total tRNA | bp_tRNA_T Number of 'T' bases in total tRNA | bp_tRNA_C Number of 'C' bases in total tRNA | bp_tRNA_G Number of 'G' bases in total tRNA | bp_tRNA_N Number of 'N' bases in total tRNA | bp_tRNA_tot Total bases in total tRNA | fr_tRNA_A Frequency of 'A' bases among total tRNA bases | fr_tRNA_T Frequency of 'T' bases among total tRNA bases | fr_tRNA_C Frequency of 'C' bases among total tRNA bases | fr_tRNA_G Frequency of 'G' bases among total tRNA bases | fr_tRNA_N Frequency of 'N' bases among total tRNA bases | GC_tRNA Percentage of 'G' and 'C' bases in total tRNA | topo_entropy_tRNA Topological entropy calculated from total tRNA sequences | chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA | chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA | shannon_tRNA Shannon entropy score for total tRNA | bp_tRNA_overlap_tot Number of bases overlapping between tRNA on two strands | n_rRNA_pos Number of rRNA in the positive strand | n_rRNA_neg Number of rRNA in the negative strand | n_rRNA_tot Total number of rRNA in the chromosome | bp_rRNA_A Number of 'A' bases in total rRNA | bp_rRNA_T Number of 'T' bases in total rRNA | bp_rRNA_C Number of 'C' bases in total rRNA | bp_rRNA_G Number of 'G' bases in total rRNA | bp_rRNA_N Number of 'N' bases in total rRNA | bp_rRNA_tot Total bases in total rRNA | fr_rRNA_A Frequency of 'A' bases among total rRNA bases | fr_rRNA_T Frequency of 'T' bases among total rRNA bases | fr_rRNA_C Frequency of 'C' bases among total rRNA bases | fr_rRNA_G Frequency of 'G' bases among total rRNA bases | fr_rRNA_N Frequency of 'N' bases among total rRNA bases | GC_rRNA Percentage of 'G' and 'C' bases in total rRNA | topo_entropy_rRNA Topological entropy calculated from total rRNA sequences | chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA | chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA | shannon_rRNA Shannon entropy score for total rRNA | bp_rRNA_overlap_tot Number of bases overlapping between rRNA on two strands | ATG ATG | AAG AAG | GTA GTA | ACT ACT | GCA GCA | GAG GAG | GCT GCT | ATT ATT | TCC TCC | TGG TGG | AAT AAT | GAA GAA | TCA TCA | ACG ACG | AGT AGT | AAC AAC | TCT TCT | GTG GTG | TTC TTC | TTT TTT | CTG CTG | GGT GGT | CTC CTC | GAT GAT | CAG CAG | ACC ACC | CTA CTA | TTG TTG | TAT TAT | GGA GGA | ATC ATC | CTT CTT | GTC GTC | ATA ATA | ACA ACA | GAC GAC | CAC CAC | CCC CCC | TAC TAC | GCC GCC | AGC AGC | CGC CGC | AAA AAA | GGC GGC | TGC TGC | GTT GTT | GGG GGG | AGA AGA | TGT TGT | CAT CAT | TCG TCG | GCG GCG | TTA TTA | CCT CCT | AGG AGG | CCA CCA | TAG TAG | CGG CGG | CCG CCG | CGT CGT | CAA CAA | TAA TAA | TGA TGA | CGA CGA |
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GCF_000723845.1 | NZ_LK053000 | NZ_LK053000.1 | Haloferax prahovense strain Arc-Hr; whole genome shotgun sequence. | 500035 | 510524 | 1001604 | 1000694 | 60 | 3012917 | 0.17 | 0.17 | 0.33 | 0.33 | 0 | 0.66 | 0.9273 | 0.0108 | 0.9893 | 1.9203 | 1533 | 1604 | 3137 | 460046 | 400738 | 920163 | 853552 | 0 | 2634499 | 0.18 | 0.16 | 0.34 | 0.32 | 0 | 0.67 | 0.8684 | 0.2054 | 0.8244 | 1.8989 | 1897 | 1487 | 1561 | 3048 | 451721 | 393840 | 907105 | 840108 | 0 | 2592774 | 0.18 | 0.16 | 0.35 | 0.32 | 0 | 0.67 | 0.868 | 0.206 | 0.824 | 1.8979 | 1862 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 2 | 0 | 2 | 137 | 97 | 241 | 269 | 0 | 744 | 0.18 | 0.13 | 0.32 | 0.36 | 0 | 0.69 | 0.8777 | 0.2157 | 0.8114 | 1.8897 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 29 | 26 | 55 | 747 | 839 | 1217 | 1352 | 0 | 4155 | 0.18 | 0.2 | 0.29 | 0.33 | 0 | 0.62 | 0.876 | 0.1694 | 0.8514 | 1.9459 | 0 | 5 | 3 | 8 | 2731 | 2018 | 2683 | 3284 | 0 | 10716 | 0.24 | 0.19 | 0.27 | 0.3 | 0 | 0.57 | 0.9063 | 0.2311 | 0.7956 | 1.9738 | 0 | 14896 | 12749 | 1582 | 2102 | 4810 | 47659 | 3438 | 4732 | 11449 | 9415 | 1299 | 21568 | 1440 | 25026 | 2318 | 18817 | 1926 | 18218 | 27868 | 2170 | 16663 | 8083 | 53277 | 4013 | 16087 | 24107 | 878 | 2907 | 1557 | 6135 | 26187 | 3233 | 58688 | 1572 | 1891 | 69157 | 15470 | 15775 | 20615 | 44184 | 10692 | 29954 | 4219 | 46884 | 3465 | 3997 | 13514 | 1267 | 2077 | 833 | 22016 | 45381 | 751 | 882 | 958 | 1511 | 553 | 14517 | 21167 | 2857 | 3188 | 679 | 1816 | 7119 |
GCF_000723845.1 | NZ_LK053001 | NZ_LK053001.1 | Haloferax prahovense strain Arc-Hr; whole genome shotgun sequence. | 80926 | 80317 | 150802 | 149809 | 0 | 461854 | 0.18 | 0.17 | 0.33 | 0.32 | 0 | 0.65 | 0.9234 | 0.0071 | 0.9929 | 1.9333 | 193 | 187 | 380 | 72014 | 61807 | 134999 | 129705 | 0 | 398525 | 0.18 | 0.16 | 0.34 | 0.32 | 0 | 0.66 | 0.8766 | 0.1875 | 0.8381 | 1.9119 | 272 | 190 | 183 | 373 | 70973 | 60968 | 133203 | 128036 | 0 | 393180 | 0.18 | 0.16 | 0.34 | 0.32 | 0 | 0.66 | 0.8764 | 0.1878 | 0.8379 | 1.9116 | 268 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 2292 | 1644 | 285 | 399 | 728 | 6907 | 543 | 837 | 1493 | 1703 | 232 | 3208 | 215 | 4375 | 470 | 3202 | 279 | 2755 | 4426 | 300 | 2799 | 1393 | 7401 | 682 | 2568 | 3672 | 205 | 532 | 275 | 1273 | 4048 | 528 | 8171 | 364 | 365 | 9965 | 2374 | 2222 | 3363 | 5451 | 2134 | 3546 | 591 | 6577 | 576 | 725 | 2535 | 221 | 335 | 142 | 3491 | 6752 | 134 | 121 | 184 | 274 | 51 | 2442 | 3617 | 410 | 551 | 67 | 255 | 1385 |
GCF_000723845.1 | NZ_LK053002 | NZ_LK053002.1 | Haloferax prahovense strain Arc-Hr; whole genome shotgun sequence. | 52917 | 53618 | 105523 | 106305 | 0 | 318363 | 0.17 | 0.17 | 0.33 | 0.33 | 0 | 0.67 | 0.9172 | 0.0103 | 0.9898 | 1.9196 | 139 | 155 | 294 | 47640 | 42237 | 97248 | 90851 | 0 | 277976 | 0.17 | 0.15 | 0.34 | 0.33 | 0 | 0.67 | 0.8707 | 0.1857 | 0.8387 | 1.9023 | 213 | 137 | 153 | 290 | 47482 | 42014 | 96852 | 90444 | 0 | 276792 | 0.17 | 0.15 | 0.35 | 0.33 | 0 | 0.67 | 0.8707 | 0.1843 | 0.8397 | 1.9023 | 213 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 1 | 1 | 18 | 14 | 21 | 22 | 0 | 75 | 0.24 | 0.19 | 0.28 | 0.29 | 0 | 0.57 | 0.8987 | 0.1483 | 0.8662 | 1.9794 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 1512 | 1087 | 147 | 234 | 407 | 4672 | 321 | 488 | 1136 | 1021 | 125 | 2112 | 142 | 2996 | 259 | 2079 | 185 | 2019 | 3031 | 198 | 1787 | 826 | 5711 | 385 | 1648 | 2682 | 80 | 315 | 174 | 779 | 2573 | 336 | 6199 | 206 | 184 | 7158 | 1785 | 1621 | 2463 | 4319 | 1362 | 2834 | 440 | 4784 | 411 | 454 | 1753 | 166 | 197 | 69 | 2686 | 5196 | 62 | 80 | 138 | 134 | 57 | 1853 | 2490 | 254 | 353 | 43 | 190 | 856 |
GCF_000723845.1 | NZ_LK053003 | NZ_LK053003.1 | Haloferax prahovense strain Arc-Hr; whole genome shotgun sequence. | 21498 | 22287 | 26780 | 26024 | 0 | 96589 | 0.22 | 0.23 | 0.28 | 0.27 | 0 | 0.55 | 0.9482 | 0.0323 | 0.9682 | 1.9935 | 27 | 48 | 75 | 19261 | 16098 | 21236 | 22218 | 0 | 78813 | 0.25 | 0.2 | 0.27 | 0.28 | 0 | 0.55 | 0.9045 | 0.1702 | 0.8506 | 1.9763 | 87 | 25 | 48 | 73 | 18450 | 15371 | 20156 | 21170 | 0 | 75147 | 0.25 | 0.2 | 0.27 | 0.28 | 0 | 0.55 | 0.9041 | 0.1728 | 0.8484 | 1.9762 | 86 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 339 | 412 | 201 | 282 | 538 | 1305 | 404 | 433 | 216 | 308 | 276 | 976 | 275 | 631 | 296 | 533 | 205 | 351 | 632 | 216 | 386 | 395 | 1000 | 825 | 619 | 396 | 140 | 209 | 291 | 333 | 639 | 368 | 742 | 98 | 325 | 1264 | 398 | 233 | 538 | 418 | 267 | 372 | 357 | 421 | 77 | 474 | 396 | 115 | 153 | 182 | 459 | 668 | 117 | 146 | 67 | 302 | 17 | 464 | 409 | 311 | 360 | 25 | 31 | 413 |
GCF_000723845.1 | NZ_LK053004 | NZ_LK053004.1 | Haloferax prahovense strain Arc-Hr; whole genome shotgun sequence. | 707 | 803 | 1027 | 1366 | 0 | 3903 | 0.18 | 0.21 | 0.26 | 0.35 | 0 | 0.61 | 0.9047 | 0.2052 | 0.8161 | 1.9527 | 2 | 2 | 4 | 379 | 313 | 501 | 637 | 0 | 1830 | 0.23 | 0.17 | 0.28 | 0.32 | 0 | 0.59 | 0.8812 | 0.3104 | 0.7415 | 1.9423 | 0 | 2 | 2 | 4 | 379 | 313 | 501 | 637 | 0 | 1830 | 0.23 | 0.17 | 0.28 | 0.32 | 0 | 0.59 | 0.8812 | 0.3104 | 0.7415 | 1.9423 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 14 | 11 | 5 | 5 | 9 | 38 | 5 | 4 | 8 | 18 | 0 | 19 | 5 | 12 | 5 | 10 | 6 | 16 | 19 | 0 | 10 | 8 | 26 | 8 | 11 | 8 | 5 | 7 | 2 | 15 | 12 | 4 | 14 | 2 | 7 | 42 | 16 | 3 | 7 | 12 | 6 | 5 | 4 | 15 | 5 | 10 | 16 | 2 | 0 | 1 | 11 | 33 | 1 | 6 | 5 | 4 | 1 | 19 | 14 | 7 | 6 | 1 | 2 | 8 |