GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_000172995.2	NC_014729	NC_014729.1	Halogeometricum borinquense DSM 11551; complete sequence.	548991	549226	863125	859202	2820544	0.19	0.19	0.31	0.3	0.61	0.9386	0.0025	0.9975	1.9644	1471	1450	2921	505824	437095	767308	767700	2477927	0.21	0.18	0.31	0.31	0.62	0.8874	0.189	0.8373	1.9475	1529	1423	1407	2830	497832	429909	756601	756320	2440662	0.21	0.18	0.31	0.31	0.62	0.8874	0.1895	0.8369	1.9473	1496	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2	2	152	127	263	300	842	0.18	0.15	0.32	0.36	0	0.67	0.8899	0.1533	0.858	1.9072	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	27	25	52	708	790	1164	1274	3936	0.18	0.2	0.3	0.32	0	0.62	0.8815	0.1558	0.8621	1.9466	3	3	6	2338	1626	2324	2734	9022	0.26	0.18	0.28	0.29	0	0.56	0.9079	0.28	0.758	1.9729	14531	10437	4875	4884	13197	38406	8757	6329	9860	8943	3178	30450	3700	26708	4883	17901	3576	16986	24427	3557	15357	14657	39220	14346	14333	16094	1853	5495	3246	11810	24703	6598	41003	2167	5521	53098	13994	11600	18495	29858	8042	21101	7592	28145	2888	10888	11935	1931	2713	2376	18366	33312	2011	2207	824	3587	544	11561	18946	7607	6221	851	1435	9438
GCF_000172995.2	NC_014735	NC_014735.1	Halogeometricum borinquense DSM 11551 plasmid pHBOR01; complete sequence.	78427	80570	101440	101757	362194	0.22	0.22	0.28	0.28	0.56	0.9468	0.015	0.9851	1.9892	157	145	302	68934	59374	86391	88634	303333	0.23	0.2	0.28	0.29	0.57	0.8987	0.1865	0.8392	1.9687	239	153	139	292	66635	57167	83830	85882	293514	0.23	0.2	0.28	0.29	0.57	0.8987	0.1854	0.84	1.9688	231	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1649	1093	773	961	2037	4032	1193	1210	1056	1050	720	3684	777	3300	923	2377	591	1821	2711	668	1738	1949	4218	2392	1885	2014	435	754	699	1877	3242	1074	4258	513	1123	4755	1387	1018	2057	2519	1254	1476	1185	2421	276	1705	1619	351	356	424	2125	3360	462	322	141	793	61	1379	2089	875	1090	97	134	1310
GCF_000172995.2	NC_014731	NC_014731.1	Halogeometricum borinquense DSM 11551 plasmid pHBOR02; complete sequence.	72387	72514	97313	96796	339010	0.21	0.21	0.29	0.29	0.57	0.9434	0.0035	0.9965	1.9847	142	136	278	58455	49828	77217	78782	264282	0.22	0.19	0.29	0.3	0.59	0.895	0.187	0.8389	1.963	244	140	135	275	58190	49489	76805	78370	262854	0.22	0.19	0.29	0.3	0.59	0.8949	0.1869	0.839	1.9629	233	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1451	1083	640	775	1711	3913	1162	862	941	1087	561	3301	590	2605	720	1961	511	1638	2567	533	1545	1697	3894	2156	1648	1778	376	595	542	1609	2664	923	3865	376	926	5061	1446	1035	1933	2507	1096	1392	964	2363	328	1361	1367	270	330	415	1718	3056	282	345	168	654	53	1306	1941	792	889	76	146	1118
GCF_000172995.2	NC_014736	NC_014736.1	Halogeometricum borinquense DSM 11551 plasmid pHBOR03; complete sequence.	47228	44367	59345	59410	210350	0.22	0.21	0.28	0.28	0.56	0.9433	0.0318	0.9692	1.9876	99	81	180	36639	31778	47243	47429	163089	0.23	0.2	0.29	0.29	0.58	0.8982	0.2103	0.8207	1.9679	105	97	78	175	35668	31081	46112	46238	159099	0.23	0.2	0.29	0.29	0.58	0.8984	0.2088	0.8217	1.968	105	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	908	680	410	543	1109	2126	774	592	601	670	405	1869	399	1522	480	1235	298	929	1548	384	1034	973	2205	1359	1155	1080	267	386	350	1013	1799	556	2211	199	584	2688	855	668	1158	1418	645	771	620	1378	175	929	896	179	227	269	1163	1568	167	222	80	454	28	779	1143	495	586	59	88	672
GCF_000172995.2	NC_014732	NC_014732.1	Halogeometricum borinquense DSM 11551 plasmid pHBOR04; complete sequence.	39774	40445	57308	57307	194834	0.2	0.21	0.29	0.29	0.59	0.9329	0.0084	0.9917	1.9774	95	80	175	34952	30108	49259	49598	163917	0.22	0.19	0.29	0.3	0.59	0.8926	0.1859	0.8399	1.959	135	95	79	174	34690	29891	48929	49216	162726	0.22	0.19	0.29	0.3	0.59	0.8925	0.186	0.8398	1.9589	134	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	888	544	410	403	991	2302	663	456	582	619	281	2033	338	1783	428	1265	238	1018	1521	317	954	1000	2554	1082	967	1075	172	407	294	1036	1648	519	2639	209	574	3196	893	684	1272	1536	656	1145	511	1565	195	848	794	168	201	224	1238	2107	147	132	65	313	31	830	1321	555	492	42	101	770
GCF_000172995.2	NC_014737	NC_014737.1	Halogeometricum borinquense DSM 11551 plasmid pHBOR05; complete sequence.	3210	2989	5761	5575	17535	0.18	0.17	0.33	0.32	0.65	0.9128	0.0521	0.9494	1.9367	14	8	22	2985	1990	4763	4851	14589	0.21	0.14	0.33	0.33	0.66	0.8739	0.2538	0.7872	1.9124	41	14	8	22	2985	1990	4763	4851	14589	0.21	0.14	0.33	0.33	0.66	0.8739	0.2538	0.7872	1.9124	41	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	86	156	12	9	27	389	40	4	52	89	0	128	9	105	16	120	7	103	150	0	126	46	223	48	135	135	3	9	6	39	163	13	180	4	12	442	117	86	127	173	94	176	14	170	36	26	89	5	18	6	77	154	0	13	13	23	4	118	138	34	12	3	15	36