GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_900115785.1	NZ_FOYS01000008	NZ_FOYS01000008.1	Halogeometricum limi strain CGMCC 1.8711; whole genome shotgun sequence.	12123	13036	23839	24333	0	73331	0.17	0.18	0.33	0.33	0.66	0.9084	0.0465	0.9548	1.9274	30	45	75	12305	10081	22040	21678	66104	0.19	0.15	0.33	0.33	0.66	0.8711	0.2	0.8274	1.91	13	28	38	66	10340	8697	19515	18832	57384	0.18	0.15	0.33	0.33	0.67	0.8688	0.1957	0.8312	1.9072	13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	1	1	108	62	168	186	524	0.21	0.12	0.32	0.35	0	0.68	0.8778	0.3214	0.7386	1.8905	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	2	3	42	38	71	71	222	0.19	0.17	0.32	0.32	0	0.64	0.8866	0.2066	0.8163	1.9325	0	3	3	1148	823	1149	1386	4506	0.24	0.17	0.28	0.31	0	0.58	0.9022	0.2459	0.784	1.9662	368	200	33	25	108	956	56	81	245	251	19	558	24	747	99	448	44	442	657	30	414	184	1062	51	419	463	15	94	25	194	511	36	1284	64	27	1517	352	322	533	901	230	556	97	919	88	72	353	50	48	27	481	981	25	8	18	22	14	323	512	93	97	11	41	203
GCF_900115785.1	NZ_FOYS01000006	NZ_FOYS01000006.1	Halogeometricum limi strain CGMCC 1.8711; whole genome shotgun sequence.	41729	41470	77339	77872	0	238410	0.18	0.17	0.32	0.33	0.65	0.9121	0.0065	0.9935	1.9331	95	103	198	38121	31061	68079	67138	204399	0.19	0.15	0.33	0.33	0.66	0.8711	0.1962	0.8317	1.9139	101	95	102	197	37790	30807	67404	66529	202530	0.19	0.15	0.33	0.33	0.66	0.8711	0.1962	0.8317	1.914	101	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1046	778	176	164	517	3560	251	245	841	814	67	1912	78	2837	358	1757	182	1570	2237	139	1391	824	3580	197	1184	1673	70	401	121	931	1570	190	4592	329	136	5462	1199	1144	1850	2620	899	1773	344	2601	273	287	1192	267	186	75	1791	3614	80	54	80	118	40	1194	1849	374	290	20	137	979
GCF_900115785.1	NZ_FOYS01000003	NZ_FOYS01000003.1	Halogeometricum limi strain CGMCC 1.8711; whole genome shotgun sequence.	104478	108265	203378	199668	0	615789	0.17	0.18	0.33	0.32	0.65	0.9128	0.027	0.9734	1.9298	298	338	636	101449	84620	182038	178910	547017	0.18	0.16	0.33	0.33	0.66	0.8695	0.2127	0.8198	1.9059	374	290	331	621	100556	83757	180152	177188	541653	0.18	0.15	0.33	0.33	0.66	0.8693	0.2131	0.8195	1.9053	353	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	7	4	11	141	167	233	270	811	0.17	0.2	0.29	0.33	0	0.62	0.8709	0.1701	0.8541	1.9405	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2877	2384	457	457	1487	9638	856	887	2301	2144	367	5318	348	6702	830	3909	465	4188	5822	395	3744	2049	9757	1142	3345	3971	266	1119	405	2015	4277	694	11705	622	554	14349	3380	3056	4491	7927	1929	5415	1197	7741	751	966	3198	593	454	294	4370	9151	339	264	266	468	143	3068	4477	1092	942	91	387	2255
GCF_900115785.1	NZ_FOYS01000007	NZ_FOYS01000007.1	Halogeometricum limi strain CGMCC 1.8711; whole genome shotgun sequence.	33358	33404	65011	67284	0	199057	0.17	0.17	0.33	0.34	0.66	0.9073	0.0179	0.9824	1.9202	78	111	189	31224	26086	60238	57244	174792	0.18	0.15	0.34	0.33	0.67	0.866	0.2089	0.822	1.9026	27	77	107	184	30856	25770	59560	56650	172836	0.18	0.15	0.34	0.33	0.67	0.8657	0.2116	0.82	1.9014	27	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	3	3	43	43	72	75	233	0.18	0.19	0.31	0.32	0	0.63	0.8849	0.0822	0.9234	1.9463	1	0	1	49	42	60	54	205	0.24	0.2	0.29	0.26	0	0.56	0.8549	0.1296	0.8786	1.9879	995	743	76	75	364	3151	172	211	771	732	33	1651	52	2184	204	1266	140	1296	1907	86	1258	571	3362	101	965	1271	43	309	74	596	1444	125	3886	220	76	4898	1144	1134	1515	2752	544	1854	300	2678	249	223	936	177	150	49	1448	2959	80	44	47	74	52	923	1554	294	270	21	111	722
GCF_900115785.1	NZ_FOYS01000004	NZ_FOYS01000004.1	Halogeometricum limi strain CGMCC 1.8711; whole genome shotgun sequence.	73695	72526	137874	136393	0	420488	0.18	0.17	0.33	0.32	0.65	0.9222	0.0134	0.9867	1.932	226	211	437	69101	57781	123395	121960	372237	0.19	0.16	0.33	0.33	0.66	0.8694	0.2018	0.8282	1.9092	267	217	203	420	68340	56980	122010	120644	367974	0.19	0.16	0.33	0.33	0.66	0.869	0.2037	0.8267	1.9079	212	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	4	6	10	146	164	252	258	820	0.18	0.2	0.31	0.31	0	0.62	0.8833	0.1316	0.8818	1.9502	1	0	1	27	19	40	36	122	0.22	0.16	0.33	0.3	0	0.62	0.8617	0.2265	0.8019	1.9464	2168	1641	327	266	1044	6595	519	596	1539	1317	257	3716	219	4398	550	2671	337	2863	4049	281	2553	1442	6654	574	2099	2637	178	723	285	1383	2950	397	8214	519	297	9658	2333	2051	3064	5447	1292	3622	817	5342	480	639	2152	461	289	205	2999	6357	198	149	179	266	87	2116	2995	685	621	76	257	1563
GCF_900115785.1	NZ_FOYS01000002	NZ_FOYS01000002.1	Halogeometricum limi strain CGMCC 1.8711; whole genome shotgun sequence.	124877	123610	246933	246889	0	742309	0.17	0.17	0.33	0.33	0.67	0.9111	0.0052	0.9948	1.9197	394	382	776	119599	100867	227715	221999	670180	0.18	0.15	0.34	0.33	0.67	0.8678	0.2073	0.8243	1.9048	446	387	373	760	117880	99379	224448	218938	660645	0.18	0.15	0.34	0.33	0.67	0.8674	0.2083	0.8235	1.9041	434	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	0	1	55	44	101	111	311	0.18	0.14	0.32	0.36	0	0.68	0.8912	0.1583	0.855	1.8986	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	3	4	7	99	107	147	158	511	0.19	0.2	0.29	0.31	0	0.6	0.8717	0.1478	0.8669	1.9567	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	3885	2739	377	366	1491	11908	660	800	3028	2393	154	6107	219	8639	925	4983	472	5260	7439	328	4746	2335	12403	484	3838	5018	163	1193	330	2501	5644	517	15505	861	362	17976	3921	3979	5533	10453	2262	6546	1222	10257	854	812	3934	624	530	180	5754	12220	260	152	262	292	153	3402	5446	1048	945	112	495	2518
GCF_900115785.1	NZ_FOYS01000005	NZ_FOYS01000005.1	Halogeometricum limi strain CGMCC 1.8711; whole genome shotgun sequence.	67945	67293	126377	125689	0	387304	0.18	0.17	0.33	0.32	0.65	0.9174	0.0076	0.9925	1.9333	183	165	348	63073	52801	111905	113174	340953	0.19	0.16	0.33	0.33	0.66	0.872	0.1921	0.8352	1.9158	237	182	163	345	62716	52437	111205	112501	338859	0.19	0.16	0.33	0.33	0.66	0.8721	0.1918	0.8354	1.9158	237	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1848	1248	324	264	1013	5804	474	411	1258	1388	136	3325	194	4738	634	2506	260	2589	3846	217	2428	1430	6045	409	1895	2500	133	757	205	1669	2736	346	7621	570	310	8742	2159	1752	2845	4506	1426	2648	657	4526	469	594	2179	449	347	150	2915	6255	158	121	154	217	65	1950	3141	612	537	42	238	1568
GCF_900115785.1	NZ_FOYS01000001	NZ_FOYS01000001.1	Halogeometricum limi strain CGMCC 1.8711; whole genome shotgun sequence.	155417	161642	313229	309263	30	939581	0.17	0.17	0.33	0.33	0.66	0.9103	0.026	0.9744	1.9222	481	515	996	148322	126241	282890	273596	831049	0.18	0.16	0.34	0.33	0.66	0.8668	0.2148	0.8181	1.9034	484	469	504	973	147379	125212	280984	271719	825294	0.18	0.15	0.34	0.33	0.67	0.8664	0.2149	0.8181	1.9026	484	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	7	10	17	226	265	362	414	1267	0.18	0.21	0.29	0.33	0	0.61	0.8918	0.206	0.8189	1.9508	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	4505	3534	548	535	1941	14564	979	1121	3672	2868	300	7913	362	10420	1142	5716	704	6425	8872	494	5709	3132	15920	816	4863	6242	260	1526	471	3093	6790	788	19434	1011	559	22363	4871	5163	6533	13286	2790	8635	1723	12408	1160	1234	4653	831	678	269	6985	14683	388	238	301	403	216	4557	6536	1601	1166	145	611	3442