GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_900112175.1	NZ_FOYT01000006	NZ_FOYT01000006.1	Halogeometricum rufum strain CGMCC 1.7736; whole genome shotgun sequence.	40166	40131	82363	81987	244647	0.16	0.16	0.34	0.34	0.67	0.9094	0.0027	0.9973	1.9131	100	100	200	36171	31178	72471	71236	211056	0.17	0.15	0.34	0.34	0.68	0.8672	0.1871	0.8379	1.8953	102	97	99	196	35348	30447	70680	69409	205884	0.17	0.15	0.34	0.34	0.68	0.8675	0.1864	0.8383	1.8958	102	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1028	771	148	132	412	3660	236	199	918	810	75	1520	78	2850	301	1653	118	1759	2247	98	1825	607	3645	172	1237	1607	70	291	118	708	1533	127	4711	276	106	5429	1301	1180	1891	3180	899	2028	254	3124	317	280	1393	153	141	60	1849	3776	48	46	92	98	36	1554	1967	332	188	29	131	806
GCF_900112175.1	NZ_FOYT01000004	NZ_FOYT01000004.1	Halogeometricum rufum strain CGMCC 1.7736; whole genome shotgun sequence.	49739	51356	99531	98304	298930	0.17	0.17	0.33	0.33	0.66	0.9187	0.0222	0.9781	1.923	118	142	260	45872	37823	84645	86023	254363	0.18	0.15	0.33	0.34	0.67	0.8687	0.1963	0.8316	1.903	157	117	138	255	45224	37359	83534	84812	250929	0.18	0.15	0.33	0.34	0.67	0.8689	0.1957	0.8321	1.9031	156	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	0	1	15	13	24	32	84	0.18	0.15	0.29	0.38	0	0.67	0.8333	0.2143	0.8083	1.9072	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1324	955	206	210	619	4456	339	327	1041	995	119	2170	118	3352	398	1886	146	2210	2783	95	2166	921	4052	291	1622	2092	101	454	162	1021	1931	172	5229	401	177	6544	1618	1405	2164	3591	1160	1975	368	3757	439	334	1782	230	221	92	2254	4426	89	78	180	148	50	1801	2450	364	355	32	173	1022
GCF_900112175.1	NZ_FOYT01000007	NZ_FOYT01000007.1	Halogeometricum rufum strain CGMCC 1.7736; whole genome shotgun sequence.	15102	14784	31875	31331	93092	0.16	0.16	0.34	0.34	0.68	0.9123	0.0192	0.9809	1.9054	50	49	99	13659	11588	27673	27646	80566	0.18	0.15	0.34	0.34	0.68	0.8644	0.194	0.833	1.8903	41	46	48	94	13483	11466	27393	27353	79695	0.17	0.14	0.34	0.34	0.68	0.8639	0.1917	0.8349	1.888	41	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	0	1	95	57	166	181	499	0.19	0.11	0.33	0.36	0	0.7	0.8649	0.2932	0.7586	1.872	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	1	2	25	30	45	49	149	0.17	0.2	0.3	0.33	0	0.63	0.8926	0.1773	0.839	1.9434	2	2	56	35	69	63	223	0.25	0.16	0.31	0.28	0	0.59	0.8616	0.272	0.7738	1.9543	442	277	52	34	119	1572	81	84	294	367	27	642	19	985	105	538	36	679	910	33	709	216	1391	51	512	650	32	107	36	217	588	33	1720	102	34	2110	544	466	698	1395	366	831	82	1306	122	92	534	64	60	26	664	1504	16	10	35	26	22	617	741	96	74	10	62	298
GCF_900112175.1	NZ_FOYT01000003	NZ_FOYT01000003.1	Halogeometricum rufum strain CGMCC 1.7736; whole genome shotgun sequence.	62385	62287	121804	122837	369313	0.17	0.17	0.33	0.33	0.66	0.9208	0.005	0.995	1.9225	182	165	347	53685	48987	104846	105996	313514	0.17	0.16	0.33	0.34	0.67	0.8693	0.21	0.8217	1.9025	250	180	160	340	52638	47825	102950	104036	307449	0.17	0.16	0.33	0.34	0.67	0.869	0.2098	0.8218	1.902	205	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1828	1181	249	243	738	5424	388	431	1152	1353	113	2471	143	3961	430	2043	170	2765	3635	141	3002	961	5584	369	1836	2355	121	556	188	1126	2461	254	7146	476	228	7446	1924	1660	2625	4709	1262	2442	397	4688	460	477	2198	230	227	104	2563	5690	70	89	197	181	60	2106	2908	422	337	28	251	1210
GCF_900112175.1	NZ_FOYT01000005	NZ_FOYT01000005.1	Halogeometricum rufum strain CGMCC 1.7736; whole genome shotgun sequence.	40689	40399	84640	87138	252866	0.16	0.16	0.33	0.34	0.68	0.9028	0.0181	0.9821	1.905	96	138	234	36779	31875	76178	74165	218997	0.17	0.15	0.34	0.34	0.68	0.8628	0.1985	0.8301	1.8879	96	95	134	229	36501	31617	75586	73577	217281	0.17	0.15	0.34	0.34	0.68	0.8625	0.2011	0.828	1.8874	95	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	3	3	39	42	74	78	233	0.17	0.18	0.32	0.33	0	0.65	0.8807	0.064	0.9411	1.9289	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1243	981	103	91	289	4293	166	241	944	938	47	1703	72	2638	219	1513	88	1901	2524	60	2067	559	4004	145	1349	1644	47	303	87	574	1771	82	4874	260	78	6032	1374	1392	1912	3934	742	2456	216	3763	337	189	1348	126	136	44	1785	3793	27	40	97	77	44	1403	1927	285	214	18	167	651
GCF_900112175.1	NZ_FOYT01000002	NZ_FOYT01000002.1	Halogeometricum rufum strain CGMCC 1.7736; whole genome shotgun sequence.	172442	166091	359480	363992	1062005	0.16	0.16	0.34	0.34	0.68	0.9142	0.025	0.9754	1.9029	610	525	1135	156228	132998	319469	315933	924628	0.17	0.15	0.34	0.34	0.68	0.8631	0.2048	0.8262	1.8859	559	594	506	1100	154485	131302	315916	312265	913968	0.17	0.15	0.34	0.34	0.68	0.8626	0.2061	0.8252	1.8846	546	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	8	13	21	289	331	485	528	1633	0.18	0.2	0.3	0.32	0	0.62	0.8737	0.1421	0.8757	1.9461	2	2	57	35	69	62	223	0.26	0.16	0.31	0.28	0	0.58	0.8649	0.2877	0.7618	1.9558	5032	4188	513	467	1537	17716	833	924	3964	3455	239	7240	278	11232	998	6469	429	8363	10167	292	8194	2352	16159	744	5542	6962	275	1300	372	2470	6829	520	20636	1100	452	25228	5714	5573	7483	16599	3388	10195	1051	15698	1446	903	5940	504	596	213	7557	16537	189	216	480	384	230	6424	7982	1180	922	123	747	2911
GCF_900112175.1	NZ_FOYT01000001	NZ_FOYT01000001.1	Halogeometricum rufum strain CGMCC 1.7736; whole genome shotgun sequence.	296556	302423	636649	630644	1866272	0.16	0.16	0.34	0.34	0.68	0.915	0.0145	0.9856	1.9054	934	1017	1951	281685	238903	569503	560252	1650343	0.17	0.15	0.34	0.34	0.68	0.8623	0.209	0.8231	1.8861	1109	913	995	1908	278274	236012	563327	554231	1631844	0.17	0.15	0.34	0.34	0.68	0.8619	0.2091	0.823	1.8853	1096	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	1	1	50	39	105	117	311	0.16	0.13	0.34	0.38	0	0.71	0.8792	0.1776	0.8387	1.8591	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	11	13	24	318	365	515	580	1778	0.18	0.2	0.29	0.33	0	0.62	0.886	0.1887	0.8339	1.9468	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	8872	7671	926	878	2902	31421	1595	1839	7424	5753	574	13209	673	20169	1894	11555	842	14663	17682	590	14754	4245	29105	1685	10088	12685	528	2201	749	4349	13049	958	37091	1961	832	44763	9462	10039	13312	29216	5998	18040	1975	28111	2480	1644	10247	1009	968	397	13603	29855	323	432	734	690	368	11039	13657	2028	1585	242	1298	5021