GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	fr_cds_N Frequency of 'N' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_017874235.1	NZ_JAGGLC010000001	NZ_JAGGLC010000001.1	Halolamina salifodinae strain DSM 26232 Ga0451177_01; whole genome shotgun sequence.	146029	145181	293013	294711	878934	0.17	0.17	0.33	0.34	0.67	0.9194	0.0058	0.9942	1.9163	461	467	928	138710	115495	262798	263867	780870	0.18	0.15	0.33	0.34	0.67	0.8716	0.1952	0.8328	1.8977	627	443	454	897	136883	113606	259323	260324	770136	0.18	0.15	0.33	0.34	0	0.67	0.8712	0.1965	0.8317	1.8964	592	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	9	10	19	256	286	417	460	1419	0.18	0.2	0.29	0.33	0	0.62	0.8653	0.1937	0.8362	1.9388	0	1	1	20	17	32	26	95	0.21	0.18	0.34	0.27	0	0.61	0.8747	0.1845	0.8313	1.9579	4420	3700	675	910	1817	18302	1349	763	3242	2819	454	5267	521	6519	764	5446	478	6888	7619	534	8601	1910	11608	2669	6103	7250	611	748	627	1327	8812	827	13812	289	673	18438	4524	4815	6021	13651	3912	7734	1275	13972	827	1210	5237	269	863	458	5232	12198	173	379	256	768	290	5410	6161	1220	699	168	439	1759
GCF_017874235.1	NZ_JAGGLC010000002	NZ_JAGGLC010000002.1	Halolamina salifodinae strain DSM 26232 Ga0451177_02; whole genome shotgun sequence.	84475	85520	159856	160673	490524	0.17	0.17	0.33	0.33	0.65	0.9204	0.0087	0.9913	1.9309	236	213	449	77941	67360	140482	142802	428585	0.18	0.16	0.32	0.33	0.66	0.8769	0.194	0.8342	1.908	335	229	203	432	76113	65886	137222	139624	418845	0.18	0.16	0.32	0.33	0	0.66	0.877	0.1952	0.8333	1.9079	327	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2	2	4	51	53	93	96	293	0.18	0.18	0.32	0.33	0	0.65	0.8634	0.1963	0.8336	1.9194	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2399	1746	437	626	1193	9228	917	564	1699	1780	344	3196	347	3851	527	3013	331	3795	4501	346	4584	1229	6368	1774	3110	3690	398	458	459	867	5018	535	7133	202	559	9331	2396	2412	3482	6561	2124	3517	761	7175	383	895	3177	166	465	304	2943	6340	142	278	167	488	122	2866	3342	749	468	61	249	1027
GCF_017874235.1	NZ_JAGGLC010000003	NZ_JAGGLC010000003.1	Halolamina salifodinae strain DSM 26232 Ga0451177_03; whole genome shotgun sequence.	78742	77313	151755	153626	461436	0.17	0.17	0.33	0.33	0.66	0.9251	0.0153	0.9848	1.923	248	236	484	73677	64269	138059	139214	415219	0.18	0.16	0.33	0.33	0.66	0.8752	0.1939	0.8344	1.9026	361	245	227	472	72128	62735	135234	136481	406578	0.18	0.16	0.33	0.33	0	0.66	0.8752	0.1958	0.8329	1.9023	349	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	1	49	40	105	118	312	0.16	0.13	0.34	0.38	0	0.71	0.8722	0.1594	0.8531	1.8587	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	2	2	28	28	42	47	145	0.19	0.19	0.29	0.32	0	0.61	0.887	0.1284	0.8796	1.9574	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2369	1728	455	662	1141	8786	907	435	1634	1692	287	2857	301	3652	546	2809	314	3607	4238	306	4610	1273	6163	1672	2934	3733	370	440	413	871	4529	486	7183	175	486	8962	2375	2425	3198	6939	2036	3561	748	7465	384	770	2792	155	451	247	2839	6617	117	262	181	504	137	2596	3285	652	410	90	245	1019
GCF_017874235.1	NZ_JAGGLC010000004	NZ_JAGGLC010000004.1	Halolamina salifodinae strain DSM 26232 Ga0451177_04; whole genome shotgun sequence.	49980	49176	101048	101032	301236	0.17	0.16	0.34	0.34	0.67	0.9211	0.0082	0.9919	1.9141	177	150	327	47323	38789	89812	90364	266288	0.18	0.15	0.33	0.34	0.67	0.8714	0.2047	0.8263	1.8983	210	173	144	317	46868	38355	89056	89589	263868	0.18	0.15	0.33	0.34	0	0.67	0.8713	0.2078	0.8239	1.8966	210	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	4	3	7	108	107	174	178	567	0.19	0.19	0.31	0.31	0	0.62	0.8731	0.1067	0.901	1.9527	0	1	1	20	17	32	26	95	0.21	0.18	0.34	0.27	0	0.61	0.8747	0.1845	0.8313	1.9579	1603	1247	215	331	657	6399	463	225	1038	935	120	1796	164	2330	268	1877	118	2455	2654	143	2918	648	3910	784	1964	2561	196	248	186	449	3064	240	4836	89	282	6250	1594	1635	2006	4796	1345	2781	456	4854	271	400	1826	75	269	149	1736	4166	61	130	71	254	91	1774	2051	478	231	56	170	567
GCF_017874235.1	NZ_JAGGLC010000005	NZ_JAGGLC010000005.1	Halolamina salifodinae strain DSM 26232 Ga0451177_05; whole genome shotgun sequence.	48099	47390	97606	97657	290752	0.17	0.16	0.34	0.34	0.67	0.9193	0.0077	0.9924	1.9133	157	162	319	43923	38986	86691	87187	256787	0.17	0.15	0.33	0.34	0.67	0.8692	0.2028	0.8279	1.8922	174	154	160	314	43735	38770	86251	86736	255492	0.17	0.15	0.34	0.34	0	0.68	0.8695	0.2013	0.829	1.8922	168	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	1	2	24	33	44	54	155	0.15	0.21	0.28	0.35	0	0.63	0.8622	0.2839	0.7677	1.9247	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1352	1019	238	285	634	5722	482	257	991	939	157	1765	177	2127	246	1669	149	2427	2652	203	3041	633	4066	838	1751	2309	202	287	220	464	2920	293	4800	114	262	5896	1502	1474	1931	4730	1243	2562	451	4649	303	445	1790	74	313	150	1724	4335	60	117	78	281	99	1902	1987	362	224	41	174	576
GCF_017874235.1	NZ_JAGGLC010000006	NZ_JAGGLC010000006.1	Halolamina salifodinae strain DSM 26232 Ga0451177_06; whole genome shotgun sequence.	32747	32854	67444	66638	199683	0.16	0.16	0.34	0.33	0.67	0.9214	0.0076	0.9924	1.9134	115	100	215	29636	25247	57663	57692	170238	0.17	0.15	0.34	0.34	0.68	0.8704	0.1956	0.8319	1.8946	72	105	97	202	28856	24549	56463	56455	166323	0.17	0.15	0.34	0.34	0	0.68	0.8702	0.1954	0.8322	1.8925	72	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	1	82	36	124	147	389	0.21	0.09	0.32	0.38	0	0.7	0.8572	0.4747	0.6413	1.8476	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	6	2	8	101	124	181	198	604	0.17	0.21	0.3	0.32	0	0.62	0.871	0.2532	0.7948	1.9313	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	919	685	154	225	427	3736	339	167	692	646	79	1096	91	1541	198	1122	76	1549	1643	100	1917	489	2474	546	1251	1668	122	145	133	274	1830	162	3133	31	159	3878	1059	1057	1280	3025	878	1612	275	3152	180	281	1125	56	189	103	1085	2733	31	59	47	142	72	1097	1330	252	139	40	90	355
GCF_017874235.1	NZ_JAGGLC010000007	NZ_JAGGLC010000007.1	Halolamina salifodinae strain DSM 26232 Ga0451177_07; whole genome shotgun sequence.	20572	19782	42595	42665	125614	0.16	0.16	0.34	0.34	0.68	0.9139	0.0204	0.98	1.9057	63	63	126	19551	15465	37633	37807	110456	0.18	0.14	0.33	0.34	0.68	0.8698	0.1961	0.8322	1.8942	51	60	60	120	19057	15061	36727	36870	107715	0.18	0.14	0.34	0.34	0	0.68	0.8697	0.197	0.8315	1.8925	47	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	1	2	25	31	37	52	145	0.17	0.21	0.25	0.36	0	0.61	0.8648	0.279	0.7626	1.9429	1	0	1	54	54	63	76	247	0.22	0.22	0.26	0.31	0	0.56	0.8617	0.0935	0.9145	1.9851	593	480	70	107	213	2881	157	72	485	372	35	764	39	827	94	718	43	946	1095	55	1191	231	1601	346	846	1062	75	86	79	136	1177	65	1894	17	69	2897	648	722	885	2016	536	1143	192	2078	128	131	687	25	119	49	700	1683	14	42	29	93	41	770	862	134	74	22	57	207
GCF_017874235.1	NZ_JAGGLC010000008	NZ_JAGGLC010000008.1	Halolamina salifodinae strain DSM 26232 Ga0451177_08; whole genome shotgun sequence.	488	630	788	653	2559	0.19	0.25	0.31	0.26	0.56	0.9241	0.2207	0.8016	1.9798	0	2	2	605	459	617	752	2433	0.24	0.18	0.27	0.31	0.58	0.8974	0.1984	0.8237	1.9725	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	2	2	605	459	617	752	2433	0.24	0.18	0.27	0.31	0	0.58	0.8974	0.1984	0.8237	1.9725	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GCF_017874235.1	NZ_JAGGLC010000009	NZ_JAGGLC010000009.1	Halolamina salifodinae strain DSM 26232 Ga0451177_09; whole genome shotgun sequence.	281	367	519	416	1583	0.18	0.23	0.33	0.26	0.59	0.9257	0.2429	0.7836	1.9658	0	2	2	320	255	360	458	1393	0.21	0.2	0.26	0.33	0.59	0.9135	0.2321	0.7921	1.9655	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	1	1	13	16	19	24	72	0.18	0.22	0.26	0.33	0	0.6	0.9044	0.2197	0.8021	1.9636	0	1	1	307	239	341	434	1321	0.23	0.18	0.26	0.33	0	0.59	0.9226	0.2445	0.7821	1.9675	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0