Assembly Assembly | Locus_ID Locus_ID | Version Version | Definition Sequence description | bp_chromo_A Total number of 'A' nucleotides in the whole sequence | bp_chromo_T Total number of 'T' nucleotides in the whole sequence | bp_chromo_C Total number of 'C' nucleotides in the whole sequence | bp_chromo_G Total number of 'G' nucleotides in the whole sequence | bp_chromo_N Total number of 'N' nucleotides in the whole sequence | bp_chromo_tot Total number of nucleotides in the whole sequence | fr_chromo_A Frequency of 'A' nucleotides in the whole sequence | fr_chromo_T Frequency of 'T' nucleotides in the whole sequence | fr_chromo_C Frequency of 'C' nucleotides in the whole sequence | fr_chromo_G Frequency of 'G' nucleotides in the whole sequence | fr_chromo_N Frequency of 'N' nucleotides in the whole sequence | GC_chromo Percentage of āGā + āCā nucleotides in the whole sequence | topo_entropy_chromo Topological entropy of the whole sequence | chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence | chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee | shannon_chromo Shannon entropy of the whole sequence | n_gene_pos Number of genes in the positive strand | n_gene_neg Number of genes in the negative strand | n_gene_tot Total number of genes in the chromosome | bp_gene_A Number of 'A' bases in total genes | bp_gene_T Number of 'T' bases in total genes | bp_gene_C Number of 'C' bases in total genes | bp_gene_G Number of 'G' bases in total genes | bp_gene_N Number of 'N' bases in total genes | bp_gene_tot Total number of bases in total genes | fr_gene_A Frequency of 'A' bases among total gene bases | fr_gene_T Frequency of 'T' bases among total gene bases | fr_gene_C Frequency of 'C' bases among total gene bases | fr_gene_G Frequency of 'G' bases among total gene bases | fr_gene_N Frequency of 'N' bases among total gene bases | GC_gene Percentage of 'G' and 'C' bases in total genes | topo_entropy_gene Topological entropy calculated from total gene sequences | chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes | chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes | shannon_gene Shannon entropy score for total genes | bp_gene_overlap_tot Number of bases overlapping between genes on two strands | n_cds_pos Number of CDS in the positive strand | n_cds_neg Number of CDS in the negative strand | n_cds_tot Total number of CDS in the chromosome | bp_cds_A Number of 'A' bases in total CDS (coding sequences) | bp_cds_T Number of 'T' bases in total CDS | bp_cds_C Number of 'C' bases in total CDS | bp_cds_G Number of 'G' bases in total CDS | bp_cds_N Number of 'N' bases in total CDS | bp_cds_tot Total bases in total CDS | fr_cds_A Frequency of 'A' bases among total CDS bases | fr_cds_T Frequency of 'T' bases among total CDS bases | fr_cds_C Frequency of 'C' bases among total CDS bases | fr_cds_G Frequency of 'G' bases among total CDS bases | fr_cds_N Frequency of 'N' bases among total CDS bases | GC_cds Percentage of 'G' and 'C' bases in total CDS | topo_entropy_cds Topological entropy calculated from total CDS sequences | chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS | chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS | shannon_cds Shannon entropy score for total CDS | bp_cds_overlap_tot Number of bases overlapping between CDS on two strands | bp_cds_intron_A Number of 'A' bases in total introns between CDS | bp_cds_intron_T Number of 'T' bases in total introns between CDS | bp_cds_intron_C Number of 'C' bases in total introns between CDS | bp_cds_intron_G Number of 'G' bases in total introns between CDS | bp_cds_intron_N Number of 'N' bases in total introns between CDS | bp_cds_intron_tot Total bases in total introns between CDS | fr_cds_intron_A Frequency of 'A' bases in total introns between CDS | fr_cds_intron_T Frequency of 'T' bases in total introns between CDS | fr_cds_intron_C Frequency of 'C' bases in total introns between CDS | fr_cds_intron_G Frequency of 'G' bases in total introns between CDS | fr_cds_intron_N Frequency of 'N' bases in total introns between CDS | GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS | topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS | chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS | chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS | shannon_cds_intron Shannon entropy score for total introns between CDS | bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands | n_ncRNA_pos Number of ncRNA in the positive strand | n_ncRNA_neg Number of ncRNA in the negative strand | n_ncRNA_tot Total number of ncRNA in the chromosome | bp_ncRNA_A Number of 'A' bases in total ncRNA | bp_ncRNA_T bp_ncRNA_T | bp_ncRNA_C Number of 'C' bases in total ncRNA | bp_ncRNA_G Number of 'G' bases in total ncRNA | bp_ncRNA_N Number of 'N' bases in total ncRNA | bp_ncRNA_tot Total bases in total ncRNA | fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases | fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases | fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases | fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases | fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases | GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA | topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences | chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA | chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA | shannon_ncRNA Shannon entropy score for total ncRNA | bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands | bp_nc_intron_A Number of 'A' bases in total introns between ncRNA | bp_nc_intron_T Number of 'T' bases in total introns between ncRNA | bp_nc_intron_C Number of 'C' bases in total introns between ncRNA | bp_nc_intron_G Number of 'G' bases in total introns between ncRNA | bp_nc_intron_N Number of 'N' bases in total introns between ncRNA | bp_nc_intron_tot Total bases in total introns between ncRNA | fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA | fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA | fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA | fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA | fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA | GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA | topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA | chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA | chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA | shannon_nc_intron Shannon entropy score for total introns between ncRNA | bp_nc_intron_overlap_tot Number of bases overlapping between introns between ncRNA on two strands | n_tRNA_pos Number of tRNA in the positive strand | n_tRNA_neg Number of tRNA in the negative strand | n_tRNA_tot Total number of tRNA in the chromosome | bp_tRNA_A Number of 'A' bases in total tRNA | bp_tRNA_T Number of 'T' bases in total tRNA | bp_tRNA_C Number of 'C' bases in total tRNA | bp_tRNA_G Number of 'G' bases in total tRNA | bp_tRNA_N Number of 'N' bases in total tRNA | bp_tRNA_tot Total bases in total tRNA | fr_tRNA_A Frequency of 'A' bases among total tRNA bases | fr_tRNA_T Frequency of 'T' bases among total tRNA bases | fr_tRNA_C Frequency of 'C' bases among total tRNA bases | fr_tRNA_G Frequency of 'G' bases among total tRNA bases | fr_tRNA_N Frequency of 'N' bases among total tRNA bases | GC_tRNA Percentage of 'G' and 'C' bases in total tRNA | topo_entropy_tRNA Topological entropy calculated from total tRNA sequences | chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA | chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA | shannon_tRNA Shannon entropy score for total tRNA | bp_tRNA_overlap_tot Number of bases overlapping between tRNA on two strands | n_rRNA_pos Number of rRNA in the positive strand | n_rRNA_neg Number of rRNA in the negative strand | n_rRNA_tot Total number of rRNA in the chromosome | bp_rRNA_A Number of 'A' bases in total rRNA | bp_rRNA_T Number of 'T' bases in total rRNA | bp_rRNA_C Number of 'C' bases in total rRNA | bp_rRNA_G Number of 'G' bases in total rRNA | bp_rRNA_N Number of 'N' bases in total rRNA | bp_rRNA_tot Total bases in total rRNA | fr_rRNA_A Frequency of 'A' bases among total rRNA bases | fr_rRNA_T Frequency of 'T' bases among total rRNA bases | fr_rRNA_C Frequency of 'C' bases among total rRNA bases | fr_rRNA_G Frequency of 'G' bases among total rRNA bases | fr_rRNA_N Frequency of 'N' bases among total rRNA bases | GC_rRNA Percentage of 'G' and 'C' bases in total rRNA | topo_entropy_rRNA Topological entropy calculated from total rRNA sequences | chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA | chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA | shannon_rRNA Shannon entropy score for total rRNA | bp_rRNA_overlap_tot Number of bases overlapping between rRNA on two strands | ATG ATG | AAG AAG | GTA GTA | ACT ACT | GCA GCA | GAG GAG | GCT GCT | ATT ATT | TCC TCC | TGG TGG | AAT AAT | GAA GAA | TCA TCA | ACG ACG | AGT AGT | AAC AAC | TCT TCT | GTG GTG | TTC TTC | TTT TTT | CTG CTG | GGT GGT | CTC CTC | GAT GAT | CAG CAG | ACC ACC | CTA CTA | TTG TTG | TAT TAT | GGA GGA | ATC ATC | CTT CTT | GTC GTC | ATA ATA | ACA ACA | GAC GAC | CAC CAC | CCC CCC | TAC TAC | GCC GCC | AGC AGC | CGC CGC | AAA AAA | GGC GGC | TGC TGC | GTT GTT | GGG GGG | AGA AGA | TGT TGT | CAT CAT | TCG TCG | GCG GCG | TTA TTA | CCT CCT | AGG AGG | CCA CCA | TAG TAG | CGG CGG | CCG CCG | CGT CGT | CAA CAA | TAA TAA | TGA TGA | CGA CGA |
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GCF_002025255.2 | NZ_CP054587 | NZ_CP054587.1 | Halolamina sp. CBA1230 chromosome; complete genome. | 468494 | 468980 | 983923 | 983178 | 0 | 2904575 | 0.16 | 0.16 | 0.34 | 0.34 | 0 | 0.68 | 0.9194 | 0.0009 | 0.9991 | 1.9074 | 1539 | 1504 | 3043 | 436708 | 372040 | 858035 | 890420 | 0 | 2557203 | 0.17 | 0.15 | 0.33 | 0.35 | 0 | 0.68 | 0.8664 | 0.207 | 0.824 | 1.8879 | 1890 | 1493 | 1464 | 2957 | 429334 | 365326 | 845287 | 876684 | 0 | 2516631 | 0.17 | 0.15 | 0.33 | 0.35 | 0 | 0.68 | 0.8661 | 0.2077 | 0.8236 | 1.8869 | 1863 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | NA | 0 | 0 | 2 | 2 | 118 | 70 | 245 | 273 | 0 | 706 | 0.16 | 0.1 | 0.35 | 0.39 | 0 | 0.74 | 0.8554 | 0.2883 | 0.7663 | 1.8164 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 21 | 25 | 46 | 623 | 689 | 1027 | 1132 | 0 | 3471 | 0.18 | 0.2 | 0.3 | 0.33 | 0 | 0.62 | 0.8669 | 0.1958 | 0.8338 | 1.9389 | 0 | 3 | 3 | 6 | 2187 | 1607 | 2343 | 2875 | 0 | 9012 | 0.23 | 0.18 | 0.28 | 0.32 | 0 | 0.6 | 0.9108 | 0.203 | 0.8188 | 1.9623 | 0 | 13829 | 10444 | 1661 | 2298 | 4967 | 61441 | 3672 | 1225 | 9790 | 9693 | 921 | 14403 | 1318 | 24435 | 2272 | 17493 | 911 | 25402 | 26433 | 1025 | 30223 | 5887 | 39410 | 7829 | 18376 | 22898 | 1193 | 2094 | 1160 | 3870 | 28747 | 1966 | 46474 | 714 | 2087 | 61874 | 15131 | 15884 | 20715 | 39975 | 12813 | 24268 | 3777 | 42386 | 2637 | 3413 | 21870 | 682 | 2890 | 1128 | 17414 | 47205 | 460 | 1032 | 928 | 1923 | 904 | 19117 | 21062 | 3931 | 1790 | 433 | 1620 | 5054 |
GCF_002025255.2 | NZ_CP054588 | NZ_CP054588.1 | Halolamina sp. CBA1230 plasmid pCBA1230-01; complete sequence. | 43550 | 43219 | 83913 | 83806 | 0 | 254488 | 0.17 | 0.17 | 0.33 | 0.33 | 0 | 0.66 | 0.9193 | 0.0045 | 0.9956 | 1.9257 | 129 | 109 | 238 | 37747 | 32594 | 70787 | 72799 | 0 | 213927 | 0.18 | 0.16 | 0.33 | 0.34 | 0 | 0.66 | 0.8723 | 0.1916 | 0.8357 | 1.8997 | 193 | 127 | 107 | 234 | 37299 | 32177 | 70140 | 72085 | 0 | 211701 | 0.18 | 0.16 | 0.33 | 0.34 | 0 | 0.66 | 0.872 | 0.1922 | 0.8352 | 1.899 | 161 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 1043 | 772 | 180 | 283 | 584 | 4361 | 391 | 183 | 734 | 820 | 148 | 1360 | 192 | 2203 | 276 | 1520 | 126 | 1936 | 2017 | 148 | 2186 | 527 | 3472 | 861 | 1436 | 1765 | 115 | 257 | 190 | 446 | 2280 | 284 | 3938 | 80 | 284 | 5022 | 1317 | 1186 | 1858 | 3131 | 1063 | 1763 | 375 | 3131 | 273 | 397 | 1945 | 101 | 305 | 163 | 1570 | 3857 | 53 | 123 | 107 | 239 | 60 | 1901 | 1764 | 425 | 287 | 37 | 138 | 577 |
GCF_002025255.2 | NZ_CP054589 | NZ_CP054589.1 | Halolamina sp. CBA1230 plasmid pCBA1230-02; complete sequence. | 54347 | 51371 | 73710 | 73935 | 0 | 253363 | 0.21 | 0.2 | 0.29 | 0.29 | 0 | 0.58 | 0.9443 | 0.0297 | 0.9711 | 1.9799 | 156 | 78 | 234 | 44707 | 36087 | 58112 | 58134 | 0 | 197040 | 0.23 | 0.18 | 0.3 | 0.3 | 0 | 0.59 | 0.8953 | 0.1937 | 0.8322 | 1.9586 | 258 | 154 | 77 | 231 | 43942 | 35354 | 57219 | 57240 | 0 | 193755 | 0.23 | 0.18 | 0.3 | 0.3 | 0 | 0.59 | 0.895 | 0.1945 | 0.8316 | 1.9584 | 244 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 1008 | 1074 | 381 | 511 | 985 | 3658 | 774 | 693 | 691 | 876 | 596 | 2192 | 471 | 1723 | 562 | 1419 | 311 | 1013 | 1704 | 365 | 1255 | 786 | 2822 | 1675 | 1634 | 1317 | 272 | 414 | 544 | 680 | 2156 | 620 | 2616 | 230 | 646 | 3868 | 1137 | 754 | 1608 | 1934 | 782 | 1318 | 677 | 1678 | 257 | 763 | 1073 | 149 | 308 | 347 | 1084 | 2051 | 179 | 316 | 137 | 600 | 60 | 1301 | 1255 | 649 | 623 | 62 | 109 | 832 |
GCF_002025255.2 | NZ_CP054590 | NZ_CP054590.1 | Halolamina sp. CBA1230 plasmid pCBA1230-03; complete sequence. | 11448 | 10809 | 15036 | 15613 | 0 | 52906 | 0.22 | 0.2 | 0.28 | 0.3 | 0 | 0.58 | 0.9325 | 0.0475 | 0.9536 | 1.9814 | 23 | 19 | 42 | 7931 | 6339 | 10180 | 10716 | 0 | 35166 | 0.23 | 0.18 | 0.29 | 0.3 | 0 | 0.59 | 0.8935 | 0.2321 | 0.8057 | 1.952 | 59 | 22 | 19 | 41 | 7626 | 6070 | 9895 | 10447 | 0 | 34038 | 0.23 | 0.18 | 0.29 | 0.3 | 0 | 0.59 | 0.8926 | 0.2355 | 0.8031 | 1.9509 | 59 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 136 | 169 | 59 | 105 | 167 | 617 | 163 | 92 | 124 | 135 | 89 | 370 | 71 | 420 | 107 | 310 | 60 | 283 | 291 | 54 | 221 | 175 | 433 | 339 | 294 | 223 | 29 | 95 | 73 | 96 | 309 | 111 | 380 | 16 | 104 | 717 | 189 | 109 | 288 | 309 | 139 | 219 | 129 | 291 | 60 | 141 | 211 | 14 | 52 | 66 | 241 | 391 | 21 | 45 | 24 | 101 | 13 | 238 | 226 | 121 | 118 | 11 | 17 | 125 |