GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_024228315.1	NZ_CP100454	NZ_CP100454.1	Halomarina sp. BND7 chromosome; complete genome.	568329	567286	1200652	1205097	3541364	0.16	0.16	0.34	0.34	0.68	0.931	0.0028	0.9972	1.9051	1937	1756	3693	492228	443524	1036289	1044800	3016841	0.17	0.15	0.34	0.35	0.68	0.864	0.1901	0.8376	1.8817	2615	1891	1715	3606	485462	437066	1023670	1031971	2978169	0.17	0.15	0.34	0.35	0.68	0.8636	0.1903	0.8375	1.8806	2521	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	1	2	121	68	241	259	689	0.17	0.1	0.35	0.38	0	0.73	0.8655	0.3065	0.7666	1.827	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	25	21	46	639	696	1015	1127	3477	0.18	0.2	0.29	0.32	0	0.62	0.8724	0.1688	0.8513	1.948	3	3	1078	792	1180	1476	4526	0.24	0.17	0.27	0.32	0	0.6	0.9044	0.2632	0.775	1.9584	16153	13878	2587	1899	4641	65779	3283	2064	10442	11217	1472	15456	1426	31179	2371	19165	1272	24695	31365	1859	25485	8049	59335	8583	18067	24999	1318	2722	1988	8254	31662	2362	63770	1179	1810	68758	18262	18952	24934	45784	13769	36386	2297	45672	5183	3634	26994	1156	2253	1103	19905	62333	720	1144	2292	1894	879	24356	26055	3928	2015	449	2278	7552
GCF_024228315.1	NZ_CP100455	NZ_CP100455.1	Halomarina sp. BND7 plasmid unnamed1; complete sequence.	98005	100068	210186	209069	617328	0.16	0.16	0.34	0.34	0.68	0.9162	0.0131	0.987	1.9053	293	272	565	87020	78244	180180	182640	528084	0.17	0.15	0.34	0.35	0.69	0.8655	0.1815	0.8438	1.884	318	288	263	551	85514	76514	176826	179384	518238	0.17	0.15	0.34	0.35	0.69	0.8654	0.1809	0.8442	1.8835	290	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	3098	2650	430	221	667	10561	459	223	1761	2232	202	2709	203	5960	379	3613	174	4039	5729	297	4544	1511	10021	1321	3104	4197	248	492	308	1492	5807	319	11376	286	202	11894	3516	3136	4770	7571	2377	5109	448	7616	865	517	4946	224	427	134	3862	10641	124	141	519	217	128	4778	5261	536	304	42	381	1427
GCF_024228315.1	NZ_CP100456	NZ_CP100456.1	Halomarina sp. BND7 plasmid unnamed2; complete sequence.	19344	19693	32795	32469	104301	0.19	0.19	0.31	0.31	0.63	0.9303	0.0139	0.9862	1.9539	49	39	88	16995	14455	27720	27860	87030	0.2	0.17	0.32	0.32	0.64	0.886	0.1917	0.8329	1.932	34	49	38	87	16732	14250	27353	27498	85833	0.2	0.17	0.32	0.32	0.64	0.8857	0.1924	0.8323	1.9316	34	NA	NA	NA	NA	NA	NA	NA	0	0	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	526	526	148	101	250	1558	177	99	326	443	94	709	82	1000	104	692	59	587	928	92	696	401	1549	461	667	739	91	176	127	368	1023	136	1538	61	112	1686	554	401	768	1039	377	651	165	937	133	191	639	52	97	55	563	1237	35	72	85	104	21	597	737	192	121	18	48	390
GCF_024228315.1	NZ_CP100457	NZ_CP100457.1	Halomarina sp. BND7 plasmid unnamed3; complete sequence.	31938	30939	41248	40542	144667	0.22	0.21	0.29	0.28	0.57	0.9447	0.0245	0.9758	1.9875	78	65	143	21893	19989	28646	28886	99414	0.22	0.2	0.29	0.29	0.58	0.8951	0.1799	0.8423	1.9648	114	75	62	137	21141	19187	27639	27910	95877	0.22	0.2	0.29	0.29	0.58	0.8949	0.1811	0.8413	1.9648	114	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	1	1	15	15	24	21	75	0.2	0.2	0.32	0.28	0	0.6	0.8747	0.0667	0.9375	1.969	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	578	431	223	273	617	1485	425	405	286	454	304	1031	282	986	287	590	195	556	866	263	529	538	1497	842	714	651	187	256	337	487	1065	409	1296	122	353	1423	535	388	665	842	353	567	303	788	109	494	571	98	157	242	516	1034	106	180	79	293	47	536	597	355	319	32	58	452
GCF_024228315.1	NZ_CP100458	NZ_CP100458.1	Halomarina sp. BND7 plasmid unnamed4; complete sequence.	19267	17697	22129	22418	81511	0.24	0.22	0.27	0.28	0.55	0.9462	0.049	0.9528	1.9931	47	13	60	17683	14844	19580	20097	72204	0.25	0.2	0.27	0.28	0.55	0.9085	0.1516	0.8649	1.9798	62	47	13	60	17683	14844	19580	20097	72204	0.25	0.2	0.27	0.28	0.55	0.9085	0.1516	0.8649	1.9798	62	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	325	420	170	273	452	1299	390	371	233	312	304	988	233	551	238	449	192	331	686	197	405	381	978	862	639	403	173	188	303	289	666	388	745	119	309	1103	339	234	529	504	258	360	334	405	79	360	380	101	110	192	374	605	101	150	58	304	10	394	374	333	321	24	26	444
GCF_024228315.1	NZ_CP100459	NZ_CP100459.1	Halomarina sp. BND7 plasmid unnamed5; complete sequence.	16451	16183	31813	31413	95860	0.17	0.17	0.33	0.33	0.66	0.9119	0.0145	0.9856	1.9252	49	45	94	12390	11191	24975	24800	73356	0.18	0.15	0.33	0.34	0.67	0.8618	0.2202	0.8192	1.8895	67	47	45	92	12266	11101	24818	24622	72807	0.18	0.15	0.33	0.34	0.67	0.8613	0.2202	0.8195	1.8881	67	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	346	337	65	45	109	1430	104	46	229	253	35	388	40	781	82	509	36	584	790	45	651	244	1461	250	459	614	28	76	58	243	834	55	1505	32	37	1682	468	405	727	997	358	793	92	978	137	88	621	34	62	27	582	1445	29	19	55	34	17	634	711	114	52	8	67	232
GCF_024228315.1	NZ_CP100460	NZ_CP100460.1	Halomarina sp. BND7 plasmid unnamed6; complete sequence.	2861	2564	5551	5750	16726	0.17	0.15	0.33	0.34	0.68	0.9128	0.0724	0.9308	1.9082	15	4	19	2227	1799	4351	4553	12930	0.18	0.14	0.33	0.36	0.69	0.8651	0.1974	0.8284	1.8845	33	15	4	19	2227	1799	4351	4553	12930	0.18	0.14	0.33	0.36	0.69	0.8651	0.1974	0.8284	1.8845	33	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	55	63	11	17	41	358	29	11	49	46	14	45	20	159	9	63	8	90	81	16	60	41	241	93	139	103	4	9	20	21	118	16	201	1	9	280	81	89	92	174	38	183	18	152	16	21	116	1	15	7	92	289	3	12	1	10	3	141	107	46	17	8	8	29