GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_030553305.1	NZ_JARRAH010000001	NZ_JARRAH010000001.1	Halomarina sp. PSRA2 idba_17_124_22_1; whole genome shotgun sequence.	428771	428939	961151	963301	2782162	0.15	0.15	0.35	0.35	0.69	0.912	0.0013	0.9987	1.8912	1472	1496	2968	397609	350954	885175	848023	2481761	0.16	0.14	0.35	0.34	0.7	0.8588	0.1999	0.83	1.8693	1851	1443	1443	2886	392561	346283	875981	838545	2453370	0.16	0.14	0.35	0.34	0.7	0.8582	0.2004	0.8296	1.8675	1839	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2	2	121	73	230	257	681	0.18	0.11	0.34	0.38	0	0.72	0.8683	0.2857	0.7714	1.8437	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	20	39	59	818	901	1326	1473	4518	0.18	0.2	0.29	0.33	0	0.62	0.8774	0.1751	0.8468	1.9448	3	3	1093	794	1169	1449	4505	0.24	0.16	0.28	0.32	0	0.6	0.9084	0.2826	0.7632	1.9525	13208	10013	1344	1070	3535	53778	1944	1461	8082	9019	702	12968	850	25477	2027	15641	686	17916	26246	685	21087	6779	51620	2312	15754	23254	643	1843	946	4287	20210	1003	60766	2178	1212	65616	16002	17404	20974	44593	11755	31931	2269	40714	3849	1553	20788	729	2389	507	17015	45874	342	648	1164	1267	677	17196	19571	3655	1307	339	1869	5247
GCF_030553305.1	NZ_JARRAH010000002	NZ_JARRAH010000002.1	Halomarina sp. PSRA2 idba_17_124_22_2; whole genome shotgun sequence.	45376	44317	78870	78908	247471	0.18	0.18	0.32	0.32	0.64	0.9211	0.012	0.9881	1.9447	121	95	216	36740	32677	63715	64759	197891	0.19	0.17	0.32	0.33	0.64	0.8829	0.1645	0.8559	1.9279	113	120	93	213	36356	32404	63125	64060	195945	0.19	0.17	0.32	0.32	0.64	0.8828	0.1627	0.8573	1.928	113	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1185	695	272	255	772	3620	544	290	615	781	185	1537	172	2113	330	1345	131	1353	2152	184	1557	1018	3354	718	1275	1623	157	363	255	832	2248	277	3969	171	317	4517	1296	962	1714	2570	788	1321	319	2344	216	467	1664	138	277	151	1433	3083	78	140	145	333	35	1265	1724	521	259	41	137	712
GCF_030553305.1	NZ_JARRAH010000003	NZ_JARRAH010000003.1	Halomarina sp. PSRA2 idba_17_124_22_3; whole genome shotgun sequence.	37286	37258	83200	83179	240923	0.15	0.15	0.35	0.35	0.69	0.9035	0.0005	0.9995	1.8925	106	111	217	32238	28902	72086	70603	203829	0.16	0.14	0.35	0.34	0.7	0.8616	0.1741	0.85	1.8749	51	105	110	215	32040	28778	71684	70205	202707	0.16	0.14	0.35	0.34	0.7	0.8616	0.173	0.8508	1.8749	47	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1186	782	90	62	253	4174	128	82	680	829	21	975	45	2292	172	1396	22	1540	2148	47	1846	607	4075	113	1215	2013	40	126	51	377	1817	50	5230	164	98	5321	1390	1406	1845	3414	981	2002	135	3336	303	133	1970	55	228	20	1560	3981	17	36	129	100	48	1586	1810	300	88	15	151	463
GCF_030553305.1	NZ_JARRAH010000004	NZ_JARRAH010000004.1	Halomarina sp. PSRA2 idba_17_124_22_4; whole genome shotgun sequence.	28052	30275	40023	39604	137954	0.2	0.22	0.29	0.29	0.58	0.9406	0.0434	0.9581	1.9823	49	94	143	26485	22503	34068	34593	117649	0.23	0.19	0.29	0.3	0.58	0.8964	0.1933	0.8326	1.9655	133	48	93	141	26332	22338	33832	34363	116865	0.23	0.19	0.29	0.3	0.58	0.8965	0.1951	0.8311	1.9654	133	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	0	1	15	16	23	21	75	0.2	0.21	0.31	0.28	0	0.59	0.8747	0.0777	0.9253	1.977	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	594	540	249	330	664	2063	561	465	409	507	336	1481	277	995	340	674	242	606	1101	218	747	571	1833	1238	983	721	192	271	347	520	1321	426	1548	116	398	2204	701	467	852	988	425	598	394	895	116	509	683	112	187	230	639	1151	109	198	93	412	33	827	773	419	387	35	73	561
GCF_030553305.1	NZ_JARRAH010000005	NZ_JARRAH010000005.1	Halomarina sp. PSRA2 idba_17_124_22_5; whole genome shotgun sequence.	23403	23332	30608	30407	107750	0.22	0.22	0.28	0.28	0.57	0.944	0.0048	0.9952	1.9873	48	46	94	18673	15967	23578	24591	82809	0.23	0.19	0.28	0.3	0.58	0.8988	0.1731	0.848	1.9673	60	48	46	94	18673	15967	23578	24591	82809	0.23	0.19	0.28	0.3	0.58	0.8988	0.1731	0.848	1.9673	60	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	487	413	201	218	466	1507	373	316	231	356	218	963	187	661	266	567	164	462	828	171	540	459	1208	701	656	601	125	236	245	447	890	279	1148	100	300	1512	426	334	621	732	325	459	252	568	104	347	548	106	168	164	482	774	91	146	68	257	14	499	468	326	283	26	53	460
GCF_030553305.1	NZ_JARRAH010000006	NZ_JARRAH010000006.1	Halomarina sp. PSRA2 idba_17_124_22_6; whole genome shotgun sequence.	13771	14132	32964	33086	93953	0.15	0.15	0.35	0.35	0.7	0.9012	0.0148	0.9854	1.8775	35	48	83	11601	11686	30378	27821	81486	0.14	0.14	0.37	0.34	0.71	0.8557	0.1923	0.8342	1.854	69	35	47	82	11546	11645	30291	27728	81210	0.14	0.14	0.37	0.34	0.71	0.8555	0.1924	0.8342	1.8531	69	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	390	278	30	16	81	1508	32	17	238	296	7	267	17	856	50	486	7	578	917	21	837	187	1867	25	510	739	8	52	16	88	675	17	2202	47	18	2011	546	608	852	1524	419	1165	47	1433	110	28	712	14	85	6	609	1724	5	15	26	24	16	637	743	118	22	5	61	125