Assembly Assembly | Locus_ID Locus_ID | Version Version | Definition Sequence description | bp_chromo_A Total number of 'A' nucleotides in the whole sequence | bp_chromo_T Total number of 'T' nucleotides in the whole sequence | bp_chromo_C Total number of 'C' nucleotides in the whole sequence | bp_chromo_G Total number of 'G' nucleotides in the whole sequence | bp_chromo_N Total number of 'N' nucleotides in the whole sequence | bp_chromo_tot Total number of nucleotides in the whole sequence | fr_chromo_A Frequency of 'A' nucleotides in the whole sequence | fr_chromo_T Frequency of 'T' nucleotides in the whole sequence | fr_chromo_C Frequency of 'C' nucleotides in the whole sequence | fr_chromo_G Frequency of 'G' nucleotides in the whole sequence | fr_chromo_N Frequency of 'N' nucleotides in the whole sequence | GC_chromo Percentage of āGā + āCā nucleotides in the whole sequence | topo_entropy_chromo Topological entropy of the whole sequence | chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence | chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee | shannon_chromo Shannon entropy of the whole sequence | n_gene_pos Number of genes in the positive strand | n_gene_neg Number of genes in the negative strand | n_gene_tot Total number of genes in the chromosome | bp_gene_A Number of 'A' bases in total genes | bp_gene_T Number of 'T' bases in total genes | bp_gene_C Number of 'C' bases in total genes | bp_gene_G Number of 'G' bases in total genes | bp_gene_N Number of 'N' bases in total genes | bp_gene_tot Total number of bases in total genes | fr_gene_A Frequency of 'A' bases among total gene bases | fr_gene_T Frequency of 'T' bases among total gene bases | fr_gene_C Frequency of 'C' bases among total gene bases | fr_gene_G Frequency of 'G' bases among total gene bases | fr_gene_N Frequency of 'N' bases among total gene bases | GC_gene Percentage of 'G' and 'C' bases in total genes | topo_entropy_gene Topological entropy calculated from total gene sequences | chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes | chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes | shannon_gene Shannon entropy score for total genes | bp_gene_overlap_tot Number of bases overlapping between genes on two strands | n_cds_pos Number of CDS in the positive strand | n_cds_neg Number of CDS in the negative strand | n_cds_tot Total number of CDS in the chromosome | bp_cds_A Number of 'A' bases in total CDS (coding sequences) | bp_cds_T Number of 'T' bases in total CDS | bp_cds_C Number of 'C' bases in total CDS | bp_cds_G Number of 'G' bases in total CDS | bp_cds_N Number of 'N' bases in total CDS | bp_cds_tot Total bases in total CDS | fr_cds_A Frequency of 'A' bases among total CDS bases | fr_cds_T Frequency of 'T' bases among total CDS bases | fr_cds_C Frequency of 'C' bases among total CDS bases | fr_cds_G Frequency of 'G' bases among total CDS bases | fr_cds_N Frequency of 'N' bases among total CDS bases | GC_cds Percentage of 'G' and 'C' bases in total CDS | topo_entropy_cds Topological entropy calculated from total CDS sequences | chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS | chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS | shannon_cds Shannon entropy score for total CDS | bp_cds_overlap_tot Number of bases overlapping between CDS on two strands | bp_cds_intron_A Number of 'A' bases in total introns between CDS | bp_cds_intron_T Number of 'T' bases in total introns between CDS | bp_cds_intron_C Number of 'C' bases in total introns between CDS | bp_cds_intron_G Number of 'G' bases in total introns between CDS | bp_cds_intron_N Number of 'N' bases in total introns between CDS | bp_cds_intron_tot Total bases in total introns between CDS | fr_cds_intron_A Frequency of 'A' bases in total introns between CDS | fr_cds_intron_T Frequency of 'T' bases in total introns between CDS | fr_cds_intron_C Frequency of 'C' bases in total introns between CDS | fr_cds_intron_G Frequency of 'G' bases in total introns between CDS | fr_cds_intron_N Frequency of 'N' bases in total introns between CDS | GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS | topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS | chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS | chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS | shannon_cds_intron Shannon entropy score for total introns between CDS | bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands | n_ncRNA_pos Number of ncRNA in the positive strand | n_ncRNA_neg Number of ncRNA in the negative strand | n_ncRNA_tot Total number of ncRNA in the chromosome | bp_ncRNA_A Number of 'A' bases in total ncRNA | bp_ncRNA_T bp_ncRNA_T | bp_ncRNA_C Number of 'C' bases in total ncRNA | bp_ncRNA_G Number of 'G' bases in total ncRNA | bp_ncRNA_N Number of 'N' bases in total ncRNA | bp_ncRNA_tot Total bases in total ncRNA | fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases | fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases | fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases | fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases | fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases | GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA | topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences | chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA | chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA | shannon_ncRNA Shannon entropy score for total ncRNA | bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands | bp_nc_intron_A Number of 'A' bases in total introns between ncRNA | bp_nc_intron_T Number of 'T' bases in total introns between ncRNA | bp_nc_intron_C Number of 'C' bases in total introns between ncRNA | bp_nc_intron_G Number of 'G' bases in total introns between ncRNA | bp_nc_intron_N Number of 'N' bases in total introns between ncRNA | bp_nc_intron_tot Total bases in total introns between ncRNA | fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA | fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA | fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA | fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA | fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA | GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA | topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA | chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA | chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA | shannon_nc_intron Shannon entropy score for total introns between ncRNA | bp_nc_intron_overlap_tot Number of bases overlapping between introns between ncRNA on two strands | n_tRNA_pos Number of tRNA in the positive strand | n_tRNA_neg Number of tRNA in the negative strand | n_tRNA_tot Total number of tRNA in the chromosome | bp_tRNA_A Number of 'A' bases in total tRNA | bp_tRNA_T Number of 'T' bases in total tRNA | bp_tRNA_C Number of 'C' bases in total tRNA | bp_tRNA_G Number of 'G' bases in total tRNA | bp_tRNA_N Number of 'N' bases in total tRNA | bp_tRNA_tot Total bases in total tRNA | fr_tRNA_A Frequency of 'A' bases among total tRNA bases | fr_tRNA_T Frequency of 'T' bases among total tRNA bases | fr_tRNA_C Frequency of 'C' bases among total tRNA bases | fr_tRNA_G Frequency of 'G' bases among total tRNA bases | fr_tRNA_N Frequency of 'N' bases among total tRNA bases | GC_tRNA Percentage of 'G' and 'C' bases in total tRNA | topo_entropy_tRNA Topological entropy calculated from total tRNA sequences | chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA | chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA | shannon_tRNA Shannon entropy score for total tRNA | bp_tRNA_overlap_tot Number of bases overlapping between tRNA on two strands | n_rRNA_pos Number of rRNA in the positive strand | n_rRNA_neg Number of rRNA in the negative strand | n_rRNA_tot Total number of rRNA in the chromosome | bp_rRNA_A Number of 'A' bases in total rRNA | bp_rRNA_T Number of 'T' bases in total rRNA | bp_rRNA_C Number of 'C' bases in total rRNA | bp_rRNA_G Number of 'G' bases in total rRNA | bp_rRNA_N Number of 'N' bases in total rRNA | bp_rRNA_tot Total bases in total rRNA | fr_rRNA_A Frequency of 'A' bases among total rRNA bases | fr_rRNA_T Frequency of 'T' bases among total rRNA bases | fr_rRNA_C Frequency of 'C' bases among total rRNA bases | fr_rRNA_G Frequency of 'G' bases among total rRNA bases | fr_rRNA_N Frequency of 'N' bases among total rRNA bases | GC_rRNA Percentage of 'G' and 'C' bases in total rRNA | topo_entropy_rRNA Topological entropy calculated from total rRNA sequences | chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA | chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA | shannon_rRNA Shannon entropy score for total rRNA | bp_rRNA_overlap_tot Number of bases overlapping between rRNA on two strands | ATG ATG | AAG AAG | GTA GTA | ACT ACT | GCA GCA | GAG GAG | GCT GCT | ATT ATT | TCC TCC | TGG TGG | AAT AAT | GAA GAA | TCA TCA | ACG ACG | AGT AGT | AAC AAC | TCT TCT | GTG GTG | TTC TTC | TTT TTT | CTG CTG | GGT GGT | CTC CTC | GAT GAT | CAG CAG | ACC ACC | CTA CTA | TTG TTG | TAT TAT | GGA GGA | ATC ATC | CTT CTT | GTC GTC | ATA ATA | ACA ACA | GAC GAC | CAC CAC | CCC CCC | TAC TAC | GCC GCC | AGC AGC | CGC CGC | AAA AAA | GGC GGC | TGC TGC | GTT GTT | GGG GGG | AGA AGA | TGT TGT | CAT CAT | TCG TCG | GCG GCG | TTA TTA | CCT CCT | AGG AGG | CCA CCA | TAG TAG | CGG CGG | CCG CCG | CGT CGT | CAA CAA | TAA TAA | TGA TGA | CGA CGA |
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GCF_020405185.1 | NZ_CP084463 | NZ_CP084463.1 | Halomicrobium salinisoli strain LT50 chromosome; complete genome. | 514145 | 517685 | 1170166 | 1169613 | 0 | 3371609 | 0.15 | 0.15 | 0.35 | 0.35 | 0 | 0.69 | 0.9159 | 0.0037 | 0.9963 | 1.8885 | 1685 | 1699 | 3384 | 479493 | 404624 | 1030405 | 1038156 | 0 | 2952678 | 0.16 | 0.14 | 0.34 | 0.35 | 0 | 0.7 | 0.8609 | 0.1961 | 0.8329 | 1.8689 | 2041 | 1643 | 1657 | 3300 | 471980 | 398103 | 1018149 | 1024912 | 0 | 2913144 | 0.16 | 0.14 | 0.35 | 0.35 | 0 | 0.7 | 0.8605 | 0.1967 | 0.8325 | 1.8676 | 2000 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | NA | 0 | 0 | 2 | 2 | 114 | 77 | 213 | 240 | 0 | 644 | 0.18 | 0.12 | 0.33 | 0.37 | 0 | 0.7 | 0.8721 | 0.2414 | 0.8082 | 1.8603 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 24 | 26 | 50 | 668 | 725 | 1135 | 1240 | 0 | 3768 | 0.18 | 0.19 | 0.3 | 0.33 | 0 | 0.63 | 0.8704 | 0.1762 | 0.8473 | 1.935 | 0 | 6 | 3 | 9 | 3193 | 2338 | 3653 | 4373 | 0 | 13557 | 0.22 | 0.17 | 0.3 | 0.32 | 0 | 0.61 | 0.9003 | 0.2195 | 0.8037 | 1.9517 | 0 | 15299 | 12507 | 1594 | 1816 | 3878 | 74046 | 3146 | 1275 | 13150 | 11266 | 1007 | 11210 | 1076 | 27839 | 1635 | 19094 | 1088 | 21484 | 28767 | 928 | 41222 | 5800 | 38897 | 5700 | 21739 | 26884 | 1085 | 1330 | 1263 | 5671 | 29290 | 1309 | 67969 | 1014 | 1367 | 82207 | 17821 | 19223 | 24240 | 59195 | 14350 | 30883 | 1511 | 55158 | 4802 | 2011 | 20320 | 883 | 1644 | 642 | 18768 | 47990 | 384 | 713 | 2016 | 1218 | 894 | 26291 | 24992 | 2262 | 1077 | 359 | 2047 | 4502 |
GCF_020405185.1 | NZ_CP084464 | NZ_CP084464.1 | Halomicrobium salinisoli strain LT50 plasmid unnamed1; complete sequence. | 63674 | 64193 | 133180 | 133115 | 0 | 394162 | 0.16 | 0.16 | 0.34 | 0.34 | 0 | 0.68 | 0.9191 | 0.0043 | 0.9957 | 1.9091 | 156 | 202 | 358 | 55121 | 48551 | 111567 | 113480 | 0 | 328719 | 0.17 | 0.15 | 0.34 | 0.35 | 0 | 0.68 | 0.867 | 0.1824 | 0.8424 | 1.8849 | 281 | 154 | 192 | 346 | 52879 | 46832 | 108234 | 109800 | 0 | 317745 | 0.17 | 0.15 | 0.34 | 0.35 | 0 | 0.68 | 0.8666 | 0.1813 | 0.8434 | 1.8841 | 268 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 1 | 1 | 12 | 13 | 21 | 23 | 0 | 69 | 0.17 | 0.19 | 0.3 | 0.33 | 0 | 0.64 | 0.8617 | 0.0855 | 0.9181 | 1.9432 | 0 | 0 | 3 | 3 | 1062 | 786 | 1199 | 1438 | 0 | 4485 | 0.22 | 0.17 | 0.29 | 0.31 | 0 | 0.61 | 0.9029 | 0.2154 | 0.8068 | 1.9537 | 0 | 1644 | 1167 | 226 | 362 | 594 | 6749 | 455 | 212 | 1287 | 1405 | 178 | 1599 | 212 | 3336 | 316 | 2030 | 157 | 2272 | 3340 | 165 | 3953 | 750 | 4800 | 963 | 2245 | 2661 | 164 | 215 | 246 | 825 | 3419 | 188 | 7263 | 143 | 282 | 8267 | 1942 | 1824 | 2737 | 5404 | 1612 | 2601 | 282 | 5235 | 497 | 354 | 2576 | 159 | 262 | 131 | 2266 | 5610 | 54 | 111 | 310 | 256 | 78 | 2963 | 3027 | 381 | 171 | 32 | 236 | 714 |
GCF_020405185.1 | NZ_CP084465 | NZ_CP084465.1 | Halomicrobium salinisoli strain LT50 plasmid unnamed2; complete sequence. | 17315 | 17104 | 23179 | 23098 | 0 | 80696 | 0.21 | 0.21 | 0.29 | 0.29 | 0 | 0.57 | 0.941 | 0.0079 | 0.9922 | 1.9844 | 27 | 28 | 55 | 15235 | 12033 | 18651 | 19406 | 0 | 65325 | 0.24 | 0.18 | 0.28 | 0.3 | 0 | 0.57 | 0.896 | 0.2042 | 0.8276 | 1.9628 | 52 | 26 | 28 | 54 | 14953 | 11824 | 18500 | 19193 | 0 | 64470 | 0.24 | 0.18 | 0.28 | 0.3 | 0 | 0.57 | 0.8956 | 0.2021 | 0.8294 | 1.9628 | 52 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 282 | 424 | 141 | 184 | 298 | 1328 | 233 | 195 | 221 | 270 | 166 | 760 | 141 | 577 | 206 | 451 | 124 | 307 | 624 | 128 | 469 | 273 | 883 | 617 | 668 | 341 | 125 | 134 | 190 | 254 | 674 | 207 | 815 | 81 | 192 | 1409 | 344 | 251 | 565 | 525 | 297 | 419 | 198 | 456 | 109 | 214 | 329 | 68 | 132 | 109 | 436 | 563 | 76 | 93 | 69 | 173 | 12 | 496 | 406 | 193 | 216 | 19 | 24 | 305 |