GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_029338335.1	NZ_CP119796	NZ_CP119796.1	Halomontanus rarus strain TS33 chromosome; complete genome.	757518	757119	1302131	1305138	4121906	0.18	0.18	0.32	0.32	0.63	0.9267	0.0014	0.9986	1.9487	1979	1929	3908	659868	552552	1100271	1109093	3421784	0.2	0.17	0.32	0.32	0.64	0.8763	0.1927	0.8345	1.9257	2410	1923	1871	3794	647885	541774	1081537	1089719	3360915	0.2	0.16	0.32	0.32	0.64	0.8761	0.1932	0.8342	1.9253	2354	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2	2	173	107	289	312	881	0.19	0.12	0.33	0.36	0	0.68	0.8864	0.2671	0.7769	1.8857	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	23	23	46	633	696	1031	1130	3490	0.18	0.2	0.29	0.32	0	0.62	0.8777	0.1742	0.8474	1.944	3	0	3	1135	838	1139	1407	4519	0.24	0.18	0.27	0.31	0	0.58	0.9085	0.2062	0.8159	1.9718	17941	11498	3802	4287	10096	70922	6525	5897	13034	13398	4161	32364	2743	35805	6002	23151	2665	18539	31795	4517	25386	14718	57531	18178	21693	31154	1931	6147	3949	15662	39482	4528	67288	1832	3730	77433	20710	17205	26072	45326	14456	25951	7107	43770	3957	8763	20122	2438	4481	2018	26948	50691	2154	1837	1991	3475	833	22086	28181	6061	5028	614	2347	15899
GCF_029338335.1	NZ_CP119797	NZ_CP119797.1	Halomontanus rarus strain TS33 plasmid unnamed1; complete sequence.	169150	168345	289374	289160	916029	0.18	0.18	0.32	0.32	0.63	0.9302	0.0028	0.9973	1.9495	363	364	727	143469	121366	240796	243551	749182	0.19	0.17	0.32	0.32	0.64	0.8808	0.1706	0.851	1.9307	342	355	353	708	140335	118684	236136	238597	733752	0.19	0.17	0.32	0.32	0.64	0.8809	0.1703	0.8513	1.9304	325	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	1	1	13	16	19	24	72	0.18	0.22	0.26	0.33	0	0.6	0.8987	0.2197	0.8021	1.9636	0	3	3	1135	838	1139	1407	4519	0.24	0.18	0.27	0.31	0	0.58	0.9085	0.2063	0.8158	1.9716	4047	2108	913	804	2020	15025	1332	1112	2755	3703	875	6712	476	8106	1180	5470	465	4148	7486	910	5649	2972	12269	3963	4459	6190	475	1295	863	3723	8827	999	13896	428	639	17222	5391	3882	6562	8715	3052	5366	1260	9646	1029	1946	4782	543	1041	463	5712	10793	358	431	522	740	151	5135	7068	1207	974	114	443	3742
GCF_029338335.1	NZ_CP119798	NZ_CP119798.1	Halomontanus rarus strain TS33 plasmid unnamed2; complete sequence.	37656	37230	50441	51065	176392	0.21	0.21	0.29	0.29	0.58	0.9353	0.0118	0.9882	1.9835	78	55	133	29679	24359	39264	39676	132978	0.23	0.19	0.29	0.29	0.58	0.8981	0.17	0.852	1.9639	155	77	52	129	29149	23983	38677	39105	130914	0.23	0.19	0.29	0.29	0.58	0.8981	0.1676	0.8541	1.9636	43	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	738	500	300	384	603	2364	422	370	458	738	368	1502	279	1290	326	1032	225	669	1205	239	849	630	1794	1262	958	875	195	308	306	637	1393	407	1791	158	355	2726	925	609	1144	1151	487	771	404	1179	212	519	738	109	222	189	863	1244	133	201	119	382	33	826	1052	384	353	32	64	637
GCF_029338335.1	NZ_CP119799	NZ_CP119799.1	Halomontanus rarus strain TS33 plasmid unnamed3; complete sequence.	66399	67454	95263	93986	323102	0.21	0.21	0.29	0.29	0.59	0.9443	0.0146	0.9855	1.9787	117	128	245	52026	44380	72852	74243	243501	0.22	0.19	0.29	0.3	0.59	0.8952	0.1529	0.8641	1.9616	296	113	120	233	49592	42270	69514	70746	232122	0.22	0.19	0.29	0.3	0.59	0.8953	0.1521	0.8647	1.9616	271	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1280	836	471	572	962	4410	734	689	775	1282	551	2680	392	2264	509	1728	340	1271	2288	452	1453	1185	3561	2011	1506	1683	282	550	535	1170	2643	632	3345	199	509	4698	1620	1054	1936	2242	844	1472	599	2285	325	952	1338	187	324	333	1663	2589	207	291	180	568	49	1387	1921	583	569	55	129	1224
GCF_029338335.1	NZ_CP119800	NZ_CP119800.1	Halomontanus rarus strain TS33 plasmid unnamed4; complete sequence.	71826	73426	129067	127824	402143	0.18	0.18	0.32	0.32	0.64	0.9236	0.0159	0.9843	1.9436	183	148	331	60033	50197	104549	104485	319264	0.19	0.16	0.32	0.32	0.65	0.8769	0.1865	0.8389	1.9247	150	179	147	326	59612	49866	103868	103817	317163	0.19	0.16	0.32	0.32	0.65	0.8769	0.1865	0.8388	1.9245	145	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	0	1	11	10	25	24	70	0.08	0.32	0.43	0.18	0	0.6	0.9341	1.05	0.4545	1.4359	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1652	928	327	343	767	6511	507	431	1220	1332	292	3023	160	3518	512	2313	203	1780	3145	378	2395	1238	5401	1591	2012	2983	166	501	351	1442	3767	348	6593	133	248	7578	2175	1679	2696	4206	1399	2434	552	4285	420	707	2075	188	440	129	2619	4934	114	146	201	242	81	2284	3007	507	390	56	189	1477
GCF_029338335.1	NZ_CP119801	NZ_CP119801.1	Halomontanus rarus strain TS33 plasmid unnamed5; complete sequence.	12230	12005	17207	17438	58880	0.21	0.2	0.29	0.3	0.59	0.9332	0.016	0.9842	1.9773	46	40	86	11338	8512	14931	14953	49734	0.23	0.17	0.29	0.3	0.6	0.8823	0.2235	0.8102	1.9529	153	46	40	86	11338	8512	14931	14953	49734	0.23	0.17	0.29	0.3	0.6	0.8823	0.2235	0.8102	1.9529	153	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	262	234	94	88	230	979	137	142	153	289	100	588	78	540	121	376	75	230	444	69	253	232	759	400	332	375	51	96	126	189	537	127	640	35	133	1189	327	197	404	447	147	366	234	539	91	157	219	36	104	67	403	489	37	46	24	130	19	284	439	133	183	25	42	286