GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	fr_cds_N Frequency of 'N' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_900100875.1	NZ_FNKQ01000007	NZ_FNKQ01000007.1	Halopelagius longus strain CGMCC 1.12397; whole genome shotgun sequence.	24572	26400	32594	32098	115664	0.21	0.23	0.28	0.28	0.56	0.9381	0.0435	0.9578	1.9894	38	60	98	20340	16268	24032	25449	86089	0.24	0.19	0.28	0.29	0.57	0.8975	0.2038	0.8236	1.9652	41	38	57	95	19853	15863	23500	24919	84135	0.24	0.19	0.28	0.29	0	0.57	0.8973	0.2034	0.824	1.9647	41	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	470	487	229	272	515	1580	360	325	275	334	265	1085	187	719	239	684	161	455	774	195	398	490	1160	706	582	556	178	182	211	492	835	345	1118	170	265	1560	477	328	638	712	276	383	334	729	110	378	540	124	108	149	462	861	149	161	92	240	22	383	570	256	254	34	39	377
GCF_900100875.1	NZ_FNKQ01000006	NZ_FNKQ01000006.1	Halopelagius longus strain CGMCC 1.12397; whole genome shotgun sequence.	33507	32950	60997	60979	188433	0.18	0.17	0.32	0.32	0.65	0.9164	0.0085	0.9915	1.9364	77	84	161	28340	24213	51480	51135	155168	0.19	0.16	0.33	0.33	0.66	0.873	0.197	0.8322	1.9141	112	76	82	158	27398	23503	49691	49294	149886	0.19	0.16	0.33	0.33	0	0.66	0.8729	0.1976	0.8317	1.9142	112	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	744	662	202	112	291	2690	198	226	834	574	70	1325	77	1837	217	1258	128	1186	1655	106	999	432	2701	281	819	1196	88	317	91	678	1258	216	3122	276	91	3635	907	877	1344	1845	630	1370	267	2039	210	349	1099	140	92	52	1471	2539	74	64	124	53	22	1189	1385	219	254	42	94	619
GCF_900100875.1	NZ_FNKQ01000005	NZ_FNKQ01000005.1	Halopelagius longus strain CGMCC 1.12397; whole genome shotgun sequence.	51315	50271	92836	93332	287754	0.18	0.17	0.32	0.32	0.65	0.9225	0.0129	0.9872	1.9367	121	109	230	44174	37706	78420	79424	239724	0.18	0.16	0.32	0.33	0.65	0.878	0.1957	0.8313	1.9179	122	119	105	224	43171	36830	76538	77581	234120	0.18	0.16	0.32	0.33	0	0.65	0.8781	0.1956	0.8314	1.918	122	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1356	1057	328	185	441	4385	313	327	1177	1191	136	2038	78	2854	367	1961	171	1838	2706	162	1714	675	4003	437	1353	1878	138	492	159	1084	2181	262	4707	452	133	5403	1366	1355	2281	3091	1082	1892	360	3287	365	492	1774	169	181	82	1901	3938	121	81	180	79	38	1727	2206	312	433	45	141	919
GCF_900100875.1	NZ_FNKQ01000008	NZ_FNKQ01000008.1	Halopelagius longus strain CGMCC 1.12397; whole genome shotgun sequence.	308	234	340	388	1270	0.24	0.18	0.27	0.31	0.57	0.9311	0.2025	0.818	1.9769	1	0	1	304	232	331	385	1252	0.24	0.19	0.26	0.31	0.57	0.9311	0.2097	0.8114	1.9771	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	0	1	304	232	331	385	1252	0.24	0.19	0.26	0.31	0	0.57	0.9311	0.2097	0.8114	1.9771	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GCF_900100875.1	NZ_FNKQ01000004	NZ_FNKQ01000004.1	Halopelagius longus strain CGMCC 1.12397; whole genome shotgun sequence.	55170	55314	97959	97598	306041	0.18	0.18	0.32	0.32	0.64	0.9252	0.0031	0.9969	1.9435	136	120	256	46856	39705	80528	82044	249133	0.19	0.16	0.32	0.33	0.65	0.8794	0.1981	0.8309	1.9206	106	132	118	250	46217	39008	79575	81098	245898	0.19	0.16	0.32	0.33	0	0.65	0.8789	0.1981	0.8309	1.9198	106	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1528	1126	318	228	615	4607	379	339	1125	1125	166	2258	139	2956	386	2032	192	1944	2805	203	1740	768	4236	643	1494	1887	165	548	194	1107	2395	360	4707	429	193	5645	1469	1367	2206	3133	1009	1957	448	3370	376	520	1828	199	180	105	2019	4219	150	114	182	116	36	1752	2284	332	477	58	156	922
GCF_900100875.1	NZ_FNKQ01000009	NZ_FNKQ01000009.1	Halopelagius longus strain CGMCC 1.12397; whole genome shotgun sequence.	234	308	423	330	1295	0.18	0.24	0.33	0.25	0.58	0.9212	0.26	0.7699	1.9687	0	1	1	304	234	325	419	1282	0.24	0.18	0.25	0.33	0.58	0.9205	0.2565	0.7727	1.9695	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	1	1	304	234	325	419	1282	0.24	0.18	0.25	0.33	0	0.58	0.9205	0.2565	0.7727	1.9695	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GCF_900100875.1	NZ_FNKQ01000003	NZ_FNKQ01000003.1	Halopelagius longus strain CGMCC 1.12397; whole genome shotgun sequence.	142912	139993	286926	292594	862425	0.17	0.16	0.33	0.34	0.67	0.9099	0.0201	0.9801	1.9128	446	467	913	132518	109806	255594	255840	753758	0.18	0.15	0.33	0.34	0.67	0.8667	0.2147	0.8186	1.8958	388	429	451	880	130269	107338	250493	250830	738930	0.18	0.15	0.33	0.34	0	0.67	0.8661	0.2151	0.8183	1.8947	358	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	10	7	17	229	263	363	413	1268	0.18	0.21	0.29	0.33	0	0.61	0.8919	0.1943	0.8281	1.952	1	0	1	37	36	39	41	153	0.24	0.24	0.25	0.27	0	0.52	0.8617	0.0387	0.9621	1.9982	4174	3730	624	332	1263	15550	640	818	3863	2506	217	7034	176	8623	755	5162	462	6367	7830	386	4938	1705	13456	1004	3894	5558	258	1513	236	2378	6190	730	15797	1156	284	19248	4282	4986	5885	12354	2566	8287	1147	12432	1153	1085	4838	510	495	163	5900	14017	380	171	461	141	176	5056	6048	772	1164	195	509	2280
GCF_900100875.1	NZ_FNKQ01000002	NZ_FNKQ01000002.1	Halopelagius longus strain CGMCC 1.12397; whole genome shotgun sequence.	165112	164967	325272	323043	978394	0.17	0.17	0.33	0.33	0.66	0.9175	0.0039	0.9961	1.9223	497	478	975	156937	130216	290048	291770	868971	0.18	0.15	0.33	0.34	0.66	0.8696	0.2096	0.8225	1.9034	521	477	469	946	154233	128002	285145	286798	854178	0.18	0.15	0.33	0.34	0	0.67	0.8694	0.2112	0.8213	1.9028	494	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	1	56	36	105	114	311	0.18	0.12	0.34	0.37	0	0.7	0.8819	0.2585	0.782	1.8651	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	6	4	10	130	140	228	246	744	0.18	0.19	0.31	0.33	0	0.64	0.8677	0.1363	0.8782	1.9302	0	1	1	37	36	39	41	153	0.24	0.24	0.25	0.27	0	0.52	0.8617	0.0387	0.9621	1.9982	4972	4161	834	488	1481	17883	771	967	4547	3155	370	8129	259	10146	1013	6485	579	7182	9427	508	5923	2032	15329	1327	4717	6498	332	1923	388	2901	7685	936	17805	1513	354	21507	4901	5322	7401	13147	3200	8663	1312	13467	1284	1246	5860	618	537	178	7045	15619	476	242	573	217	155	5889	7057	887	1445	190	601	2667
GCF_900100875.1	NZ_FNKQ01000001	NZ_FNKQ01000001.1	Halopelagius longus strain CGMCC 1.12397; whole genome shotgun sequence.	189047	194808	375055	371565	1130475	0.17	0.17	0.33	0.33	0.66	0.9223	0.0197	0.9806	1.9243	599	596	1195	179149	147478	327417	330801	984845	0.18	0.15	0.33	0.34	0.66	0.8692	0.2116	0.8206	1.9026	541	579	580	1159	177028	145795	323778	327016	973617	0.18	0.15	0.33	0.34	0	0.67	0.869	0.2123	0.82	1.9018	529	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	1	85	45	137	152	419	0.2	0.11	0.33	0.36	0	0.69	0.8619	0.3596	0.7154	1.8706	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	13	9	22	292	329	520	563	1704	0.17	0.19	0.3	0.33	0	0.64	0.874	0.1509	0.8666	1.9329	1	2	3	137	107	156	175	575	0.23	0.19	0.29	0.29	0	0.59	0.8843	0.1935	0.8266	1.9697	5525	4832	1049	684	1890	20149	1059	1318	4815	3650	495	9625	446	11036	1211	7264	747	8040	10501	613	6517	2473	17166	1723	5351	7171	452	2120	539	3450	8173	1211	20074	1610	537	24280	5786	6134	8256	15138	3436	9974	1624	15598	1487	1661	6540	747	657	282	7491	17522	561	344	654	400	230	6958	8202	1145	1714	254	675	3273