GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	fr_chromo_N Frequency of 'N' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	fr_cds_N Frequency of 'N' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_000455365.1	NZ_HG315684	NZ_HG315684.1	Halopiger djelfimassiliensis strain IIH2; whole genome shotgun sequence.	207762	206106	382588	379963	8232	1184651	0.18	0.17	0.32	0.32	0.01	0.64	0.9272	0.0074	0.9926	1.9322	626	570	1196	185786	160282	330003	331713	1007784	0.19	0.16	0.32	0.33	0.65	0.8742	0.1808	0.8448	1.9183	520	610	548	1158	182094	157165	323533	325369	988161	0.19	0.16	0.32	0.33	0	0.65	0.8741	0.1818	0.844	1.9179	520	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	9	7	16	229	236	391	401	1257	0.18	0.19	0.31	0.32	0.63	0.8748	0.1263	0.886	1.9382	0	1	1	23	14	46	39	122	0.19	0.11	0.38	0.32	0	0.7	0.8407	0.3256	0.7283	1.8688	5267	3125	1098	826	3041	19584	1668	1108	3579	3723	689	9681	528	10649	1224	6444	360	5108	8913	1834	8483	3343	16535	6024	6244	9316	440	1792	1450	3880	12276	1855	20300	368	853	22094	5719	5330	7601	15470	4211	7552	2147	13706	840	2745	6780	442	1580	742	7493	15985	357	349	520	897	237	8564	9091	1686	1187	288	628	3538
GCF_000455365.1	NZ_HG315685	NZ_HG315685.1	Halopiger djelfimassiliensis strain IIH2; whole genome shotgun sequence.	191696	195775	346005	344777	4274	1082527	0.18	0.18	0.32	0.32	0	0.64	0.9284	0.0123	0.9878	1.9401	531	521	1052	175670	146517	297984	300205	920376	0.19	0.16	0.32	0.33	0.64	0.8767	0.1934	0.8349	1.9231	482	519	502	1021	173695	144893	294775	296981	910344	0.19	0.16	0.32	0.33	0	0.64	0.8766	0.193	0.8353	1.9227	483	NA	NA	NA	NA	NA	NA	NA	0	0	NA	1	1	92	49	150	159	450	0.2	0.11	0.33	0.35	0	0.69	0.8819	0.3341	0.738	1.8752	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	6	13	19	249	282	400	464	1395	0.18	0.2	0.29	0.33	0.62	0.8786	0.2001	0.828	1.9447	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	5146	3210	1089	868	2898	18189	1718	1181	3425	3282	616	9457	572	9927	1220	6445	353	4718	7995	1605	7636	3204	14711	5683	5821	8656	461	1640	1256	3450	11779	1692	18273	415	928	20698	5273	4786	6803	13483	4017	6808	2077	12146	714	2565	6147	436	1434	650	6975	13870	342	339	459	833	209	7505	8072	1842	1254	268	546	3377
GCF_000455365.1	NZ_HG315686	NZ_HG315686.1	Halopiger djelfimassiliensis strain IIH2; whole genome shotgun sequence.	167530	167783	290913	290143	7215	923584	0.18	0.18	0.31	0.31	0.01	0.63	0.9235	0.0021	0.9979	1.9435	441	419	860	152281	126838	249472	252993	781584	0.2	0.16	0.32	0.32	0.64	0.8784	0.1881	0.839	1.9278	622	429	407	836	149706	124353	245017	248399	767475	0.2	0.16	0.32	0.32	0	0.64	0.8783	0.1879	0.8392	1.9277	607	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	1	53	40	102	117	312	0.17	0.13	0.33	0.38	0	0.7	0.8663	0.2083	0.8133	1.8723	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	3	3	6	78	90	137	146	451	0.17	0.2	0.3	0.32	0.63	0.8867	0.1042	0.9034	1.9478	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	4102	2702	1081	883	2729	15145	1647	1122	2939	2825	771	8364	661	8525	1073	5323	405	3774	6686	1384	5856	2760	12169	5325	4915	7055	501	1434	1231	3360	9535	1726	14780	417	982	16974	4356	3829	5801	10679	3327	5319	1728	9831	642	2405	5224	402	1202	703	6053	10992	355	393	446	963	153	6344	7128	1543	1218	215	467	2946
GCF_000455365.1	NZ_HG315687	NZ_HG315687.1	Halopiger djelfimassiliensis strain IIH2; whole genome shotgun sequence.	65206	67537	127421	127128	1590	388882	0.17	0.17	0.33	0.33	0	0.65	0.9197	0.0187	0.9816	1.9254	178	215	393	60678	52479	111893	112285	337335	0.18	0.16	0.33	0.33	0.66	0.8721	0.1892	0.8383	1.9127	204	176	211	387	60233	52124	111181	111571	335109	0.18	0.16	0.33	0.33	0	0.66	0.872	0.1896	0.8379	1.9124	204	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	2	3	39	47	72	73	231	0.16	0.19	0.32	0.32	0.64	0.8519	0.3603	0.7105	1.8974	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1782	1090	352	215	923	6891	532	292	1205	1247	162	3037	172	3741	387	2073	88	1672	3074	569	2975	1089	5566	1838	2001	3247	111	564	406	1299	4133	550	7055	85	243	7828	1958	1967	2530	5352	1478	2794	635	4871	301	871	2392	139	602	216	2637	5360	95	116	162	274	76	2943	3077	568	366	102	209	1118
GCF_000455365.1	NZ_HG315688	NZ_HG315688.1	Halopiger djelfimassiliensis strain IIH2; whole genome shotgun sequence.	34596	33995	61676	61242	0	191509	0.18	0.18	0.32	0.32	0	0.64	0.9199	0.0123	0.9878	1.9411	88	116	204	31157	26358	52591	52922	163028	0.19	0.16	0.32	0.32	0.64	0.8757	0.1973	0.8336	1.9231	125	86	114	200	31094	26281	52486	52799	162660	0.19	0.16	0.32	0.32	0	0.65	0.8756	0.1975	0.8335	1.9225	125	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2	2	4	53	62	81	95	291	0.18	0.2	0.28	0.33	0.62	0.8606	0.1625	0.8591	1.9435	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	913	664	214	162	570	3107	313	192	617	608	103	1677	100	1778	201	1156	67	883	1489	284	1327	614	2665	982	1119	1462	65	332	241	643	2161	328	3284	63	152	3514	973	814	1220	2256	692	1226	438	2165	129	483	1064	69	212	116	1282	2448	68	61	82	165	42	1326	1550	322	207	56	102	602
GCF_000455365.1	NZ_HG315689	NZ_HG315689.1	Halopiger djelfimassiliensis strain IIH2; whole genome shotgun sequence.	1293	987	1431	1690	0	5401	0.24	0.18	0.26	0.31	0	0.58	0.9311	0.2172	0.805	1.9741	4	1	5	1167	862	1259	1509	4797	0.21	0.19	0.29	0.31	0.6	0.8989	0.2091	0.8133	1.9589	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	0	1	13	15	19	25	72	0.18	0.21	0.26	0.35	0.61	0.887	0.2078	0.8133	1.9544	3	0	3	1109	803	1172	1429	4513	0.23	0.17	0.29	0.31	0	0.6	0.9049	0.2402	0.7866	1.9545	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0