Assembly Assembly | Locus_ID Locus_ID | Version Version | Definition Sequence description | bp_chromo_A Total number of 'A' nucleotides in the whole sequence | bp_chromo_T Total number of 'T' nucleotides in the whole sequence | bp_chromo_C Total number of 'C' nucleotides in the whole sequence | bp_chromo_G Total number of 'G' nucleotides in the whole sequence | bp_chromo_N Total number of 'N' nucleotides in the whole sequence | bp_chromo_tot Total number of nucleotides in the whole sequence | fr_chromo_A Frequency of 'A' nucleotides in the whole sequence | fr_chromo_T Frequency of 'T' nucleotides in the whole sequence | fr_chromo_C Frequency of 'C' nucleotides in the whole sequence | fr_chromo_G Frequency of 'G' nucleotides in the whole sequence | fr_chromo_N Frequency of 'N' nucleotides in the whole sequence | GC_chromo Percentage of āGā + āCā nucleotides in the whole sequence | topo_entropy_chromo Topological entropy of the whole sequence | chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence | chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee | shannon_chromo Shannon entropy of the whole sequence | n_gene_pos Number of genes in the positive strand | n_gene_neg Number of genes in the negative strand | n_gene_tot Total number of genes in the chromosome | bp_gene_A Number of 'A' bases in total genes | bp_gene_T Number of 'T' bases in total genes | bp_gene_C Number of 'C' bases in total genes | bp_gene_G Number of 'G' bases in total genes | bp_gene_N Number of 'N' bases in total genes | bp_gene_tot Total number of bases in total genes | fr_gene_A Frequency of 'A' bases among total gene bases | fr_gene_T Frequency of 'T' bases among total gene bases | fr_gene_C Frequency of 'C' bases among total gene bases | fr_gene_G Frequency of 'G' bases among total gene bases | fr_gene_N Frequency of 'N' bases among total gene bases | GC_gene Percentage of 'G' and 'C' bases in total genes | topo_entropy_gene Topological entropy calculated from total gene sequences | chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes | chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes | shannon_gene Shannon entropy score for total genes | bp_gene_overlap_tot Number of bases overlapping between genes on two strands | n_cds_pos Number of CDS in the positive strand | n_cds_neg Number of CDS in the negative strand | n_cds_tot Total number of CDS in the chromosome | bp_cds_A Number of 'A' bases in total CDS (coding sequences) | bp_cds_T Number of 'T' bases in total CDS | bp_cds_C Number of 'C' bases in total CDS | bp_cds_G Number of 'G' bases in total CDS | bp_cds_N Number of 'N' bases in total CDS | bp_cds_tot Total bases in total CDS | fr_cds_A Frequency of 'A' bases among total CDS bases | fr_cds_T Frequency of 'T' bases among total CDS bases | fr_cds_C Frequency of 'C' bases among total CDS bases | fr_cds_G Frequency of 'G' bases among total CDS bases | fr_cds_N Frequency of 'N' bases among total CDS bases | GC_cds Percentage of 'G' and 'C' bases in total CDS | topo_entropy_cds Topological entropy calculated from total CDS sequences | chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS | chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS | shannon_cds Shannon entropy score for total CDS | bp_cds_overlap_tot Number of bases overlapping between CDS on two strands | bp_cds_intron_A Number of 'A' bases in total introns between CDS | bp_cds_intron_T Number of 'T' bases in total introns between CDS | bp_cds_intron_C Number of 'C' bases in total introns between CDS | bp_cds_intron_G Number of 'G' bases in total introns between CDS | bp_cds_intron_N Number of 'N' bases in total introns between CDS | bp_cds_intron_tot Total bases in total introns between CDS | fr_cds_intron_A Frequency of 'A' bases in total introns between CDS | fr_cds_intron_T Frequency of 'T' bases in total introns between CDS | fr_cds_intron_C Frequency of 'C' bases in total introns between CDS | fr_cds_intron_G Frequency of 'G' bases in total introns between CDS | fr_cds_intron_N Frequency of 'N' bases in total introns between CDS | GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS | topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS | chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS | chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS | shannon_cds_intron Shannon entropy score for total introns between CDS | bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands | n_ncRNA_pos Number of ncRNA in the positive strand | n_ncRNA_neg Number of ncRNA in the negative strand | n_ncRNA_tot Total number of ncRNA in the chromosome | bp_ncRNA_A Number of 'A' bases in total ncRNA | bp_ncRNA_T bp_ncRNA_T | bp_ncRNA_C Number of 'C' bases in total ncRNA | bp_ncRNA_G Number of 'G' bases in total ncRNA | bp_ncRNA_N Number of 'N' bases in total ncRNA | bp_ncRNA_tot Total bases in total ncRNA | fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases | fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases | fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases | fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases | fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases | GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA | topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences | chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA | chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA | shannon_ncRNA Shannon entropy score for total ncRNA | bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands | bp_nc_intron_A Number of 'A' bases in total introns between ncRNA | bp_nc_intron_T Number of 'T' bases in total introns between ncRNA | bp_nc_intron_C Number of 'C' bases in total introns between ncRNA | bp_nc_intron_G Number of 'G' bases in total introns between ncRNA | bp_nc_intron_N Number of 'N' bases in total introns between ncRNA | bp_nc_intron_tot Total bases in total introns between ncRNA | fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA | fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA | fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA | fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA | fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA | GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA | topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA | chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA | chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA | shannon_nc_intron Shannon entropy score for total introns between ncRNA | bp_nc_intron_overlap_tot Number of bases overlapping between introns between ncRNA on two strands | n_tRNA_pos Number of tRNA in the positive strand | n_tRNA_neg Number of tRNA in the negative strand | n_tRNA_tot Total number of tRNA in the chromosome | bp_tRNA_A Number of 'A' bases in total tRNA | bp_tRNA_T Number of 'T' bases in total tRNA | bp_tRNA_C Number of 'C' bases in total tRNA | bp_tRNA_G Number of 'G' bases in total tRNA | bp_tRNA_N Number of 'N' bases in total tRNA | bp_tRNA_tot Total bases in total tRNA | fr_tRNA_A Frequency of 'A' bases among total tRNA bases | fr_tRNA_T Frequency of 'T' bases among total tRNA bases | fr_tRNA_C Frequency of 'C' bases among total tRNA bases | fr_tRNA_G Frequency of 'G' bases among total tRNA bases | fr_tRNA_N Frequency of 'N' bases among total tRNA bases | GC_tRNA Percentage of 'G' and 'C' bases in total tRNA | topo_entropy_tRNA Topological entropy calculated from total tRNA sequences | chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA | chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA | shannon_tRNA Shannon entropy score for total tRNA | bp_tRNA_overlap_tot Number of bases overlapping between tRNA on two strands | n_rRNA_pos Number of rRNA in the positive strand | n_rRNA_neg Number of rRNA in the negative strand | n_rRNA_tot Total number of rRNA in the chromosome | bp_rRNA_A Number of 'A' bases in total rRNA | bp_rRNA_T Number of 'T' bases in total rRNA | bp_rRNA_C Number of 'C' bases in total rRNA | bp_rRNA_G Number of 'G' bases in total rRNA | bp_rRNA_N Number of 'N' bases in total rRNA | bp_rRNA_tot Total bases in total rRNA | fr_rRNA_A Frequency of 'A' bases among total rRNA bases | fr_rRNA_T Frequency of 'T' bases among total rRNA bases | fr_rRNA_C Frequency of 'C' bases among total rRNA bases | fr_rRNA_G Frequency of 'G' bases among total rRNA bases | fr_rRNA_N Frequency of 'N' bases among total rRNA bases | GC_rRNA Percentage of 'G' and 'C' bases in total rRNA | topo_entropy_rRNA Topological entropy calculated from total rRNA sequences | chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA | chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA | shannon_rRNA Shannon entropy score for total rRNA | bp_rRNA_overlap_tot Number of bases overlapping between rRNA on two strands | ATG ATG | AAG AAG | GTA GTA | ACT ACT | GCA GCA | GAG GAG | GCT GCT | ATT ATT | TCC TCC | TGG TGG | AAT AAT | GAA GAA | TCA TCA | ACG ACG | AGT AGT | AAC AAC | TCT TCT | GTG GTG | TTC TTC | TTT TTT | CTG CTG | GGT GGT | CTC CTC | GAT GAT | CAG CAG | ACC ACC | CTA CTA | TTG TTG | TAT TAT | GGA GGA | ATC ATC | CTT CTT | GTC GTC | ATA ATA | ACA ACA | GAC GAC | CAC CAC | CCC CCC | TAC TAC | GCC GCC | AGC AGC | CGC CGC | AAA AAA | GGC GGC | TGC TGC | GTT GTT | GGG GGG | AGA AGA | TGT TGT | CAT CAT | TCG TCG | GCG GCG | TTA TTA | CCT CCT | AGG AGG | CCA CCA | TAG TAG | CGG CGG | CCG CCG | CGT CGT | CAA CAA | TAA TAA | TGA TGA | CGA CGA |
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GCF_023703775.1 | NZ_CP098514 | NZ_CP098514.1 | Haloplanus sp. GDY1 chromosome; complete genome. | 459238 | 462190 | 1050765 | 1038182 | 0 | 3010375 | 0.15 | 0.15 | 0.35 | 0.34 | 0 | 0.69 | 0.9192 | 0.0092 | 0.9908 | 1.8886 | 1524 | 1678 | 3202 | 434811 | 385604 | 956291 | 947342 | 0 | 2724048 | 0.16 | 0.14 | 0.35 | 0.35 | 0 | 0.69 | 0.8611 | 0.1944 | 0.834 | 1.871 | 2339 | 1489 | 1625 | 3114 | 428556 | 379837 | 944602 | 935230 | 0 | 2688225 | 0.16 | 0.14 | 0.35 | 0.35 | 0 | 0.7 | 0.8607 | 0.1948 | 0.8338 | 1.8698 | 2281 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 2 | 2 | 144 | 94 | 260 | 290 | 0 | 788 | 0.18 | 0.12 | 0.33 | 0.37 | 0 | 0.7 | 0.8641 | 0.2356 | 0.8017 | 1.8664 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 21 | 28 | 49 | 656 | 720 | 1118 | 1224 | 0 | 3718 | 0.18 | 0.19 | 0.3 | 0.33 | 0 | 0.63 | 0.8715 | 0.1769 | 0.8482 | 1.9358 | 0 | 3 | 3 | 6 | 2117 | 1537 | 2467 | 2895 | 0 | 9016 | 0.22 | 0.16 | 0.3 | 0.32 | 0 | 0.62 | 0.8984 | 0.2159 | 0.8088 | 1.9457 | 0 | 14177 | 10540 | 1254 | 1163 | 3325 | 55647 | 2195 | 1434 | 10587 | 9751 | 894 | 14740 | 895 | 28437 | 2172 | 16906 | 599 | 24534 | 26259 | 1438 | 28203 | 5652 | 48027 | 6123 | 15475 | 25973 | 692 | 2475 | 1823 | 5775 | 27609 | 1487 | 59127 | 677 | 1091 | 71888 | 15882 | 18911 | 20827 | 53536 | 11957 | 26981 | 2680 | 47601 | 2830 | 2660 | 22159 | 730 | 3352 | 851 | 19266 | 48480 | 314 | 615 | 1310 | 1457 | 929 | 27076 | 23072 | 3482 | 1573 | 325 | 1860 | 6315 |
GCF_023703775.1 | NZ_CP098515 | NZ_CP098515.1 | Haloplanus sp. GDY1 plasmid unnamed1; complete sequence. | 32183 | 33567 | 44289 | 44528 | 0 | 154567 | 0.21 | 0.22 | 0.29 | 0.29 | 0 | 0.57 | 0.9374 | 0.0237 | 0.9767 | 1.9837 | 61 | 64 | 125 | 24778 | 21704 | 32736 | 33036 | 0 | 112254 | 0.22 | 0.19 | 0.29 | 0.3 | 0 | 0.58 | 0.8967 | 0.1709 | 0.8498 | 1.9604 | 128 | 59 | 61 | 120 | 24331 | 21220 | 31998 | 32320 | 0 | 109869 | 0.23 | 0.19 | 0.29 | 0.3 | 0 | 0.58 | 0.8968 | 0.1717 | 0.8491 | 1.9604 | 128 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 511 | 462 | 242 | 369 | 613 | 1715 | 547 | 483 | 380 | 429 | 355 | 1103 | 309 | 1044 | 357 | 729 | 230 | 709 | 885 | 282 | 676 | 567 | 1520 | 1082 | 885 | 830 | 208 | 280 | 350 | 582 | 1151 | 400 | 1483 | 179 | 388 | 1840 | 577 | 426 | 759 | 1078 | 449 | 612 | 355 | 943 | 122 | 498 | 645 | 126 | 136 | 202 | 719 | 1130 | 158 | 187 | 92 | 349 | 35 | 701 | 808 | 351 | 378 | 22 | 63 | 527 |
GCF_023703775.1 | NZ_CP098516 | NZ_CP098516.1 | Haloplanus sp. GDY1 plasmid unnamed2; complete sequence. | 34605 | 33955 | 50013 | 45242 | 0 | 163815 | 0.21 | 0.21 | 0.31 | 0.28 | 0 | 0.58 | 0.9445 | 0.0596 | 0.9429 | 1.9797 | 86 | 62 | 148 | 31408 | 25076 | 40712 | 39166 | 0 | 136362 | 0.23 | 0.18 | 0.3 | 0.29 | 0 | 0.59 | 0.8963 | 0.2096 | 0.8191 | 1.9597 | 147 | 83 | 61 | 144 | 30661 | 24430 | 39764 | 38216 | 0 | 133071 | 0.23 | 0.18 | 0.3 | 0.29 | 0 | 0.59 | 0.8963 | 0.2114 | 0.8177 | 1.9594 | 131 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 659 | 727 | 251 | 386 | 725 | 2252 | 660 | 523 | 545 | 568 | 396 | 1623 | 338 | 1099 | 384 | 922 | 305 | 635 | 1143 | 221 | 755 | 553 | 1996 | 1414 | 1127 | 1043 | 237 | 314 | 376 | 561 | 1405 | 451 | 1585 | 166 | 438 | 2585 | 816 | 713 | 955 | 1355 | 547 | 871 | 461 | 1066 | 175 | 502 | 754 | 129 | 183 | 256 | 740 | 1230 | 135 | 254 | 148 | 404 | 25 | 755 | 776 | 446 | 498 | 34 | 85 | 676 |
GCF_023703775.1 | NZ_CP098517 | NZ_CP098517.1 | Haloplanus sp. GDY1 plasmid unnamed3; complete sequence. | 23758 | 21414 | 31024 | 31032 | 0 | 107228 | 0.22 | 0.2 | 0.29 | 0.29 | 0 | 0.58 | 0.9395 | 0.052 | 0.9505 | 1.9812 | 67 | 19 | 86 | 20893 | 16538 | 26607 | 26499 | 0 | 90537 | 0.23 | 0.18 | 0.3 | 0.3 | 0 | 0.59 | 0.8977 | 0.191 | 0.8342 | 1.9571 | 63 | 65 | 19 | 84 | 20289 | 16081 | 25887 | 25739 | 0 | 87996 | 0.23 | 0.18 | 0.3 | 0.3 | 0 | 0.59 | 0.8973 | 0.1915 | 0.8338 | 1.9567 | 63 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 401 | 466 | 167 | 243 | 426 | 1709 | 389 | 325 | 317 | 388 | 284 | 1099 | 242 | 713 | 224 | 653 | 141 | 402 | 840 | 169 | 613 | 325 | 1212 | 759 | 789 | 578 | 153 | 203 | 239 | 349 | 994 | 297 | 1141 | 86 | 307 | 1764 | 491 | 330 | 712 | 826 | 340 | 579 | 326 | 758 | 123 | 332 | 471 | 70 | 129 | 171 | 496 | 795 | 83 | 158 | 73 | 303 | 18 | 654 | 594 | 312 | 308 | 26 | 40 | 407 |