Assembly Assembly | Locus_ID Locus_ID | Version Version | Definition Sequence description | bp_chromo_A Total number of 'A' nucleotides in the whole sequence | bp_chromo_T Total number of 'T' nucleotides in the whole sequence | bp_chromo_C Total number of 'C' nucleotides in the whole sequence | bp_chromo_G Total number of 'G' nucleotides in the whole sequence | bp_chromo_N Total number of 'N' nucleotides in the whole sequence | bp_chromo_tot Total number of nucleotides in the whole sequence | fr_chromo_A Frequency of 'A' nucleotides in the whole sequence | fr_chromo_T Frequency of 'T' nucleotides in the whole sequence | fr_chromo_C Frequency of 'C' nucleotides in the whole sequence | fr_chromo_G Frequency of 'G' nucleotides in the whole sequence | fr_chromo_N Frequency of 'N' nucleotides in the whole sequence | GC_chromo Percentage of āGā + āCā nucleotides in the whole sequence | topo_entropy_chromo Topological entropy of the whole sequence | chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence | chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee | shannon_chromo Shannon entropy of the whole sequence | n_gene_pos Number of genes in the positive strand | n_gene_neg Number of genes in the negative strand | n_gene_tot Total number of genes in the chromosome | bp_gene_A Number of 'A' bases in total genes | bp_gene_T Number of 'T' bases in total genes | bp_gene_C Number of 'C' bases in total genes | bp_gene_G Number of 'G' bases in total genes | bp_gene_N Number of 'N' bases in total genes | bp_gene_tot Total number of bases in total genes | fr_gene_A Frequency of 'A' bases among total gene bases | fr_gene_T Frequency of 'T' bases among total gene bases | fr_gene_C Frequency of 'C' bases among total gene bases | fr_gene_G Frequency of 'G' bases among total gene bases | fr_gene_N Frequency of 'N' bases among total gene bases | GC_gene Percentage of 'G' and 'C' bases in total genes | topo_entropy_gene Topological entropy calculated from total gene sequences | chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes | chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes | shannon_gene Shannon entropy score for total genes | bp_gene_overlap_tot Number of bases overlapping between genes on two strands | n_cds_pos Number of CDS in the positive strand | n_cds_neg Number of CDS in the negative strand | n_cds_tot Total number of CDS in the chromosome | bp_cds_A Number of 'A' bases in total CDS (coding sequences) | bp_cds_T Number of 'T' bases in total CDS | bp_cds_C Number of 'C' bases in total CDS | bp_cds_G Number of 'G' bases in total CDS | bp_cds_N Number of 'N' bases in total CDS | bp_cds_tot Total bases in total CDS | fr_cds_A Frequency of 'A' bases among total CDS bases | fr_cds_T Frequency of 'T' bases among total CDS bases | fr_cds_C Frequency of 'C' bases among total CDS bases | fr_cds_G Frequency of 'G' bases among total CDS bases | fr_cds_N Frequency of 'N' bases among total CDS bases | GC_cds Percentage of 'G' and 'C' bases in total CDS | topo_entropy_cds Topological entropy calculated from total CDS sequences | chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS | chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS | shannon_cds Shannon entropy score for total CDS | bp_cds_overlap_tot Number of bases overlapping between CDS on two strands | bp_cds_intron_A Number of 'A' bases in total introns between CDS | bp_cds_intron_T Number of 'T' bases in total introns between CDS | bp_cds_intron_C Number of 'C' bases in total introns between CDS | bp_cds_intron_G Number of 'G' bases in total introns between CDS | bp_cds_intron_N Number of 'N' bases in total introns between CDS | bp_cds_intron_tot Total bases in total introns between CDS | fr_cds_intron_A Frequency of 'A' bases in total introns between CDS | fr_cds_intron_T Frequency of 'T' bases in total introns between CDS | fr_cds_intron_C Frequency of 'C' bases in total introns between CDS | fr_cds_intron_G Frequency of 'G' bases in total introns between CDS | fr_cds_intron_N Frequency of 'N' bases in total introns between CDS | GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS | topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS | chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS | chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS | shannon_cds_intron Shannon entropy score for total introns between CDS | bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands | n_ncRNA_pos Number of ncRNA in the positive strand | n_ncRNA_neg Number of ncRNA in the negative strand | n_ncRNA_tot Total number of ncRNA in the chromosome | bp_ncRNA_A Number of 'A' bases in total ncRNA | bp_ncRNA_T bp_ncRNA_T | bp_ncRNA_C Number of 'C' bases in total ncRNA | bp_ncRNA_G Number of 'G' bases in total ncRNA | bp_ncRNA_N Number of 'N' bases in total ncRNA | bp_ncRNA_tot Total bases in total ncRNA | fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases | fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases | fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases | fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases | fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases | GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA | topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences | chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA | chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA | shannon_ncRNA Shannon entropy score for total ncRNA | bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands | bp_nc_intron_A Number of 'A' bases in total introns between ncRNA | bp_nc_intron_T Number of 'T' bases in total introns between ncRNA | bp_nc_intron_C Number of 'C' bases in total introns between ncRNA | bp_nc_intron_G Number of 'G' bases in total introns between ncRNA | bp_nc_intron_N Number of 'N' bases in total introns between ncRNA | bp_nc_intron_tot Total bases in total introns between ncRNA | fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA | fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA | fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA | fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA | fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA | GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA | topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA | chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA | chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA | shannon_nc_intron Shannon entropy score for total introns between ncRNA | bp_nc_intron_overlap_tot Number of bases overlapping between introns between ncRNA on two strands | n_tRNA_pos Number of tRNA in the positive strand | n_tRNA_neg Number of tRNA in the negative strand | n_tRNA_tot Total number of tRNA in the chromosome | bp_tRNA_A Number of 'A' bases in total tRNA | bp_tRNA_T Number of 'T' bases in total tRNA | bp_tRNA_C Number of 'C' bases in total tRNA | bp_tRNA_G Number of 'G' bases in total tRNA | bp_tRNA_N Number of 'N' bases in total tRNA | bp_tRNA_tot Total bases in total tRNA | fr_tRNA_A Frequency of 'A' bases among total tRNA bases | fr_tRNA_T Frequency of 'T' bases among total tRNA bases | fr_tRNA_C Frequency of 'C' bases among total tRNA bases | fr_tRNA_G Frequency of 'G' bases among total tRNA bases | fr_tRNA_N Frequency of 'N' bases among total tRNA bases | GC_tRNA Percentage of 'G' and 'C' bases in total tRNA | topo_entropy_tRNA Topological entropy calculated from total tRNA sequences | chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA | chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA | shannon_tRNA Shannon entropy score for total tRNA | bp_tRNA_overlap_tot Number of bases overlapping between tRNA on two strands | n_rRNA_pos Number of rRNA in the positive strand | n_rRNA_neg Number of rRNA in the negative strand | n_rRNA_tot Total number of rRNA in the chromosome | bp_rRNA_A Number of 'A' bases in total rRNA | bp_rRNA_T Number of 'T' bases in total rRNA | bp_rRNA_C Number of 'C' bases in total rRNA | bp_rRNA_G Number of 'G' bases in total rRNA | bp_rRNA_N Number of 'N' bases in total rRNA | bp_rRNA_tot Total bases in total rRNA | fr_rRNA_A Frequency of 'A' bases among total rRNA bases | fr_rRNA_T Frequency of 'T' bases among total rRNA bases | fr_rRNA_C Frequency of 'C' bases among total rRNA bases | fr_rRNA_G Frequency of 'G' bases among total rRNA bases | fr_rRNA_N Frequency of 'N' bases among total rRNA bases | GC_rRNA Percentage of 'G' and 'C' bases in total rRNA | topo_entropy_rRNA Topological entropy calculated from total rRNA sequences | chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA | chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA | shannon_rRNA Shannon entropy score for total rRNA | bp_rRNA_overlap_tot Number of bases overlapping between rRNA on two strands | ATG ATG | AAG AAG | GTA GTA | ACT ACT | GCA GCA | GAG GAG | GCT GCT | ATT ATT | TCC TCC | TGG TGG | AAT AAT | GAA GAA | TCA TCA | ACG ACG | AGT AGT | AAC AAC | TCT TCT | GTG GTG | TTC TTC | TTT TTT | CTG CTG | GGT GGT | CTC CTC | GAT GAT | CAG CAG | ACC ACC | CTA CTA | TTG TTG | TAT TAT | GGA GGA | ATC ATC | CTT CTT | GTC GTC | ATA ATA | ACA ACA | GAC GAC | CAC CAC | CCC CCC | TAC TAC | GCC GCC | AGC AGC | CGC CGC | AAA AAA | GGC GGC | TGC TGC | GTT GTT | GGG GGG | AGA AGA | TGT TGT | CAT CAT | TCG TCG | GCG GCG | TTA TTA | CCT CCT | AGG AGG | CCA CCA | TAG TAG | CGG CGG | CCG CCG | CGT CGT | CAA CAA | TAA TAA | TGA TGA | CGA CGA |
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GCF_023276355.1 | NZ_JALLPL010000001 | NZ_JALLPL010000001.1 | Haloplanus sp. XH21 assembly_1; whole genome shotgun sequence. | 433342 | 432650 | 832874 | 833408 | 0 | 2532274 | 0.17 | 0.17 | 0.33 | 0.33 | 0 | 0.66 | 0.9306 | 0.0011 | 0.9989 | 1.9267 | 1233 | 1327 | 2560 | 389599 | 336408 | 731039 | 704965 | 0 | 2162011 | 0.18 | 0.16 | 0.33 | 0.33 | 0 | 0.66 | 0.8739 | 0.1975 | 0.831 | 1.9057 | 1606 | 1149 | 1204 | 2353 | 364468 | 311054 | 680520 | 656805 | 0 | 2012847 | 0.18 | 0.16 | 0.33 | 0.33 | 0 | 0.66 | 0.8735 | 0.199 | 0.83 | 1.9052 | 1443 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 1 | 1 | 2 | 130 | 95 | 227 | 256 | 0 | 708 | 0.18 | 0.13 | 0.32 | 0.36 | 0 | 0.69 | 0.8778 | 0.194 | 0.8338 | 1.8871 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 20 | 43 | 63 | 864 | 929 | 1464 | 1606 | 0 | 4863 | 0.18 | 0.19 | 0.3 | 0.33 | 0 | 0.63 | 0.8708 | 0.1667 | 0.8529 | 1.9376 | 0 | 3 | 3 | 6 | 2194 | 1616 | 2392 | 2838 | 0 | 9040 | 0.22 | 0.17 | 0.29 | 0.32 | 0 | 0.61 | 0.901 | 0.2103 | 0.8121 | 1.954 | 0 | 11682 | 7711 | 1628 | 1914 | 4548 | 36468 | 3590 | 2416 | 7430 | 7287 | 1617 | 17807 | 1359 | 21607 | 2642 | 13447 | 1076 | 16134 | 19498 | 2082 | 17943 | 6416 | 34884 | 9281 | 14304 | 18048 | 1228 | 2808 | 2899 | 5311 | 23929 | 2284 | 38959 | 941 | 1805 | 49829 | 11890 | 12731 | 14943 | 34748 | 8890 | 20287 | 4334 | 32595 | 2067 | 3668 | 11785 | 734 | 2724 | 1834 | 13800 | 32121 | 605 | 1051 | 641 | 2118 | 632 | 14516 | 15627 | 3940 | 2365 | 475 | 1246 | 5770 |
GCF_023276355.1 | NZ_JALLPL010000002 | NZ_JALLPL010000002.1 | Haloplanus sp. XH21 assembly_2; whole genome shotgun sequence. | 66833 | 64631 | 86491 | 87446 | 0 | 305401 | 0.22 | 0.21 | 0.28 | 0.29 | 0 | 0.57 | 0.9479 | 0.0222 | 0.9781 | 1.9859 | 178 | 108 | 286 | 51269 | 44439 | 65556 | 67108 | 0 | 228372 | 0.22 | 0.2 | 0.29 | 0.29 | 0 | 0.58 | 0.896 | 0.2013 | 0.8271 | 1.9638 | 303 | 168 | 96 | 264 | 48426 | 41827 | 61870 | 63271 | 0 | 215394 | 0.23 | 0.19 | 0.29 | 0.29 | 0 | 0.58 | 0.896 | 0.1998 | 0.8282 | 1.9638 | 303 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 1187 | 1014 | 470 | 614 | 1270 | 3687 | 1002 | 886 | 751 | 996 | 628 | 2524 | 574 | 1809 | 630 | 1364 | 369 | 1250 | 2047 | 491 | 1423 | 1049 | 3123 | 2055 | 1708 | 1425 | 372 | 544 | 716 | 1006 | 2413 | 793 | 2761 | 316 | 753 | 3814 | 1172 | 814 | 1495 | 2006 | 813 | 1202 | 768 | 1745 | 239 | 1001 | 1280 | 217 | 374 | 458 | 1248 | 2129 | 231 | 377 | 174 | 710 | 73 | 1334 | 1436 | 737 | 728 | 69 | 122 | 1012 |
GCF_023276355.1 | NZ_JALLPL010000003 | NZ_JALLPL010000003.1 | Haloplanus sp. XH21 assembly_3; whole genome shotgun sequence. | 22005 | 22101 | 29744 | 29990 | 0 | 103840 | 0.21 | 0.21 | 0.29 | 0.29 | 0 | 0.58 | 0.9437 | 0.0063 | 0.9937 | 1.9836 | 50 | 58 | 108 | 16549 | 14572 | 22228 | 22323 | 0 | 75672 | 0.22 | 0.19 | 0.29 | 0.3 | 0 | 0.59 | 0.8951 | 0.1788 | 0.8439 | 1.9602 | 29 | 49 | 46 | 95 | 16023 | 14093 | 21178 | 21306 | 0 | 72600 | 0.22 | 0.19 | 0.29 | 0.3 | 0 | 0.58 | 0.8972 | 0.1791 | 0.8436 | 1.9664 | 29 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 9 | 9 | 108 | 119 | 214 | 237 | 0 | 678 | 0.16 | 0.17 | 0.32 | 0.35 | 0 | 0.66 | 0.8763 | 0.1893 | 0.8355 | 1.9092 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 404 | 286 | 157 | 198 | 444 | 1211 | 336 | 303 | 222 | 329 | 186 | 833 | 157 | 619 | 226 | 414 | 110 | 414 | 678 | 143 | 468 | 364 | 1150 | 719 | 581 | 475 | 118 | 174 | 255 | 314 | 864 | 276 | 995 | 99 | 255 | 1345 | 390 | 284 | 526 | 691 | 288 | 391 | 217 | 638 | 81 | 335 | 434 | 69 | 106 | 166 | 390 | 725 | 77 | 117 | 42 | 258 | 20 | 427 | 508 | 255 | 257 | 31 | 44 | 311 |