GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	fr_cds_N Frequency of 'N' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_900107665.1	NZ_FNQT01000009	NZ_FNQT01000009.1	Haloplanus vescus strain CGMCC 1.8712; whole genome shotgun sequence.	482	342	527	609	0	1960	0.25	0.17	0.27	0.31	0.58	0.9222	0.2421	0.7874	1.9707	1	0	1	482	342	527	609	1960	0.25	0.17	0.27	0.31	0.58	0.9222	0.2421	0.7874	1.9707	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	0	1	482	342	527	609	1960	0.25	0.17	0.27	0.31	0	0.58	0.9222	0.2421	0.7874	1.9707	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GCF_900107665.1	NZ_FNQT01000007	NZ_FNQT01000007.1	Haloplanus vescus strain CGMCC 1.8712; whole genome shotgun sequence.	12635	13021	23114	22570	0	71340	0.18	0.18	0.32	0.32	0.64	0.924	0.027	0.9734	1.9423	36	34	70	11196	10491	20839	19698	62224	0.18	0.17	0.33	0.32	0.65	0.8799	0.1767	0.8454	1.9167	22	31	33	64	10917	10258	20469	19331	60975	0.18	0.17	0.33	0.32	0	0.65	0.8802	0.1793	0.8431	1.9137	22	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2	1	3	39	40	68	72	219	0.18	0.18	0.31	0.33	0	0.64	0.8723	0.1114	0.8976	1.9379	2	0	2	49	32	67	64	212	0.24	0.15	0.31	0.3	0	0.61	0.8682	0.232	0.8075	1.945	300	189	93	84	229	980	165	177	204	224	70	494	69	630	110	353	53	537	651	95	508	223	1136	230	353	449	66	104	97	166	624	116	1193	68	81	1529	365	374	439	1024	259	643	124	855	49	142	373	28	64	61	382	927	44	45	22	92	17	375	456	133	100	12	35	235
GCF_900107665.1	NZ_FNQT01000006	NZ_FNQT01000006.1	Haloplanus vescus strain CGMCC 1.8712; whole genome shotgun sequence.	16225	16883	33072	31495	0	97675	0.17	0.17	0.34	0.32	0.66	0.9175	0.0443	0.9567	1.9234	60	50	110	16255	13871	31196	29154	90476	0.18	0.16	0.34	0.32	0.66	0.8692	0.207	0.8227	1.8997	56	57	48	105	15839	13555	30546	28440	88380	0.18	0.15	0.34	0.32	0	0.66	0.869	0.2065	0.8231	1.8983	56	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	2	2	23	29	41	52	145	0.16	0.2	0.28	0.36	0	0.64	0.8809	0.2779	0.7731	1.9198	1	0	1	40	36	40	37	153	0.26	0.24	0.26	0.24	0	0.5	0.8747	0.0916	0.9125	1.9984	480	371	62	89	185	1582	161	208	328	326	80	828	56	887	122	511	66	724	805	61	625	258	1726	196	569	788	75	140	112	176	868	104	1864	74	73	2453	546	641	674	1580	376	1058	178	1507	122	121	508	32	146	50	650	1318	28	39	23	76	38	441	604	158	116	19	48	330
GCF_900107665.1	NZ_FNQT01000010	NZ_FNQT01000010.1	Haloplanus vescus strain CGMCC 1.8712; whole genome shotgun sequence.	372	289	417	495	0	1573	0.24	0.18	0.27	0.31	0.58	0.9243	0.2111	0.8097	1.9737	1	0	1	348	277	380	467	1472	0.24	0.19	0.26	0.32	0.58	0.9241	0.2163	0.8048	1.9752	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	0	1	348	277	380	467	1472	0.24	0.19	0.26	0.32	0	0.58	0.9241	0.2163	0.8048	1.9752	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GCF_900107665.1	NZ_FNQT01000005	NZ_FNQT01000005.1	Haloplanus vescus strain CGMCC 1.8712; whole genome shotgun sequence.	27785	26120	37238	37906	0	129049	0.22	0.2	0.29	0.29	0.58	0.9423	0.0398	0.9612	1.9801	90	43	133	23403	20040	31096	32117	106656	0.22	0.19	0.29	0.3	0.59	0.8951	0.1805	0.843	1.9638	171	89	40	129	22722	19493	30113	31136	103464	0.22	0.19	0.29	0.3	0	0.59	0.8953	0.1829	0.841	1.9638	119	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	1	1	15	15	24	21	75	0.2	0.2	0.32	0.28	0	0.6	0.8747	0.0667	0.9375	1.969	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	641	498	227	269	578	1853	439	348	338	472	326	1168	228	958	311	645	155	638	1003	213	705	479	1591	984	869	709	143	225	302	470	1176	324	1442	78	323	1874	557	425	787	971	424	549	297	942	114	404	680	72	155	216	572	1029	95	170	70	309	25	712	716	357	311	39	65	423
GCF_900107665.1	NZ_FNQT01000004	NZ_FNQT01000004.1	Haloplanus vescus strain CGMCC 1.8712; whole genome shotgun sequence.	40754	43464	58750	58124	0	201092	0.2	0.22	0.29	0.29	0.58	0.9424	0.0375	0.9635	1.9806	55	124	179	40006	32529	51067	51798	175400	0.23	0.18	0.3	0.3	0.6	0.8943	0.1989	0.8277	1.9569	158	55	122	177	39780	32337	50748	51447	174312	0.23	0.18	0.3	0.3	0	0.6	0.8943	0.1993	0.8274	1.9568	158	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	812	907	313	457	947	3422	750	697	609	819	497	2082	481	1504	480	1127	321	901	1729	293	1229	743	2404	1702	1506	1239	301	438	490	622	1925	567	2261	213	590	3346	999	689	1369	1550	719	1008	537	1464	212	609	987	195	273	312	971	1654	213	276	147	555	56	1180	1195	570	648	45	76	871
GCF_900107665.1	NZ_FNQT01000003	NZ_FNQT01000003.1	Haloplanus vescus strain CGMCC 1.8712; whole genome shotgun sequence.	60578	59497	122939	119129	0	362143	0.17	0.16	0.34	0.33	0.67	0.9155	0.0247	0.9756	1.9164	211	174	385	57468	48477	113339	107788	327072	0.18	0.15	0.34	0.33	0.67	0.8702	0.2168	0.8154	1.8976	180	202	169	371	56943	47953	112312	106849	324057	0.18	0.15	0.34	0.33	0	0.67	0.8699	0.217	0.8154	1.8961	179	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	7	2	9	120	135	191	216	662	0.18	0.21	0.29	0.32	0	0.61	0.8658	0.1855	0.834	1.9517	0	1	1	42	39	45	38	164	0.26	0.24	0.27	0.23	0	0.51	0.8747	0.1214	0.8865	1.9968	1988	1353	224	267	757	6254	513	635	1203	1126	204	2644	144	3657	342	2049	157	2746	3199	181	2517	970	6087	532	2098	2804	131	518	321	562	3229	304	6748	187	263	9425	2033	2179	2368	5854	1337	3836	527	5433	341	421	1976	56	416	135	2341	5398	56	90	40	250	98	1820	2428	552	366	102	171	1056
GCF_900107665.1	NZ_FNQT01000002	NZ_FNQT01000002.1	Haloplanus vescus strain CGMCC 1.8712; whole genome shotgun sequence.	70485	75581	150576	144905	70	441617	0.16	0.17	0.34	0.33	0.67	0.9179	0.0541	0.9475	1.9152	200	270	470	71805	61002	141927	133787	408521	0.18	0.15	0.34	0.33	0.67	0.8694	0.2094	0.822	1.8992	491	190	264	454	70888	60207	140255	132087	403437	0.18	0.15	0.34	0.33	0	0.67	0.8692	0.2118	0.8203	1.8979	487	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	6	5	11	153	167	247	260	827	0.18	0.2	0.3	0.32	0	0.62	0.8631	0.1738	0.8497	1.9391	1	0	1	25	18	41	38	122	0.2	0.15	0.34	0.31	0	0.65	0.8617	0.2008	0.8234	1.9288	2204	1594	263	373	1004	7262	590	769	1503	1487	242	3338	192	4714	557	2644	202	3401	4179	250	3064	1211	7723	703	2642	3490	205	619	404	798	3893	400	8588	219	343	11256	2471	2753	3045	7110	1808	4483	658	7109	347	509	2465	90	511	201	2910	6451	76	121	89	368	121	2249	3174	623	552	103	230	1526
GCF_900107665.1	NZ_FNQT01000008	NZ_FNQT01000008.1	Haloplanus vescus strain CGMCC 1.8712; whole genome shotgun sequence.	8106	7474	9668	9893	0	35141	0.23	0.21	0.28	0.28	0.56	0.9422	0.0521	0.9496	1.9901	21	6	27	5963	4879	7109	6871	24822	0.25	0.19	0.28	0.28	0.56	0.8962	0.1808	0.8458	1.9759	32	20	6	26	5911	4836	7067	6807	24621	0.25	0.19	0.28	0.28	0	0.56	0.9025	0.1761	0.8498	1.9758	32	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	117	99	55	103	153	356	161	86	76	108	98	344	81	190	79	156	38	101	174	48	133	121	345	333	222	145	54	55	92	93	244	163	259	26	124	425	140	101	180	230	94	146	116	167	34	119	122	25	50	66	134	176	27	52	19	91	3	148	148	98	98	9	14	143
GCF_900107665.1	NZ_FNQT01000001	NZ_FNQT01000001.1	Haloplanus vescus strain CGMCC 1.8712; whole genome shotgun sequence.	245629	243002	468647	477706	285	1435269	0.17	0.17	0.33	0.33	0.66	0.9225	0.0149	0.9852	1.9252	778	780	1558	232618	201964	446216	422660	1303458	0.18	0.16	0.34	0.32	0.66	0.8724	0.2033	0.826	1.9044	1054	761	759	1520	230129	199477	441446	418024	1289076	0.18	0.16	0.34	0.32	0	0.66	0.8722	0.2039	0.8256	1.9038	995	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2	2	118	89	232	265	704	0.16	0.13	0.33	0.38	0	0.71	0.872	0.2131	0.8201	1.8624	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	7	15	22	302	325	513	558	1698	0.18	0.19	0.3	0.33	0	0.63	0.8715	0.1781	0.845	1.935	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	7321	4663	1033	1357	3413	22875	2479	2763	4707	4697	1129	11041	909	14824	1905	8248	904	10644	12712	1081	9598	4038	24600	3071	8422	10848	724	2167	1681	2985	12497	1550	27115	986	1407	34703	7731	8304	9573	22041	5791	13907	2161	21297	1258	2160	7492	427	1732	781	9181	20670	371	577	305	1459	392	7152	9524	2454	1913	342	786	4814