GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_900880625.1	NZ_CAAHFB010000001	NZ_CAAHFB010000001.1	Halorhabdus rudnickae isolate WSM64; whole genome shotgun sequence.	439691	433909	706619	708276	2288495	0.19	0.19	0.31	0.31	0.62	0.9403	0.0078	0.9923	1.9592	1152	1125	2277	382689	335227	599257	620470	1937643	0.2	0.17	0.31	0.32	0.63	0.8863	0.1816	0.8431	1.9387	1494	1100	1093	2193	376904	329776	590529	611127	1908336	0.2	0.17	0.31	0.32	0.63	0.8864	0.1811	0.8436	1.9387	1451	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	1	2	141	91	266	294	792	0.17	0.12	0.34	0.37	0	0.71	0.8714	0.2379	0.8036	1.8556	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	22	16	38	512	557	854	948	2871	0.18	0.19	0.3	0.33	0	0.63	0.8805	0.1638	0.8549	1.9404	3	3	1079	822	1163	1447	4511	0.22	0.17	0.28	0.32	0	0.61	0.8997	0.2186	0.8054	1.9535	11120	7136	2750	4209	8493	35433	6467	3583	6250	6959	2888	20447	2480	18428	4147	11973	2035	11390	17616	3228	18770	8937	25549	14752	13510	14605	2010	5161	3913	7500	24231	4094	36645	1246	4555	37819	10371	9557	12755	28951	7600	12888	4487	23093	1417	5440	13912	1255	2686	2124	12562	23350	1091	1746	1186	3653	319	13829	14130	5257	3828	409	1465	6422
GCF_900880625.1	NZ_CAAHFB010000002	NZ_CAAHFB010000002.1	Halorhabdus rudnickae isolate WSM64; whole genome shotgun sequence.	31162	31669	42711	43357	148899	0.21	0.21	0.29	0.29	0.58	0.9389	0.0156	0.9845	1.9823	56	85	141	29004	23860	36766	37661	127291	0.23	0.19	0.29	0.3	0.58	0.8971	0.1734	0.8489	1.9636	189	50	85	135	27578	22617	34892	35672	120759	0.23	0.19	0.29	0.3	0.58	0.8972	0.1754	0.8474	1.9637	175	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	602	609	225	362	662	2227	545	487	368	549	388	1462	296	1042	362	783	225	606	1093	267	804	573	1647	1250	975	850	203	270	377	522	1303	410	1631	132	447	2227	661	473	843	1147	459	698	408	1058	157	472	685	126	201	251	628	1128	116	210	95	418	32	780	840	444	444	27	76	595
GCF_900880625.1	NZ_CAAHFB010000003	NZ_CAAHFB010000003.1	Halorhabdus rudnickae isolate WSM64; whole genome shotgun sequence.	2154	2305	3242	3122	10823	0.2	0.21	0.3	0.29	0.59	0.9305	0.0527	0.9487	1.977	7	5	12	1958	1580	2500	2656	8694	0.23	0.18	0.28	0.31	0.59	0.8944	0.1775	0.8447	1.9625	16	6	5	11	1837	1459	2373	2527	8196	0.23	0.18	0.28	0.31	0.59	0.8923	0.1929	0.8313	1.9591	16	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	43	50	14	29	22	158	36	26	27	39	22	99	22	82	21	61	16	48	67	14	64	28	89	99	60	58	5	18	17	34	85	23	118	8	24	164	47	34	53	85	44	53	23	66	7	28	54	7	9	19	68	77	5	19	8	18	2	64	60	25	20	4	5	38
GCF_900880625.1	NZ_CAAHFB010000004	NZ_CAAHFB010000004.1	Halorhabdus rudnickae isolate WSM64; whole genome shotgun sequence.	43182	44951	70711	71474	230318	0.19	0.2	0.31	0.31	0.62	0.9292	0.0254	0.975	1.9598	145	91	236	38446	34412	60880	62354	196092	0.2	0.18	0.31	0.32	0.63	0.8877	0.1765	0.847	1.9409	246	138	89	227	37409	33536	59262	60752	190959	0.2	0.18	0.31	0.32	0.63	0.888	0.1768	0.8469	1.941	242	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2	0	2	29	25	46	46	146	0.2	0.17	0.32	0.31	0	0.63	0.8282	0.1973	0.83	1.9311	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1219	731	280	470	883	3371	616	362	674	679	294	1901	228	1868	418	1293	192	1069	1821	324	1885	998	2516	1360	1395	1420	201	543	378	752	2601	392	3728	120	431	3640	1056	923	1235	2878	768	1205	436	2222	145	547	1393	120	311	248	1320	2440	112	212	108	357	27	1380	1498	505	353	57	143	601
GCF_900880625.1	NZ_CAAHFB010000005	NZ_CAAHFB010000005.1	Halorhabdus rudnickae isolate WSM64; whole genome shotgun sequence.	64706	60611	83514	86373	295204	0.22	0.21	0.28	0.29	0.58	0.9461	0.0495	0.9518	1.983	189	110	299	55460	45333	69934	74273	245000	0.23	0.19	0.28	0.3	0.58	0.8954	0.2128	0.817	1.9633	283	185	109	294	54832	44813	69208	73466	242319	0.23	0.19	0.28	0.3	0.58	0.8955	0.2135	0.8165	1.9631	268	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1415	1348	512	646	1117	4486	1121	724	799	1065	639	3211	620	2087	736	1592	512	1447	2246	420	1644	1204	3169	2406	1889	1527	405	534	610	1052	2879	804	3330	268	753	4443	1350	1056	1690	2325	1014	1301	844	2156	297	937	1698	232	386	468	1470	2155	202	403	231	667	65	1666	1683	716	809	63	166	1063
GCF_900880625.1	NZ_CAAHFB010000006	NZ_CAAHFB010000006.1	Halorhabdus rudnickae isolate WSM64; whole genome shotgun sequence.	75204	70955	121055	121551	388765	0.19	0.18	0.31	0.31	0.62	0.9352	0.0311	0.9697	1.9549	210	186	396	65292	55882	101740	107095	330009	0.2	0.17	0.31	0.32	0.63	0.8849	0.1835	0.841	1.935	228	206	178	384	64461	55142	100391	105800	325794	0.2	0.17	0.31	0.32	0.63	0.8848	0.1845	0.8403	1.9346	220	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	3	3	6	83	89	141	143	456	0.18	0.2	0.31	0.31	0	0.62	0.8815	0.1155	0.8939	1.9498	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1960	1306	475	682	1344	6413	986	528	1085	1234	476	3482	380	3140	721	2004	318	2006	2902	546	3307	1461	4342	2388	2308	2560	351	857	561	1286	4116	595	6278	247	729	6443	1742	1637	2182	4858	1362	2301	813	4040	269	831	2449	233	474	331	2097	4013	208	287	228	572	54	2467	2339	911	598	52	278	1155