Assembly Assembly | Locus_ID Locus_ID | Version Version | Definition Sequence description | bp_chromo_A Total number of 'A' nucleotides in the whole sequence | bp_chromo_T Total number of 'T' nucleotides in the whole sequence | bp_chromo_C Total number of 'C' nucleotides in the whole sequence | bp_chromo_G Total number of 'G' nucleotides in the whole sequence | bp_chromo_N Total number of 'N' nucleotides in the whole sequence | bp_chromo_tot Total number of nucleotides in the whole sequence | fr_chromo_A Frequency of 'A' nucleotides in the whole sequence | fr_chromo_T Frequency of 'T' nucleotides in the whole sequence | fr_chromo_C Frequency of 'C' nucleotides in the whole sequence | fr_chromo_G Frequency of 'G' nucleotides in the whole sequence | fr_chromo_N Frequency of 'N' nucleotides in the whole sequence | GC_chromo Percentage of āGā + āCā nucleotides in the whole sequence | topo_entropy_chromo Topological entropy of the whole sequence | chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence | chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee | shannon_chromo Shannon entropy of the whole sequence | n_gene_pos Number of genes in the positive strand | n_gene_neg Number of genes in the negative strand | n_gene_tot Total number of genes in the chromosome | bp_gene_A Number of 'A' bases in total genes | bp_gene_T Number of 'T' bases in total genes | bp_gene_C Number of 'C' bases in total genes | bp_gene_G Number of 'G' bases in total genes | bp_gene_N Number of 'N' bases in total genes | bp_gene_tot Total number of bases in total genes | fr_gene_A Frequency of 'A' bases among total gene bases | fr_gene_T Frequency of 'T' bases among total gene bases | fr_gene_C Frequency of 'C' bases among total gene bases | fr_gene_G Frequency of 'G' bases among total gene bases | fr_gene_N Frequency of 'N' bases among total gene bases | GC_gene Percentage of 'G' and 'C' bases in total genes | topo_entropy_gene Topological entropy calculated from total gene sequences | chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes | chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes | shannon_gene Shannon entropy score for total genes | bp_gene_overlap_tot Number of bases overlapping between genes on two strands | n_cds_pos Number of CDS in the positive strand | n_cds_neg Number of CDS in the negative strand | n_cds_tot Total number of CDS in the chromosome | bp_cds_A Number of 'A' bases in total CDS (coding sequences) | bp_cds_T Number of 'T' bases in total CDS | bp_cds_C Number of 'C' bases in total CDS | bp_cds_G Number of 'G' bases in total CDS | bp_cds_N Number of 'N' bases in total CDS | bp_cds_tot Total bases in total CDS | fr_cds_A Frequency of 'A' bases among total CDS bases | fr_cds_T Frequency of 'T' bases among total CDS bases | fr_cds_C Frequency of 'C' bases among total CDS bases | fr_cds_G Frequency of 'G' bases among total CDS bases | fr_cds_N Frequency of 'N' bases among total CDS bases | GC_cds Percentage of 'G' and 'C' bases in total CDS | topo_entropy_cds Topological entropy calculated from total CDS sequences | chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS | chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS | shannon_cds Shannon entropy score for total CDS | bp_cds_overlap_tot Number of bases overlapping between CDS on two strands | bp_cds_intron_A Number of 'A' bases in total introns between CDS | bp_cds_intron_T Number of 'T' bases in total introns between CDS | bp_cds_intron_C Number of 'C' bases in total introns between CDS | bp_cds_intron_G Number of 'G' bases in total introns between CDS | bp_cds_intron_N Number of 'N' bases in total introns between CDS | bp_cds_intron_tot Total bases in total introns between CDS | fr_cds_intron_A Frequency of 'A' bases in total introns between CDS | fr_cds_intron_T Frequency of 'T' bases in total introns between CDS | fr_cds_intron_C Frequency of 'C' bases in total introns between CDS | fr_cds_intron_G Frequency of 'G' bases in total introns between CDS | fr_cds_intron_N Frequency of 'N' bases in total introns between CDS | GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS | topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS | chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS | chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS | shannon_cds_intron Shannon entropy score for total introns between CDS | bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands | n_ncRNA_pos Number of ncRNA in the positive strand | n_ncRNA_neg Number of ncRNA in the negative strand | n_ncRNA_tot Total number of ncRNA in the chromosome | bp_ncRNA_A Number of 'A' bases in total ncRNA | bp_ncRNA_T bp_ncRNA_T | bp_ncRNA_C Number of 'C' bases in total ncRNA | bp_ncRNA_G Number of 'G' bases in total ncRNA | bp_ncRNA_N Number of 'N' bases in total ncRNA | bp_ncRNA_tot Total bases in total ncRNA | fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases | fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases | fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases | fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases | fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases | GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA | topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences | chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA | chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA | shannon_ncRNA Shannon entropy score for total ncRNA | bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands | bp_nc_intron_A Number of 'A' bases in total introns between ncRNA | bp_nc_intron_T Number of 'T' bases in total introns between ncRNA | bp_nc_intron_C Number of 'C' bases in total introns between ncRNA | bp_nc_intron_G Number of 'G' bases in total introns between ncRNA | bp_nc_intron_N Number of 'N' bases in total introns between ncRNA | bp_nc_intron_tot Total bases in total introns between ncRNA | fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA | fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA | fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA | fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA | fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA | GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA | topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA | chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA | chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA | shannon_nc_intron Shannon entropy score for total introns between ncRNA | bp_nc_intron_overlap_tot Number of bases overlapping between introns between ncRNA on two strands | n_tRNA_pos Number of tRNA in the positive strand | n_tRNA_neg Number of tRNA in the negative strand | n_tRNA_tot Total number of tRNA in the chromosome | bp_tRNA_A Number of 'A' bases in total tRNA | bp_tRNA_T Number of 'T' bases in total tRNA | bp_tRNA_C Number of 'C' bases in total tRNA | bp_tRNA_G Number of 'G' bases in total tRNA | bp_tRNA_N Number of 'N' bases in total tRNA | bp_tRNA_tot Total bases in total tRNA | fr_tRNA_A Frequency of 'A' bases among total tRNA bases | fr_tRNA_T Frequency of 'T' bases among total tRNA bases | fr_tRNA_C Frequency of 'C' bases among total tRNA bases | fr_tRNA_G Frequency of 'G' bases among total tRNA bases | fr_tRNA_N Frequency of 'N' bases among total tRNA bases | GC_tRNA Percentage of 'G' and 'C' bases in total tRNA | topo_entropy_tRNA Topological entropy calculated from total tRNA sequences | chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA | chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA | shannon_tRNA Shannon entropy score for total tRNA | bp_tRNA_overlap_tot Number of bases overlapping between tRNA on two strands | n_rRNA_pos Number of rRNA in the positive strand | n_rRNA_neg Number of rRNA in the negative strand | n_rRNA_tot Total number of rRNA in the chromosome | bp_rRNA_A Number of 'A' bases in total rRNA | bp_rRNA_T Number of 'T' bases in total rRNA | bp_rRNA_C Number of 'C' bases in total rRNA | bp_rRNA_G Number of 'G' bases in total rRNA | bp_rRNA_N Number of 'N' bases in total rRNA | bp_rRNA_tot Total bases in total rRNA | fr_rRNA_A Frequency of 'A' bases among total rRNA bases | fr_rRNA_T Frequency of 'T' bases among total rRNA bases | fr_rRNA_C Frequency of 'C' bases among total rRNA bases | fr_rRNA_G Frequency of 'G' bases among total rRNA bases | fr_rRNA_N Frequency of 'N' bases among total rRNA bases | GC_rRNA Percentage of 'G' and 'C' bases in total rRNA | topo_entropy_rRNA Topological entropy calculated from total rRNA sequences | chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA | chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA | shannon_rRNA Shannon entropy score for total rRNA | bp_rRNA_overlap_tot Number of bases overlapping between rRNA on two strands | ATG ATG | AAG AAG | GTA GTA | ACT ACT | GCA GCA | GAG GAG | GCT GCT | ATT ATT | TCC TCC | TGG TGG | AAT AAT | GAA GAA | TCA TCA | ACG ACG | AGT AGT | AAC AAC | TCT TCT | GTG GTG | TTC TTC | TTT TTT | CTG CTG | GGT GGT | CTC CTC | GAT GAT | CAG CAG | ACC ACC | CTA CTA | TTG TTG | TAT TAT | GGA GGA | ATC ATC | CTT CTT | GTC GTC | ATA ATA | ACA ACA | GAC GAC | CAC CAC | CCC CCC | TAC TAC | GCC GCC | AGC AGC | CGC CGC | AAA AAA | GGC GGC | TGC TGC | GTT GTT | GGG GGG | AGA AGA | TGT TGT | CAT CAT | TCG TCG | GCG GCG | TTA TTA | CCT CCT | AGG AGG | CCA CCA | TAG TAG | CGG CGG | CCG CCG | CGT CGT | CAA CAA | TAA TAA | TGA TGA | CGA CGA |
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GCF_023028225.1 | NZ_CP095482 | NZ_CP095482.1 | Halorientalis litorea strain ZY14 chromosome; complete genome. | 472397 | 472860 | 928022 | 925023 | 0 | 2798302 | 0.17 | 0.17 | 0.33 | 0.33 | 0 | 0.66 | 0.925 | 0.0021 | 0.9979 | 1.9227 | 1514 | 1464 | 2978 | 455842 | 380795 | 842428 | 843643 | 0 | 2522708 | 0.18 | 0.15 | 0.33 | 0.33 | 0 | 0.66 | 0.8738 | 0.2017 | 0.828 | 1.9049 | 1830 | 1476 | 1427 | 2903 | 449425 | 375517 | 832481 | 833009 | 0 | 2490432 | 0.18 | 0.15 | 0.33 | 0.33 | 0 | 0.67 | 0.8736 | 0.2025 | 0.8274 | 1.9042 | 1817 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 2 | 0 | 2 | 122 | 89 | 236 | 251 | 0 | 698 | 0.17 | 0.13 | 0.34 | 0.36 | 0 | 0.7 | 0.8757 | 0.2037 | 0.8349 | 1.8729 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 20 | 26 | 46 | 624 | 681 | 1057 | 1148 | 0 | 3510 | 0.18 | 0.2 | 0.3 | 0.33 | 0 | 0.63 | 0.8691 | 0.1674 | 0.8555 | 1.9378 | 0 | 3 | 0 | 3 | 1066 | 795 | 1184 | 1467 | 0 | 4512 | 0.22 | 0.17 | 0.29 | 0.32 | 0 | 0.61 | 0.8917 | 0.2303 | 0.7947 | 1.9499 | 0 | 14312 | 8871 | 2913 | 2925 | 10009 | 47336 | 3871 | 3441 | 8815 | 8893 | 1032 | 20341 | 1726 | 27373 | 4564 | 17327 | 1098 | 22084 | 25594 | 1579 | 21780 | 10415 | 42102 | 3977 | 16084 | 22255 | 1374 | 6080 | 1629 | 6404 | 22921 | 1525 | 51304 | 2871 | 3796 | 67329 | 15707 | 14157 | 19966 | 43679 | 9823 | 21042 | 4353 | 36183 | 2207 | 3909 | 19860 | 1116 | 3595 | 778 | 15509 | 37112 | 662 | 853 | 1220 | 2865 | 591 | 19586 | 21065 | 5619 | 4274 | 463 | 1849 | 6151 |
GCF_023028225.1 | NZ_CP095483 | NZ_CP095483.1 | Halorientalis litorea strain ZY14 plasmid unnamed1; complete sequence. | 29760 | 28321 | 49865 | 48966 | 0 | 156912 | 0.19 | 0.18 | 0.32 | 0.31 | 0 | 0.63 | 0.9343 | 0.0339 | 0.9668 | 1.9506 | 92 | 66 | 158 | 24682 | 21627 | 41837 | 41589 | 0 | 129735 | 0.19 | 0.17 | 0.32 | 0.32 | 0 | 0.64 | 0.8845 | 0.1773 | 0.8465 | 1.9315 | 123 | 90 | 64 | 154 | 24358 | 21291 | 41256 | 40994 | 0 | 127899 | 0.19 | 0.17 | 0.32 | 0.32 | 0 | 0.64 | 0.8849 | 0.1783 | 0.8456 | 1.9315 | 123 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 749 | 410 | 246 | 261 | 614 | 2096 | 353 | 232 | 508 | 444 | 83 | 1177 | 163 | 1361 | 308 | 874 | 112 | 1092 | 1255 | 126 | 1045 | 673 | 2221 | 393 | 804 | 1037 | 110 | 330 | 116 | 455 | 1289 | 171 | 2462 | 183 | 344 | 2963 | 904 | 595 | 1008 | 1826 | 518 | 802 | 280 | 1523 | 122 | 357 | 943 | 79 | 207 | 72 | 842 | 1718 | 51 | 78 | 94 | 217 | 30 | 972 | 1118 | 392 | 282 | 20 | 104 | 419 |
GCF_023028225.1 | NZ_CP095484 | NZ_CP095484.1 | Halorientalis litorea strain ZY14 plasmid unnamed2; complete sequence. | 23451 | 23502 | 31247 | 31517 | 0 | 109717 | 0.21 | 0.21 | 0.28 | 0.29 | 0 | 0.57 | 0.9416 | 0.0054 | 0.9946 | 1.985 | 27 | 55 | 82 | 23310 | 18526 | 28163 | 28896 | 0 | 98895 | 0.24 | 0.18 | 0.29 | 0.29 | 0 | 0.58 | 0.8988 | 0.1879 | 0.8375 | 1.9636 | 53 | 27 | 54 | 81 | 23197 | 18424 | 28062 | 28771 | 0 | 98454 | 0.24 | 0.18 | 0.29 | 0.29 | 0 | 0.58 | 0.8986 | 0.1883 | 0.8373 | 1.9632 | 53 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 449 | 517 | 219 | 313 | 608 | 1908 | 473 | 388 | 356 | 445 | 339 | 1276 | 266 | 841 | 301 | 611 | 175 | 469 | 881 | 162 | 640 | 407 | 1397 | 1145 | 877 | 654 | 171 | 211 | 332 | 396 | 997 | 373 | 1162 | 101 | 342 | 1904 | 547 | 378 | 732 | 813 | 406 | 561 | 375 | 742 | 123 | 410 | 540 | 110 | 171 | 204 | 533 | 911 | 93 | 186 | 80 | 326 | 16 | 612 | 573 | 361 | 375 | 23 | 42 | 469 |
GCF_023028225.1 | NZ_CP095485 | NZ_CP095485.1 | Halorientalis litorea strain ZY14 plasmid unnamed3; complete sequence. | 30556 | 30060 | 39871 | 39763 | 0 | 140250 | 0.22 | 0.21 | 0.28 | 0.28 | 0 | 0.57 | 0.9407 | 0.0095 | 0.9905 | 1.9867 | 68 | 41 | 109 | 26817 | 21214 | 31730 | 33165 | 0 | 112926 | 0.24 | 0.18 | 0.29 | 0.29 | 0 | 0.58 | 0.8997 | 0.1911 | 0.8342 | 1.962 | 101 | 64 | 40 | 104 | 26167 | 20645 | 30878 | 32263 | 0 | 109953 | 0.24 | 0.18 | 0.29 | 0.29 | 0 | 0.58 | 0.8994 | 0.1944 | 0.8317 | 1.9616 | 97 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 498 | 555 | 269 | 378 | 580 | 2090 | 501 | 449 | 385 | 451 | 369 | 1426 | 309 | 956 | 374 | 765 | 213 | 532 | 980 | 229 | 697 | 509 | 1380 | 1063 | 947 | 748 | 214 | 272 | 329 | 502 | 1114 | 391 | 1383 | 164 | 415 | 2119 | 585 | 384 | 837 | 888 | 463 | 615 | 411 | 908 | 121 | 486 | 655 | 140 | 203 | 218 | 627 | 946 | 141 | 168 | 107 | 372 | 23 | 698 | 646 | 365 | 466 | 27 | 54 | 541 |
GCF_023028225.1 | NZ_CP095486 | NZ_CP095486.1 | Halorientalis litorea strain ZY14 plasmid unnamed4; complete sequence. | 1922 | 1422 | 2666 | 2886 | 0 | 8896 | 0.22 | 0.16 | 0.3 | 0.32 | 0 | 0.62 | 0.9039 | 0.1891 | 0.8318 | 1.9483 | 10 | 2 | 12 | 1604 | 1062 | 2242 | 2346 | 0 | 7254 | 0.23 | 0.15 | 0.3 | 0.32 | 0 | 0.63 | 0.8728 | 0.3062 | 0.7453 | 1.9324 | 15 | 10 | 2 | 12 | 1604 | 1062 | 2242 | 2346 | 0 | 7254 | 0.23 | 0.15 | 0.3 | 0.32 | 0 | 0.63 | 0.8728 | 0.3062 | 0.7453 | 1.9324 | 15 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 28 | 28 | 16 | 12 | 17 | 215 | 12 | 30 | 26 | 43 | 16 | 54 | 9 | 60 | 15 | 49 | 6 | 51 | 26 | 21 | 26 | 12 | 105 | 26 | 47 | 70 | 21 | 12 | 19 | 17 | 36 | 9 | 95 | 12 | 16 | 217 | 59 | 57 | 58 | 119 | 28 | 37 | 38 | 76 | 5 | 23 | 64 | 4 | 10 | 9 | 37 | 59 | 12 | 6 | 5 | 11 | 1 | 83 | 60 | 17 | 23 | 5 | 6 | 32 |