Assembly Assembly | Locus_ID Locus_ID | Version Version | Definition Sequence description | bp_chromo_A Total number of 'A' nucleotides in the whole sequence | bp_chromo_T Total number of 'T' nucleotides in the whole sequence | bp_chromo_C Total number of 'C' nucleotides in the whole sequence | bp_chromo_G Total number of 'G' nucleotides in the whole sequence | bp_chromo_N Total number of 'N' nucleotides in the whole sequence | bp_chromo_tot Total number of nucleotides in the whole sequence | fr_chromo_A Frequency of 'A' nucleotides in the whole sequence | fr_chromo_T Frequency of 'T' nucleotides in the whole sequence | fr_chromo_C Frequency of 'C' nucleotides in the whole sequence | fr_chromo_G Frequency of 'G' nucleotides in the whole sequence | fr_chromo_N Frequency of 'N' nucleotides in the whole sequence | GC_chromo Percentage of āGā + āCā nucleotides in the whole sequence | topo_entropy_chromo Topological entropy of the whole sequence | chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence | chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee | shannon_chromo Shannon entropy of the whole sequence | n_gene_pos Number of genes in the positive strand | n_gene_neg Number of genes in the negative strand | n_gene_tot Total number of genes in the chromosome | bp_gene_A Number of 'A' bases in total genes | bp_gene_T Number of 'T' bases in total genes | bp_gene_C Number of 'C' bases in total genes | bp_gene_G Number of 'G' bases in total genes | bp_gene_N Number of 'N' bases in total genes | bp_gene_tot Total number of bases in total genes | fr_gene_A Frequency of 'A' bases among total gene bases | fr_gene_T Frequency of 'T' bases among total gene bases | fr_gene_C Frequency of 'C' bases among total gene bases | fr_gene_G Frequency of 'G' bases among total gene bases | fr_gene_N Frequency of 'N' bases among total gene bases | GC_gene Percentage of 'G' and 'C' bases in total genes | topo_entropy_gene Topological entropy calculated from total gene sequences | chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes | chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes | shannon_gene Shannon entropy score for total genes | bp_gene_overlap_tot Number of bases overlapping between genes on two strands | n_cds_pos Number of CDS in the positive strand | n_cds_neg Number of CDS in the negative strand | n_cds_tot Total number of CDS in the chromosome | bp_cds_A Number of 'A' bases in total CDS (coding sequences) | bp_cds_T Number of 'T' bases in total CDS | bp_cds_C Number of 'C' bases in total CDS | bp_cds_G Number of 'G' bases in total CDS | bp_cds_N Number of 'N' bases in total CDS | bp_cds_tot Total bases in total CDS | fr_cds_A Frequency of 'A' bases among total CDS bases | fr_cds_T Frequency of 'T' bases among total CDS bases | fr_cds_C Frequency of 'C' bases among total CDS bases | fr_cds_G Frequency of 'G' bases among total CDS bases | fr_cds_N Frequency of 'N' bases among total CDS bases | GC_cds Percentage of 'G' and 'C' bases in total CDS | topo_entropy_cds Topological entropy calculated from total CDS sequences | chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS | chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS | shannon_cds Shannon entropy score for total CDS | bp_cds_overlap_tot Number of bases overlapping between CDS on two strands | bp_cds_intron_A Number of 'A' bases in total introns between CDS | bp_cds_intron_T Number of 'T' bases in total introns between CDS | bp_cds_intron_C Number of 'C' bases in total introns between CDS | bp_cds_intron_G Number of 'G' bases in total introns between CDS | bp_cds_intron_N Number of 'N' bases in total introns between CDS | bp_cds_intron_tot Total bases in total introns between CDS | fr_cds_intron_A Frequency of 'A' bases in total introns between CDS | fr_cds_intron_T Frequency of 'T' bases in total introns between CDS | fr_cds_intron_C Frequency of 'C' bases in total introns between CDS | fr_cds_intron_G Frequency of 'G' bases in total introns between CDS | fr_cds_intron_N Frequency of 'N' bases in total introns between CDS | GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS | topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS | chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS | chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS | shannon_cds_intron Shannon entropy score for total introns between CDS | bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands | n_ncRNA_pos Number of ncRNA in the positive strand | n_ncRNA_neg Number of ncRNA in the negative strand | n_ncRNA_tot Total number of ncRNA in the chromosome | bp_ncRNA_A Number of 'A' bases in total ncRNA | bp_ncRNA_T bp_ncRNA_T | bp_ncRNA_C Number of 'C' bases in total ncRNA | bp_ncRNA_G Number of 'G' bases in total ncRNA | bp_ncRNA_N Number of 'N' bases in total ncRNA | bp_ncRNA_tot Total bases in total ncRNA | fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases | fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases | fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases | fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases | fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases | GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA | topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences | chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA | chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA | shannon_ncRNA Shannon entropy score for total ncRNA | bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands | bp_nc_intron_A Number of 'A' bases in total introns between ncRNA | bp_nc_intron_T Number of 'T' bases in total introns between ncRNA | bp_nc_intron_C Number of 'C' bases in total introns between ncRNA | bp_nc_intron_G Number of 'G' bases in total introns between ncRNA | bp_nc_intron_N Number of 'N' bases in total introns between ncRNA | bp_nc_intron_tot Total bases in total introns between ncRNA | fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA | fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA | fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA | fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA | fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA | GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA | topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA | chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA | chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA | shannon_nc_intron Shannon entropy score for total introns between ncRNA | bp_nc_intron_overlap_tot Number of bases overlapping between introns between ncRNA on two strands | n_tRNA_pos Number of tRNA in the positive strand | n_tRNA_neg Number of tRNA in the negative strand | n_tRNA_tot Total number of tRNA in the chromosome | bp_tRNA_A Number of 'A' bases in total tRNA | bp_tRNA_T Number of 'T' bases in total tRNA | bp_tRNA_C Number of 'C' bases in total tRNA | bp_tRNA_G Number of 'G' bases in total tRNA | bp_tRNA_N Number of 'N' bases in total tRNA | bp_tRNA_tot Total bases in total tRNA | fr_tRNA_A Frequency of 'A' bases among total tRNA bases | fr_tRNA_T Frequency of 'T' bases among total tRNA bases | fr_tRNA_C Frequency of 'C' bases among total tRNA bases | fr_tRNA_G Frequency of 'G' bases among total tRNA bases | fr_tRNA_N Frequency of 'N' bases among total tRNA bases | GC_tRNA Percentage of 'G' and 'C' bases in total tRNA | topo_entropy_tRNA Topological entropy calculated from total tRNA sequences | chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA | chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA | shannon_tRNA Shannon entropy score for total tRNA | bp_tRNA_overlap_tot Number of bases overlapping between tRNA on two strands | n_rRNA_pos Number of rRNA in the positive strand | n_rRNA_neg Number of rRNA in the negative strand | n_rRNA_tot Total number of rRNA in the chromosome | bp_rRNA_A Number of 'A' bases in total rRNA | bp_rRNA_T Number of 'T' bases in total rRNA | bp_rRNA_C Number of 'C' bases in total rRNA | bp_rRNA_G Number of 'G' bases in total rRNA | bp_rRNA_N Number of 'N' bases in total rRNA | bp_rRNA_tot Total bases in total rRNA | fr_rRNA_A Frequency of 'A' bases among total rRNA bases | fr_rRNA_T Frequency of 'T' bases among total rRNA bases | fr_rRNA_C Frequency of 'C' bases among total rRNA bases | fr_rRNA_G Frequency of 'G' bases among total rRNA bases | fr_rRNA_N Frequency of 'N' bases among total rRNA bases | GC_rRNA Percentage of 'G' and 'C' bases in total rRNA | topo_entropy_rRNA Topological entropy calculated from total rRNA sequences | chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA | chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA | shannon_rRNA Shannon entropy score for total rRNA | bp_rRNA_overlap_tot Number of bases overlapping between rRNA on two strands | ATG ATG | AAG AAG | GTA GTA | ACT ACT | GCA GCA | GAG GAG | GCT GCT | ATT ATT | TCC TCC | TGG TGG | AAT AAT | GAA GAA | TCA TCA | ACG ACG | AGT AGT | AAC AAC | TCT TCT | GTG GTG | TTC TTC | TTT TTT | CTG CTG | GGT GGT | CTC CTC | GAT GAT | CAG CAG | ACC ACC | CTA CTA | TTG TTG | TAT TAT | GGA GGA | ATC ATC | CTT CTT | GTC GTC | ATA ATA | ACA ACA | GAC GAC | CAC CAC | CCC CCC | TAC TAC | GCC GCC | AGC AGC | CGC CGC | AAA AAA | GGC GGC | TGC TGC | GTT GTT | GGG GGG | AGA AGA | TGT TGT | CAT CAT | TCG TCG | GCG GCG | TTA TTA | CCT CCT | AGG AGG | CCA CCA | TAG TAG | CGG CGG | CCG CCG | CGT CGT | CAA CAA | TAA TAA | TGA TGA | CGA CGA |
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GCF_001989615.1 | NZ_CP019067 | NZ_CP019067.1 | Halorientalis sp. IM1011 chromosome; complete genome. | 576597 | 574642 | 1114066 | 1116308 | 0 | 3381613 | 0.17 | 0.17 | 0.33 | 0.33 | 0 | 0.66 | 0.93 | 0.0027 | 0.9973 | 1.9252 | 1846 | 1740 | 3586 | 547757 | 457279 | 1000692 | 1009155 | 0 | 3014883 | 0.18 | 0.15 | 0.33 | 0.33 | 0 | 0.66 | 0.8733 | 0.2066 | 0.8237 | 1.9058 | 2140 | 1789 | 1678 | 3467 | 537874 | 449372 | 985683 | 993507 | 0 | 2966436 | 0.18 | 0.15 | 0.33 | 0.34 | 0 | 0.66 | 0.8731 | 0.2075 | 0.823 | 1.905 | 2099 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 2 | 0 | 2 | 139 | 85 | 261 | 286 | 0 | 771 | 0.18 | 0.11 | 0.34 | 0.37 | 0 | 0.71 | 0.8771 | 0.2659 | 0.786 | 1.854 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 27 | 45 | 72 | 961 | 1027 | 1659 | 1805 | 0 | 5452 | 0.18 | 0.19 | 0.3 | 0.33 | 0 | 0.63 | 0.8686 | 0.1768 | 0.8464 | 1.9316 | 0 | 3 | 3 | 6 | 2167 | 1599 | 2383 | 2903 | 0 | 9052 | 0.21 | 0.17 | 0.3 | 0.32 | 0 | 0.62 | 0.9045 | 0.2107 | 0.8121 | 1.9442 | 0 | 17336 | 11827 | 2936 | 2921 | 8160 | 62788 | 4607 | 2631 | 11754 | 11076 | 2150 | 23398 | 2088 | 27341 | 4222 | 19997 | 1426 | 24498 | 30200 | 2362 | 35691 | 10922 | 43203 | 11730 | 22499 | 30323 | 1542 | 4276 | 2708 | 8148 | 35002 | 2298 | 59197 | 1337 | 3743 | 74178 | 17688 | 18800 | 22959 | 52072 | 13219 | 24226 | 5535 | 43874 | 2779 | 3780 | 22334 | 1407 | 4093 | 1306 | 19291 | 41957 | 779 | 1233 | 1644 | 3128 | 780 | 25226 | 23028 | 4657 | 2444 | 549 | 2138 | 7371 |
GCF_001989615.1 | NZ_CP019069 | NZ_CP019069.1 | Halorientalis sp. IM1011 plasmid pHOS100; complete sequence. | 20815 | 21172 | 38326 | 40250 | 0 | 120563 | 0.17 | 0.18 | 0.32 | 0.33 | 0 | 0.65 | 0.9214 | 0.033 | 0.9677 | 1.9322 | 51 | 68 | 119 | 16848 | 14493 | 31241 | 30658 | 0 | 93240 | 0.19 | 0.16 | 0.33 | 0.33 | 0 | 0.66 | 0.8757 | 0.2144 | 0.8196 | 1.9125 | 125 | 49 | 66 | 115 | 16549 | 14119 | 30432 | 29917 | 0 | 91017 | 0.19 | 0.16 | 0.33 | 0.33 | 0 | 0.65 | 0.8764 | 0.2118 | 0.8207 | 1.9146 | 115 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 1 | 0 | 1 | 12 | 15 | 32 | 31 | 0 | 90 | 0.13 | 0.17 | 0.36 | 0.34 | 0 | 0.7 | 0.8809 | 0.127 | 0.8844 | 1.8785 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 423 | 291 | 119 | 100 | 253 | 1664 | 144 | 82 | 351 | 352 | 76 | 693 | 97 | 930 | 124 | 588 | 50 | 682 | 855 | 74 | 1094 | 326 | 1434 | 384 | 769 | 880 | 58 | 135 | 117 | 263 | 1013 | 78 | 1752 | 50 | 129 | 2110 | 635 | 502 | 819 | 1261 | 388 | 830 | 176 | 1160 | 106 | 144 | 682 | 61 | 164 | 53 | 681 | 1262 | 26 | 40 | 72 | 152 | 21 | 1001 | 801 | 202 | 118 | 15 | 79 | 348 |
GCF_001989615.1 | NZ_CP019068 | NZ_CP019068.1 | Halorientalis sp. IM1011 plasmid pHOS300; complete sequence. | 52747 | 54693 | 84187 | 85186 | 0 | 276813 | 0.19 | 0.2 | 0.3 | 0.31 | 0 | 0.61 | 0.9389 | 0.024 | 0.9763 | 1.9635 | 102 | 132 | 234 | 45260 | 37207 | 69789 | 68760 | 0 | 221016 | 0.21 | 0.17 | 0.31 | 0.31 | 0 | 0.62 | 0.8882 | 0.1805 | 0.8429 | 1.9415 | 209 | 99 | 131 | 230 | 44480 | 36677 | 68924 | 67887 | 0 | 217968 | 0.21 | 0.17 | 0.31 | 0.31 | 0 | 0.62 | 0.8884 | 0.1784 | 0.8444 | 1.9415 | 189 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 1121 | 868 | 280 | 433 | 1029 | 3791 | 608 | 457 | 804 | 865 | 382 | 2104 | 316 | 2259 | 528 | 1509 | 259 | 1457 | 2071 | 288 | 1928 | 901 | 3363 | 1491 | 1888 | 1852 | 212 | 412 | 459 | 762 | 2623 | 368 | 3802 | 147 | 573 | 4734 | 1307 | 1064 | 1772 | 2921 | 925 | 1490 | 608 | 2348 | 213 | 500 | 1542 | 159 | 336 | 243 | 1427 | 2603 | 113 | 191 | 142 | 506 | 45 | 1692 | 1649 | 526 | 459 | 35 | 150 | 746 |