GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	fr_chromo_N Frequency of 'N' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	fr_cds_N Frequency of 'N' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_037081675.1	NZ_JAZAQL010000001	NZ_JAZAQL010000001.1	Halorubellus litoreus strain GX26 spades_K_21_77_1; whole genome shotgun sequence.	231723	232245	511646	519787	581	1495982	0.15	0.16	0.34	0.35	0	0.69	0.9097	0.009	0.991	1.8933	712	763	1475	214239	182481	452551	455773	1305044	0.17	0.14	0.34	0.35	0.69	0.8564	0.2337	0.8016	1.8735	812	697	745	1442	211108	179566	445721	449666	1286061	0.17	0.14	0.35	0.35	0	0.69	0.8563	0.2336	0.8016	1.8729	808	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	6	7	13	184	202	272	313	971	0.19	0.21	0.28	0.32	0	0.6	0.8898	0.1682	0.85	1.96	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	6898	6310	542	629	2819	26034	2019	397	4534	4760	402	6709	370	15385	1527	8692	342	11157	13782	111	7850	4021	26042	1652	8342	10792	260	1422	554	1848	10903	441	31191	858	571	38618	7786	6933	10414	16955	6801	15376	882	21107	2172	1204	10250	255	664	671	9107	32612	126	339	525	934	254	7276	10960	1609	906	190	998	2597
GCF_037081675.1	NZ_JAZAQL010000002	NZ_JAZAQL010000002.1	Halorubellus litoreus strain GX26 spades_K_21_77_2; whole genome shotgun sequence.	245572	247686	498769	491545	97	1483669	0.17	0.17	0.34	0.33	0	0.67	0.9221	0.0116	0.9885	1.9174	700	791	1491	226496	189331	430180	433601	1279608	0.18	0.15	0.34	0.34	0.67	0.8637	0.2251	0.8086	1.8908	945	678	770	1448	223764	186850	425500	428992	1265106	0.18	0.15	0.34	0.34	0	0.67	0.8633	0.2262	0.8077	1.8896	936	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	1	80	34	123	135	372	0.22	0.09	0.33	0.36	0	0.69	0.8541	0.45	0.6681	1.8509	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	16	11	27	369	406	625	665	2065	0.18	0.2	0.3	0.32	0	0.63	0.8702	0.1816	0.8393	1.9422	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	7010	6565	900	1024	3416	25245	2479	1113	4578	4754	971	8012	795	14558	1813	9237	723	10385	13434	466	7770	4317	24085	2981	8596	10289	563	1724	1068	2453	11304	1058	28406	1146	926	36242	7884	6693	10398	14902	6305	13770	1346	19274	1971	1850	9658	496	828	977	8492	27999	371	642	656	1418	249	7144	10420	1905	1534	210	989	2915
GCF_037081675.1	NZ_JAZAQL010000003	NZ_JAZAQL010000003.1	Halorubellus litoreus strain GX26 spades_K_21_77_3; whole genome shotgun sequence.	101077	98159	218301	213760	0	631297	0.16	0.16	0.35	0.34	0	0.68	0.9096	0.0252	0.9752	1.8994	289	273	562	89426	78993	190986	187870	547275	0.17	0.15	0.35	0.34	0.69	0.8596	0.2129	0.8172	1.8812	500	285	269	554	88298	78159	188914	185949	541320	0.16	0.15	0.35	0.34	0	0.69	0.8594	0.2128	0.8172	1.8809	425	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2667	2133	273	316	1392	9408	973	180	2018	2101	195	3060	230	6928	737	3785	160	4537	5801	45	3469	1807	11357	781	3288	4877	161	585	238	1032	4477	252	13791	437	261	15361	3203	2850	4462	7091	2907	5781	363	8357	808	613	4570	182	324	296	4251	12825	91	169	309	566	79	3255	4934	669	433	39	436	1464
GCF_037081675.1	NZ_JAZAQL010000004	NZ_JAZAQL010000004.1	Halorubellus litoreus strain GX26 spades_K_21_77_4; whole genome shotgun sequence.	71560	70717	126865	129015	0	398157	0.18	0.18	0.32	0.32	0	0.64	0.9318	0.0143	0.9858	1.9404	171	124	295	64996	52563	113175	107624	338358	0.2	0.16	0.33	0.31	0.64	0.8788	0.2371	0.7979	1.915	204	166	123	289	64154	51986	111783	106559	334482	0.2	0.16	0.33	0.31	0	0.64	0.8786	0.2352	0.7993	1.9148	204	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1453	1460	359	558	1496	6018	1018	499	1242	1280	488	2713	406	3404	753	2042	317	2237	3081	210	2263	1108	6310	1486	2528	3227	280	717	488	890	3194	498	6157	348	574	8643	2156	1720	2349	4506	1617	3117	628	4026	507	708	2225	271	294	358	2357	5661	184	300	311	863	48	2156	2545	684	709	43	198	1208
GCF_037081675.1	NZ_JAZAQL010000005	NZ_JAZAQL010000005.1	Halorubellus litoreus strain GX26 spades_K_21_77_5; whole genome shotgun sequence.	54369	54801	114574	112919	0	336663	0.16	0.16	0.34	0.34	0	0.68	0.9115	0.0112	0.9888	1.9089	164	145	309	51168	43192	99884	102122	296366	0.17	0.15	0.34	0.34	0.68	0.8616	0.233	0.8014	1.8868	186	160	138	298	50089	42148	97689	99526	289452	0.17	0.15	0.34	0.34	0	0.68	0.8612	0.2366	0.7986	1.886	181	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	1	51	47	94	121	313	0.16	0.15	0.3	0.39	0	0.69	0.8899	0.1664	0.8492	1.8885	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2	4	6	80	79	135	149	443	0.18	0.17	0.3	0.34	0	0.65	0.8587	0.2282	0.8216	1.9054	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1719	1541	144	209	780	5524	531	128	1260	968	149	1641	126	3683	419	2355	100	2588	3142	31	1806	1123	5540	500	2025	2346	96	369	143	517	2810	127	6679	224	178	8179	1603	1412	2428	3454	1571	2895	260	4451	416	339	2431	80	154	149	2294	6883	42	107	106	235	49	1538	2379	384	270	48	201	605
GCF_037081675.1	NZ_JAZAQL010000006	NZ_JAZAQL010000006.1	Halorubellus litoreus strain GX26 spades_K_21_77_6; whole genome shotgun sequence.	36796	38014	81361	82061	0	238232	0.15	0.16	0.34	0.34	0	0.69	0.9052	0.0206	0.9797	1.8977	120	124	244	34053	28563	70130	70420	203166	0.17	0.14	0.34	0.34	0.68	0.8605	0.2226	0.8103	1.8817	153	115	121	236	33193	27846	68610	68765	198414	0.17	0.14	0.34	0.34	0	0.69	0.8601	0.2239	0.8094	1.88	137	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	3	0	3	41	49	56	70	216	0.19	0.23	0.26	0.32	0	0.58	0.8777	0.208	0.8239	1.9571	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1032	1022	82	144	465	3871	335	71	742	772	81	1068	74	2492	246	1428	57	1739	2102	12	1200	668	3965	263	1304	1628	52	201	80	303	1727	73	4705	124	115	5925	1219	1055	1553	2484	1065	2406	155	3102	312	227	1570	34	114	103	1429	4762	20	51	81	168	46	1170	1771	285	154	28	162	444
GCF_037081675.1	NZ_JAZAQL010000007	NZ_JAZAQL010000007.1	Halorubellus litoreus strain GX26 spades_K_21_77_7; whole genome shotgun sequence.	1179	878	1268	1518	93	4936	0.24	0.18	0.26	0.31	0.02	0.56	0.9342	0.2361	0.79	1.9634	3	0	3	1118	799	1181	1426	4524	0.23	0.17	0.27	0.33	0.6	0.9118	0.2298	0.7958	1.9553	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	3	3	1118	799	1181	1426	4524	0.23	0.17	0.27	0.33	0	0.6	0.9118	0.2298	0.7958	1.9553	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GCF_037081675.1	NZ_JAZAQL010000008	NZ_JAZAQL010000008.1	Halorubellus litoreus strain GX26 spades_K_21_77_8; whole genome shotgun sequence.	243	400	845	642	0	2130	0.11	0.19	0.4	0.3	0	0.7	0.8785	0.3807	0.6836	1.861	0	2	2	252	140	367	506	1265	0.2	0.11	0.28	0.41	0.7	0.8545	0.4896	0.615	1.8444	0	0	1	1	80	37	110	181	408	0.2	0.09	0.27	0.44	0	0.71	0.8663	0.6115	0.5351	1.805	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	5	2	0	0	3	14	1	0	1	3	0	2	0	7	0	3	0	4	4	0	2	1	1	1	3	1	0	0	0	1	4	0	2	0	0	8	1	1	2	4	5	0	0	10	0	0	10	2	0	0	1	3	0	0	0	3	0	11	7	0	1	0	1	1
GCF_037081675.1	NZ_JAZAQL010000009	NZ_JAZAQL010000009.1	Halorubellus litoreus strain GX26 spades_K_21_77_9; whole genome shotgun sequence.	100	147	236	236	0	719	0.14	0.2	0.33	0.33	0	0.66	0.8619	0.1903	0.8401	1.9191	0	1	1	147	100	236	236	719	0.2	0.14	0.33	0.33	0.66	0.8833	0.1903	0.8401	1.9191	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0