Assembly Assembly | Locus_ID Locus_ID | Version Version | Definition Sequence description | bp_chromo_A Total number of 'A' nucleotides in the whole sequence | bp_chromo_T Total number of 'T' nucleotides in the whole sequence | bp_chromo_C Total number of 'C' nucleotides in the whole sequence | bp_chromo_G Total number of 'G' nucleotides in the whole sequence | bp_chromo_N Total number of 'N' nucleotides in the whole sequence | bp_chromo_tot Total number of nucleotides in the whole sequence | fr_chromo_A Frequency of 'A' nucleotides in the whole sequence | fr_chromo_T Frequency of 'T' nucleotides in the whole sequence | fr_chromo_C Frequency of 'C' nucleotides in the whole sequence | fr_chromo_G Frequency of 'G' nucleotides in the whole sequence | fr_chromo_N Frequency of 'N' nucleotides in the whole sequence | GC_chromo Percentage of āGā + āCā nucleotides in the whole sequence | topo_entropy_chromo Topological entropy of the whole sequence | chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence | chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee | shannon_chromo Shannon entropy of the whole sequence | n_gene_pos Number of genes in the positive strand | n_gene_neg Number of genes in the negative strand | n_gene_tot Total number of genes in the chromosome | bp_gene_A Number of 'A' bases in total genes | bp_gene_T Number of 'T' bases in total genes | bp_gene_C Number of 'C' bases in total genes | bp_gene_G Number of 'G' bases in total genes | bp_gene_N Number of 'N' bases in total genes | bp_gene_tot Total number of bases in total genes | fr_gene_A Frequency of 'A' bases among total gene bases | fr_gene_T Frequency of 'T' bases among total gene bases | fr_gene_C Frequency of 'C' bases among total gene bases | fr_gene_G Frequency of 'G' bases among total gene bases | fr_gene_N Frequency of 'N' bases among total gene bases | GC_gene Percentage of 'G' and 'C' bases in total genes | topo_entropy_gene Topological entropy calculated from total gene sequences | chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes | chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes | shannon_gene Shannon entropy score for total genes | bp_gene_overlap_tot Number of bases overlapping between genes on two strands | n_cds_pos Number of CDS in the positive strand | n_cds_neg Number of CDS in the negative strand | n_cds_tot Total number of CDS in the chromosome | bp_cds_A Number of 'A' bases in total CDS (coding sequences) | bp_cds_T Number of 'T' bases in total CDS | bp_cds_C Number of 'C' bases in total CDS | bp_cds_G Number of 'G' bases in total CDS | bp_cds_N Number of 'N' bases in total CDS | bp_cds_tot Total bases in total CDS | fr_cds_A Frequency of 'A' bases among total CDS bases | fr_cds_T Frequency of 'T' bases among total CDS bases | fr_cds_C Frequency of 'C' bases among total CDS bases | fr_cds_G Frequency of 'G' bases among total CDS bases | fr_cds_N Frequency of 'N' bases among total CDS bases | GC_cds Percentage of 'G' and 'C' bases in total CDS | topo_entropy_cds Topological entropy calculated from total CDS sequences | chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS | chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS | shannon_cds Shannon entropy score for total CDS | bp_cds_overlap_tot Number of bases overlapping between CDS on two strands | bp_cds_intron_A Number of 'A' bases in total introns between CDS | bp_cds_intron_T Number of 'T' bases in total introns between CDS | bp_cds_intron_C Number of 'C' bases in total introns between CDS | bp_cds_intron_G Number of 'G' bases in total introns between CDS | bp_cds_intron_N Number of 'N' bases in total introns between CDS | bp_cds_intron_tot Total bases in total introns between CDS | fr_cds_intron_A Frequency of 'A' bases in total introns between CDS | fr_cds_intron_T Frequency of 'T' bases in total introns between CDS | fr_cds_intron_C Frequency of 'C' bases in total introns between CDS | fr_cds_intron_G Frequency of 'G' bases in total introns between CDS | fr_cds_intron_N Frequency of 'N' bases in total introns between CDS | GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS | topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS | chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS | chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS | shannon_cds_intron Shannon entropy score for total introns between CDS | bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands | n_ncRNA_pos Number of ncRNA in the positive strand | n_ncRNA_neg Number of ncRNA in the negative strand | n_ncRNA_tot Total number of ncRNA in the chromosome | bp_ncRNA_A Number of 'A' bases in total ncRNA | bp_ncRNA_T bp_ncRNA_T | bp_ncRNA_C Number of 'C' bases in total ncRNA | bp_ncRNA_G Number of 'G' bases in total ncRNA | bp_ncRNA_N Number of 'N' bases in total ncRNA | bp_ncRNA_tot Total bases in total ncRNA | fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases | fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases | fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases | fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases | fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases | GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA | topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences | chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA | chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA | shannon_ncRNA Shannon entropy score for total ncRNA | bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands | bp_nc_intron_A Number of 'A' bases in total introns between ncRNA | bp_nc_intron_T Number of 'T' bases in total introns between ncRNA | bp_nc_intron_C Number of 'C' bases in total introns between ncRNA | bp_nc_intron_G Number of 'G' bases in total introns between ncRNA | bp_nc_intron_N Number of 'N' bases in total introns between ncRNA | bp_nc_intron_tot Total bases in total introns between ncRNA | fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA | fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA | fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA | fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA | fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA | GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA | topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA | chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA | chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA | shannon_nc_intron Shannon entropy score for total introns between ncRNA | bp_nc_intron_overlap_tot Number of bases overlapping between introns between ncRNA on two strands | n_tRNA_pos Number of tRNA in the positive strand | n_tRNA_neg Number of tRNA in the negative strand | n_tRNA_tot Total number of tRNA in the chromosome | bp_tRNA_A Number of 'A' bases in total tRNA | bp_tRNA_T Number of 'T' bases in total tRNA | bp_tRNA_C Number of 'C' bases in total tRNA | bp_tRNA_G Number of 'G' bases in total tRNA | bp_tRNA_N Number of 'N' bases in total tRNA | bp_tRNA_tot Total bases in total tRNA | fr_tRNA_A Frequency of 'A' bases among total tRNA bases | fr_tRNA_T Frequency of 'T' bases among total tRNA bases | fr_tRNA_C Frequency of 'C' bases among total tRNA bases | fr_tRNA_G Frequency of 'G' bases among total tRNA bases | fr_tRNA_N Frequency of 'N' bases among total tRNA bases | GC_tRNA Percentage of 'G' and 'C' bases in total tRNA | topo_entropy_tRNA Topological entropy calculated from total tRNA sequences | chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA | chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA | shannon_tRNA Shannon entropy score for total tRNA | bp_tRNA_overlap_tot Number of bases overlapping between tRNA on two strands | n_rRNA_pos Number of rRNA in the positive strand | n_rRNA_neg Number of rRNA in the negative strand | n_rRNA_tot Total number of rRNA in the chromosome | bp_rRNA_A Number of 'A' bases in total rRNA | bp_rRNA_T Number of 'T' bases in total rRNA | bp_rRNA_C Number of 'C' bases in total rRNA | bp_rRNA_G Number of 'G' bases in total rRNA | bp_rRNA_N Number of 'N' bases in total rRNA | bp_rRNA_tot Total bases in total rRNA | fr_rRNA_A Frequency of 'A' bases among total rRNA bases | fr_rRNA_T Frequency of 'T' bases among total rRNA bases | fr_rRNA_C Frequency of 'C' bases among total rRNA bases | fr_rRNA_G Frequency of 'G' bases among total rRNA bases | fr_rRNA_N Frequency of 'N' bases among total rRNA bases | GC_rRNA Percentage of 'G' and 'C' bases in total rRNA | topo_entropy_rRNA Topological entropy calculated from total rRNA sequences | chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA | chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA | shannon_rRNA Shannon entropy score for total rRNA | bp_rRNA_overlap_tot Number of bases overlapping between rRNA on two strands | ATG ATG | AAG AAG | GTA GTA | ACT ACT | GCA GCA | GAG GAG | GCT GCT | ATT ATT | TCC TCC | TGG TGG | AAT AAT | GAA GAA | TCA TCA | ACG ACG | AGT AGT | AAC AAC | TCT TCT | GTG GTG | TTC TTC | TTT TTT | CTG CTG | GGT GGT | CTC CTC | GAT GAT | CAG CAG | ACC ACC | CTA CTA | TTG TTG | TAT TAT | GGA GGA | ATC ATC | CTT CTT | GTC GTC | ATA ATA | ACA ACA | GAC GAC | CAC CAC | CCC CCC | TAC TAC | GCC GCC | AGC AGC | CGC CGC | AAA AAA | GGC GGC | TGC TGC | GTT GTT | GGG GGG | AGA AGA | TGT TGT | CAT CAT | TCG TCG | GCG GCG | TTA TTA | CCT CCT | AGG AGG | CCA CCA | TAG TAG | CGG CGG | CCG CCG | CGT CGT | CAA CAA | TAA TAA | TGA TGA | CGA CGA |
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GCF_029338395.1 | NZ_CP119809 | NZ_CP119809.1 | Halorussus caseinilyticus strain DT72 chromosome; complete genome. | 609229 | 605393 | 1137086 | 1131693 | 0 | 3483401 | 0.17 | 0.17 | 0.33 | 0.32 | 0 | 0.65 | 0.9209 | 0.0055 | 0.9945 | 1.9329 | 1758 | 1722 | 3480 | 542971 | 440261 | 957722 | 967155 | 0 | 2908109 | 0.19 | 0.15 | 0.32 | 0.33 | 0 | 0.66 | 0.872 | 0.2161 | 0.8181 | 1.9089 | 2433 | 1701 | 1665 | 3366 | 532375 | 431365 | 940703 | 949334 | 0 | 2853777 | 0.19 | 0.15 | 0.32 | 0.33 | 0 | 0.66 | 0.8718 | 0.2167 | 0.8176 | 1.9082 | 2350 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 2 | 0 | 2 | 144 | 93 | 241 | 269 | 0 | 747 | 0.19 | 0.13 | 0.32 | 0.36 | 0 | 0.68 | 0.8708 | 0.254 | 0.7924 | 1.8866 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 25 | 24 | 49 | 666 | 741 | 1095 | 1205 | 0 | 3707 | 0.18 | 0.2 | 0.29 | 0.32 | 0 | 0.62 | 0.8688 | 0.1982 | 0.8299 | 1.9417 | 0 | 3 | 3 | 6 | 2280 | 1577 | 2381 | 2790 | 0 | 9028 | 0.23 | 0.16 | 0.29 | 0.31 | 0 | 0.6 | 0.9062 | 0.26 | 0.7728 | 1.9512 | 0 | 16232 | 14460 | 3891 | 3343 | 6207 | 55347 | 4063 | 6100 | 9976 | 11057 | 1892 | 28157 | 1049 | 22936 | 4886 | 21831 | 1607 | 27372 | 30454 | 2099 | 24710 | 11016 | 44891 | 3667 | 16856 | 31715 | 1867 | 6399 | 2002 | 10281 | 23619 | 2927 | 52546 | 2444 | 1644 | 75640 | 16669 | 18778 | 23991 | 44513 | 13087 | 25270 | 5893 | 44038 | 3968 | 5612 | 16958 | 1659 | 2227 | 981 | 23495 | 48853 | 1032 | 988 | 1189 | 1707 | 986 | 20685 | 21397 | 3038 | 5550 | 630 | 1750 | 11132 |
GCF_029338395.1 | NZ_CP119810 | NZ_CP119810.1 | Halorussus caseinilyticus strain DT72 plasmid unnamed1; complete sequence. | 72569 | 73934 | 140563 | 140281 | 0 | 427347 | 0.17 | 0.17 | 0.33 | 0.33 | 0 | 0.66 | 0.9169 | 0.0103 | 0.9898 | 1.9275 | 197 | 199 | 396 | 65441 | 54126 | 118901 | 120515 | 0 | 358983 | 0.18 | 0.15 | 0.33 | 0.33 | 0 | 0.66 | 0.8719 | 0.1973 | 0.8313 | 1.9077 | 233 | 196 | 197 | 393 | 64964 | 53744 | 118112 | 119691 | 0 | 356511 | 0.18 | 0.15 | 0.33 | 0.33 | 0 | 0.66 | 0.8719 | 0.1978 | 0.8309 | 1.9076 | 233 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 1805 | 1546 | 456 | 389 | 708 | 6806 | 441 | 753 | 1295 | 1455 | 249 | 3218 | 134 | 3084 | 597 | 2736 | 200 | 3569 | 3974 | 291 | 3105 | 1198 | 5517 | 384 | 1999 | 3994 | 220 | 821 | 248 | 1308 | 2497 | 337 | 6358 | 318 | 236 | 9323 | 2229 | 2283 | 3256 | 5326 | 1477 | 3201 | 743 | 5470 | 595 | 622 | 2368 | 234 | 295 | 128 | 3240 | 6400 | 150 | 107 | 220 | 207 | 114 | 2911 | 2880 | 365 | 652 | 76 | 203 | 1516 |
GCF_029338395.1 | NZ_CP119811 | NZ_CP119811.1 | Halorussus caseinilyticus strain DT72 plasmid unnamed2; complete sequence. | 34840 | 35921 | 57297 | 57333 | 0 | 185391 | 0.19 | 0.19 | 0.31 | 0.31 | 0 | 0.62 | 0.9266 | 0.0156 | 0.9846 | 1.9592 | 84 | 66 | 150 | 30500 | 23463 | 47133 | 46486 | 0 | 147582 | 0.21 | 0.17 | 0.31 | 0.31 | 0 | 0.62 | 0.8829 | 0.2286 | 0.8063 | 1.932 | 449 | 79 | 65 | 144 | 29688 | 22805 | 46083 | 45337 | 0 | 143913 | 0.21 | 0.17 | 0.31 | 0.31 | 0 | 0.62 | 0.8832 | 0.2312 | 0.8045 | 1.9307 | 449 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 634 | 592 | 236 | 233 | 424 | 2238 | 259 | 356 | 445 | 543 | 223 | 1545 | 143 | 1644 | 384 | 1370 | 111 | 1164 | 1319 | 135 | 940 | 617 | 2246 | 455 | 849 | 1539 | 178 | 407 | 219 | 589 | 1013 | 278 | 2112 | 154 | 199 | 3836 | 847 | 782 | 1312 | 1665 | 623 | 1167 | 450 | 1720 | 196 | 434 | 864 | 114 | 224 | 133 | 1290 | 2139 | 132 | 77 | 63 | 208 | 25 | 1149 | 1270 | 309 | 431 | 51 | 68 | 599 |
GCF_029338395.1 | NZ_CP119812 | NZ_CP119812.1 | Halorussus caseinilyticus strain DT72 plasmid unnamed3; complete sequence. | 31264 | 29247 | 46068 | 44380 | 0 | 150959 | 0.21 | 0.19 | 0.31 | 0.29 | 0 | 0.6 | 0.9357 | 0.052 | 0.9494 | 1.971 | 63 | 52 | 115 | 22948 | 16792 | 32825 | 31910 | 0 | 104475 | 0.23 | 0.17 | 0.31 | 0.3 | 0 | 0.6 | 0.8806 | 0.2632 | 0.782 | 1.9368 | 207 | 59 | 51 | 110 | 22412 | 16264 | 32246 | 31327 | 0 | 102249 | 0.23 | 0.17 | 0.31 | 0.3 | 0 | 0.61 | 0.8802 | 0.2656 | 0.7804 | 1.9352 | 207 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 395 | 420 | 180 | 243 | 428 | 1495 | 247 | 326 | 298 | 339 | 201 | 1189 | 131 | 1174 | 252 | 1020 | 111 | 776 | 911 | 114 | 510 | 422 | 1513 | 438 | 643 | 1028 | 126 | 244 | 196 | 467 | 740 | 253 | 1408 | 95 | 221 | 2718 | 546 | 542 | 811 | 1053 | 445 | 776 | 424 | 1250 | 130 | 341 | 567 | 72 | 138 | 123 | 849 | 1392 | 107 | 91 | 53 | 219 | 33 | 741 | 914 | 241 | 399 | 35 | 41 | 477 |
GCF_029338395.1 | NZ_CP119813 | NZ_CP119813.1 | Halorussus caseinilyticus strain DT72 plasmid unnamed4; complete sequence. | 31445 | 32593 | 41099 | 40097 | 0 | 145234 | 0.22 | 0.22 | 0.28 | 0.28 | 0 | 0.56 | 0.9438 | 0.0303 | 0.9702 | 1.9897 | 47 | 77 | 124 | 26027 | 20097 | 30141 | 31210 | 0 | 107475 | 0.24 | 0.19 | 0.28 | 0.29 | 0 | 0.57 | 0.8973 | 0.2201 | 0.8114 | 1.9694 | 248 | 44 | 77 | 121 | 25421 | 19642 | 29328 | 30426 | 0 | 104817 | 0.24 | 0.19 | 0.28 | 0.29 | 0 | 0.57 | 0.8974 | 0.2209 | 0.8107 | 1.9696 | 193 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 418 | 587 | 254 | 386 | 686 | 1966 | 439 | 440 | 310 | 446 | 364 | 1421 | 278 | 819 | 358 | 713 | 226 | 515 | 933 | 235 | 515 | 515 | 1440 | 1014 | 802 | 682 | 222 | 295 | 283 | 521 | 868 | 493 | 1163 | 146 | 470 | 2209 | 552 | 329 | 738 | 874 | 438 | 579 | 431 | 708 | 110 | 484 | 526 | 142 | 126 | 215 | 589 | 959 | 162 | 194 | 96 | 369 | 37 | 693 | 597 | 435 | 472 | 33 | 51 | 568 |