GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_016906025.1	NZ_CP069188	NZ_CP069188.1	Haloterrigena salifodinae strain BOL5-1 chromosome; complete genome.	741780	731963	1351438	1355137	4180318	0.18	0.18	0.32	0.32	0.65	0.9305	0.008	0.992	1.9363	2112	2043	4155	647588	543717	1158327	1148024	3497656	0.19	0.16	0.33	0.33	0.65	0.8735	0.1938	0.8342	1.9138	2226	2060	1982	4042	635233	533828	1141147	1129448	3439656	0.19	0.16	0.33	0.33	0.65	0.8732	0.1943	0.834	1.9131	2190	2	2	4	0	0	0.5	0.5	0	1	1	0	0.3333	1	2	1	3	162	104	278	283	827	0.2	0.14	0.33	0.34	0	0.67	0.88	0.2072	0.8249	1.9058	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	21	33	54	752	823	1215	1326	4116	0.18	0.2	0.29	0.32	0	0.62	0.8767	0.1673	0.8539	1.9461	7	6	13	4472	3300	4677	5745	18194	0.21	0.17	0.29	0.32	0	0.61	0.9005	0.1881	0.8324	1.9465	19435	14469	3340	3595	7276	77797	6384	4930	12785	13076	3292	28041	2170	34578	3967	23599	2202	17013	33435	3888	31989	9994	56570	17814	23407	31507	2373	4858	3811	11102	42786	4232	70534	1457	2922	80839	19761	19241	27073	55208	16463	31123	5669	54458	4672	7621	20148	1447	3867	1925	26332	53991	1697	1801	1511	2700	858	24383	28949	4434	4330	974	2215	12233
GCF_016906025.1	NZ_CP069193	NZ_CP069193.1	Haloterrigena salifodinae strain BOL5-1 plasmid pHTS96; complete sequence.	19685	20418	28192	28097	96392	0.2	0.21	0.29	0.29	0.58	0.9397	0.02	0.9804	1.9795	26	58	84	19725	16068	25213	25757	86763	0.23	0.18	0.29	0.3	0.59	0.8972	0.1787	0.8431	1.9592	79	26	58	84	19725	16068	25213	25757	86763	0.23	0.18	0.29	0.3	0.59	0.8972	0.1787	0.8431	1.9592	79	0	0	0	NA	NA	NA	NA	NA	NA	NA	0	0	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	351	488	164	268	386	1757	411	310	300	400	245	1047	222	782	222	559	193	389	783	180	527	388	1204	930	771	531	147	195	258	319	880	328	1093	79	280	1787	476	350	683	796	325	515	273	638	104	350	521	96	147	183	450	795	95	175	68	308	19	650	643	311	276	24	41	435
GCF_016906025.1	NZ_CP069189	NZ_CP069189.1	Haloterrigena salifodinae strain BOL5-1 plasmid pHTS138; complete sequence.	30779	30339	38593	38319	138030	0.22	0.22	0.28	0.28	0.56	0.9468	0.0108	0.9893	1.9905	70	39	109	21431	17713	25486	27107	91737	0.24	0.2	0.27	0.29	0.56	0.8983	0.2019	0.826	1.9664	80	66	39	105	21117	17378	24946	26574	90015	0.24	0.2	0.27	0.29	0.56	0.8987	0.1969	0.8298	1.9673	80	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	578	449	228	282	493	1605	394	372	296	439	297	1098	239	840	266	701	157	446	784	229	551	431	1123	973	645	566	166	212	269	489	1025	323	1097	131	300	1562	469	312	698	718	384	461	320	742	133	443	486	132	141	202	536	947	109	152	83	257	23	505	606	283	278	33	49	447
GCF_016906025.1	NZ_CP069190	NZ_CP069190.1	Haloterrigena salifodinae strain BOL5-1 plasmid pHTS171; complete sequence.	30826	30606	54767	55285	171484	0.18	0.18	0.32	0.32	0.64	0.9217	0.0083	0.9917	1.9412	83	74	157	24916	20809	44915	44171	134811	0.19	0.16	0.33	0.32	0.65	0.8731	0.1883	0.8407	1.9168	90	82	72	154	24392	20203	43881	43164	131640	0.19	0.16	0.33	0.32	0.65	0.8729	0.1895	0.8398	1.9163	89	0	0	0	NA	NA	NA	NA	NA	NA	NA	0	0	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	646	478	108	153	301	2861	253	213	518	424	120	1188	80	1424	155	925	77	635	1163	154	1212	396	2071	741	837	1250	90	186	159	454	1578	167	2746	38	107	3019	793	697	962	2129	653	1098	233	1981	168	328	749	58	161	88	1118	2048	71	68	58	122	33	1029	1327	169	167	36	85	523
GCF_016906025.1	NZ_CP069191	NZ_CP069191.1	Haloterrigena salifodinae strain BOL5-1 plasmid pHTS220; complete sequence.	41037	42335	69013	68012	220397	0.19	0.19	0.31	0.31	0.62	0.9379	0.0229	0.9774	1.9567	85	87	172	32834	27533	53948	54405	168720	0.2	0.17	0.31	0.32	0.63	0.8829	0.1727	0.8485	1.9342	72	83	85	168	32117	26971	52898	53383	165369	0.2	0.17	0.31	0.32	0.64	0.8825	0.1736	0.8477	1.9337	68	0	0	0	NA	NA	NA	NA	NA	NA	NA	0	0	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	998	611	205	195	449	3359	336	316	583	788	240	1485	132	1842	225	1201	111	920	1681	198	1318	561	2664	965	1141	1296	160	233	221	689	2189	272	3013	113	170	3573	1078	783	1457	2041	786	1290	315	2275	215	489	1032	94	177	133	1280	2555	88	98	94	183	40	1178	1566	240	302	45	88	747
GCF_016906025.1	NZ_CP069192	NZ_CP069192.1	Haloterrigena salifodinae strain BOL5-1 plasmid pHTS280.6; complete sequence.	52895	53989	86831	86904	280619	0.19	0.19	0.31	0.31	0.62	0.9334	0.0107	0.9894	1.9586	99	99	198	42747	34724	68855	68990	215316	0.2	0.17	0.32	0.32	0.63	0.8851	0.1765	0.846	1.9352	60	98	98	196	42574	34595	68673	68817	214659	0.2	0.17	0.32	0.32	0.63	0.8853	0.1765	0.846	1.9346	56	0	0	0	NA	NA	NA	NA	NA	NA	NA	0	0	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1371	866	252	250	584	4449	414	376	823	1064	284	1814	164	2471	291	1881	130	1119	2200	213	1716	735	3191	1269	1601	1843	178	328	259	918	2918	329	3863	128	239	4774	1318	1106	2006	2726	1100	1508	429	2993	323	589	1304	122	269	161	1646	3135	110	103	114	183	43	1332	2087	307	331	49	108	745