GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_000025325.1	NC_013743	NC_013743.1	Haloterrigena turkmenica DSM 5511; complete sequence.	661307	667447	1280974	1279310	3889038	0.17	0.17	0.33	0.33	0.66	0.9241	0.0053	0.9948	1.9264	1869	1915	3784	588801	494095	1101282	1090696	3274874	0.18	0.15	0.33	0.33	0.66	0.8704	0.1917	0.836	1.9073	1878	1818	1868	3686	578287	485677	1085047	1073478	3222489	0.18	0.15	0.33	0.33	0.66	0.8701	0.1921	0.8358	1.9066	1858	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	1	2	149	94	268	274	785	0.19	0.12	0.34	0.35	0	0.69	0.8741	0.2506	0.7903	1.878	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	31	19	50	689	756	1105	1211	3761	0.18	0.2	0.29	0.32	0	0.62	0.8825	0.1694	0.8518	1.9469	6	4	10	3368	2473	3526	4309	13676	0.22	0.17	0.3	0.32	0	0.62	0.8936	0.2154	0.8076	1.9435	17981	12565	2416	2702	5519	75918	4906	3635	11834	11947	2326	24111	1452	33772	3311	21548	1418	16482	31431	3024	31583	8886	54673	15451	21782	30276	1611	3974	3026	10142	40725	2578	68942	919	1848	77853	18765	18816	25412	53500	15479	30132	4614	52487	4101	5717	18928	1169	3740	1576	25226	53274	1338	1102	1240	1859	779	23392	27657	3641	3028	773	2134	11717
GCF_000025325.1	NC_013744	NC_013744.1	Haloterrigena turkmenica DSM 5511 plasmid pHTUR01; complete sequence.	135222	136081	212665	214527	698495	0.19	0.19	0.3	0.31	0.61	0.9305	0.0075	0.9925	1.9638	286	308	594	112263	93639	171657	176760	554319	0.21	0.17	0.3	0.31	0.62	0.8857	0.1721	0.8493	1.9438	288	281	301	582	110470	92064	168934	173968	545436	0.21	0.17	0.3	0.31	0.62	0.8856	0.1708	0.8502	1.9438	288	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	3346	2216	956	941	1822	10856	1442	1143	1940	2331	901	5536	589	5824	933	3972	486	3017	5342	732	4065	2232	8588	3804	3715	4091	599	944	945	2658	6980	970	9615	519	760	11324	3376	2407	4355	6304	2551	3790	1292	6796	722	1742	3306	377	752	603	3930	8026	392	413	344	720	135	3504	4942	1033	1029	135	312	2390
GCF_000025325.1	NC_013745	NC_013745.1	Haloterrigena turkmenica DSM 5511 plasmid pHTUR02; complete sequence.	84094	82384	123285	123885	413648	0.2	0.2	0.3	0.3	0.6	0.9429	0.0127	0.9874	1.9723	156	151	307	60033	49477	89394	90427	289331	0.21	0.18	0.3	0.31	0.61	0.89	0.1882	0.8364	1.9472	113	151	148	299	59045	48672	88139	89186	285042	0.21	0.18	0.3	0.31	0.61	0.8902	0.1886	0.8362	1.947	114	NA	NA	NA	NA	NA	NA	NA	0	0	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1803	1217	442	493	884	5690	709	675	1071	1408	593	2648	367	3035	503	2361	272	1557	2773	410	2255	1142	4103	1987	2191	2280	312	499	519	1332	3780	554	4757	251	478	6060	1747	1352	2492	3283	1381	1898	645	3495	411	913	1630	224	380	331	2038	3820	201	223	160	442	77	1651	2508	538	545	72	155	990
GCF_000025325.1	NC_013746	NC_013746.1	Haloterrigena turkmenica DSM 5511 plasmid pHTUR03; complete sequence.	39943	41897	49444	49497	180781	0.22	0.23	0.27	0.27	0.55	0.9489	0.0244	0.9761	1.9933	62	106	168	24136	20244	28313	29019	101712	0.24	0.2	0.27	0.28	0.56	0.8965	0.1975	0.8287	1.9721	69	58	100	158	23349	19538	27337	28008	98232	0.24	0.2	0.27	0.28	0.56	0.8967	0.1954	0.8304	1.9726	69	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	571	450	275	387	611	1751	543	458	297	412	319	1212	261	797	319	623	211	536	736	272	567	513	1300	1071	756	656	192	242	307	462	1068	500	1085	155	433	1701	581	341	636	798	391	484	361	710	146	527	477	128	168	253	557	831	156	186	93	421	38	530	581	305	378	40	80	498
GCF_000025325.1	NC_013747	NC_013747.1	Haloterrigena turkmenica DSM 5511 plasmid pHTUR04; complete sequence.	30787	30066	55359	55731	171943	0.18	0.17	0.32	0.32	0.65	0.9179	0.0152	0.985	1.9375	80	76	156	24878	20593	45606	44985	136062	0.19	0.15	0.33	0.33	0.66	0.871	0.1949	0.8351	1.9115	88	78	75	153	24504	20047	44672	44118	133341	0.19	0.15	0.33	0.33	0.66	0.8709	0.1938	0.8359	1.9113	86	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	625	481	112	122	261	2969	232	165	487	396	104	1183	64	1495	167	895	73	636	1155	146	1256	368	2175	759	845	1280	80	162	158	457	1602	144	2812	39	96	3160	795	732	982	2170	670	1127	223	2017	154	317	762	60	175	92	1124	2166	67	49	63	102	37	1074	1323	187	136	36	80	566
GCF_000025325.1	NC_013748	NC_013748.1	Haloterrigena turkmenica DSM 5511 plasmid pHTUR05; complete sequence.	14059	14397	21431	21175	71062	0.2	0.2	0.3	0.3	0.6	0.9339	0.0179	0.9823	1.9712	44	51	95	13711	10437	18375	18539	61062	0.22	0.17	0.3	0.31	0.61	0.8815	0.216	0.8143	1.9425	216	44	50	94	13674	10406	18302	18467	60849	0.22	0.17	0.3	0.31	0.61	0.8823	0.2173	0.8132	1.943	212	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	318	284	91	121	248	1215	165	238	187	320	184	688	116	644	148	472	92	295	489	109	356	227	825	496	392	479	93	115	159	186	622	165	812	54	172	1339	330	272	468	686	263	485	243	794	81	214	283	40	109	90	442	694	55	54	30	151	23	356	473	148	239	20	51	273
GCF_000025325.1	NC_013749	NC_013749.1	Haloterrigena turkmenica DSM 5511 plasmid pHTUR06; complete sequence.	3020	3599	4742	4454	15815	0.19	0.23	0.3	0.28	0.58	0.9305	0.1188	0.8892	1.978	7	11	18	3100	2087	3530	3874	12591	0.24	0.18	0.28	0.31	0.59	0.8854	0.2609	0.7819	1.9566	38	7	11	18	3100	2087	3530	3874	12591	0.24	0.18	0.28	0.31	0.59	0.8854	0.2609	0.7819	1.9566	38	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	69	81	25	46	55	235	47	37	41	64	35	138	31	120	34	105	28	71	79	25	49	66	142	137	69	98	25	23	32	83	106	30	119	21	40	274	66	49	100	107	71	96	84	129	18	56	98	18	12	16	69	127	6	24	6	39	3	60	96	33	53	2	13	66