GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_N Number of 'N' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_009831575.1	NZ_WUUT01000001	NZ_WUUT01000001.1	Halovenus carboxidivorans strain WSH3 Ga0216322_101; whole genome shotgun sequence.	191320	193583	351412	338803	1	1075119	0.18	0.18	0.33	0.32	0.64	0.93	0.0241	0.9762	1.9409	554	518	1072	178573	147080	297791	307061	1	930506	0.19	0.16	0.31	0.33	0.64	0.8792	0.2063	0.8235	1.9215	527	516	482	998	169315	137622	279878	288593	1	875409	0.2	0.16	0.31	0.33	0.64	0.8791	0.208	0.8221	1.9215	492	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	10	5	15	203	231	333	369	1136	0.18	0.2	0.29	0.32	0	0.62	0.8797	0.1667	0.8547	1.9493	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	4961	2960	899	1107	2857	19676	1667	1679	3434	3159	808	7970	893	8183	1319	5927	693	5457	7922	1309	9402	3226	12810	4659	7389	8087	664	1515	1155	3282	10922	1033	16743	463	1626	19111	5144	4225	6751	12568	4559	6543	2148	11904	933	1691	5988	726	1259	494	5415	12802	406	393	502	977	189	7232	7884	1411	1142	213	596	2740
GCF_009831575.1	NZ_WUUT01000002	NZ_WUUT01000002.1	Halovenus carboxidivorans strain WSH3 Ga0216322_102; whole genome shotgun sequence.	96937	92174	166898	170121	0	526130	0.18	0.18	0.32	0.32	0.64	0.9257	0.0347	0.966	1.942	274	225	499	89884	72528	145811	151979	0	460202	0.2	0.16	0.31	0.33	0.64	0.8813	0.2062	0.8238	1.9255	235	263	213	476	87572	70335	141589	147663	0	447159	0.2	0.16	0.31	0.33	0.64	0.8818	0.2079	0.8226	1.9257	216	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	6	1	7	89	93	169	184	535	0.17	0.17	0.32	0.34	0	0.66	0.8532	0.1689	0.8526	1.9135	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2617	1727	437	512	1455	10381	810	808	1792	1615	351	4178	386	4223	670	3175	330	2816	4307	627	4819	1709	6652	2423	4082	4027	360	737	576	1834	5699	490	8114	181	739	9684	2589	2027	3600	6133	2212	3102	1098	5904	469	773	3048	349	647	269	3058	6346	166	218	284	404	91	3663	4093	733	546	109	276	1503
GCF_009831575.1	NZ_WUUT01000003	NZ_WUUT01000003.1	Halovenus carboxidivorans strain WSH3 Ga0216322_103; whole genome shotgun sequence.	87658	89350	167137	161001	1	505147	0.17	0.18	0.33	0.32	0.65	0.9224	0.0283	0.9722	1.9342	260	236	496	83187	67954	142331	146871	1	440344	0.19	0.16	0.32	0.33	0.65	0.8776	0.2016	0.828	1.9175	219	242	227	469	79891	64994	136576	140947	1	422409	0.19	0.16	0.32	0.33	0.65	0.8776	0.2027	0.8272	1.9176	202	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2	2	149	91	256	293	789	0.18	0.12	0.32	0.37	0	0.7	0.8749	0.2812	0.7738	1.8671	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	6	3	9	111	132	207	233	683	0.16	0.19	0.3	0.34	0	0.64	0.8749	0.1741	0.8495	1.9266	3	3	1090	819	1166	1439	4514	0.23	0.18	0.28	0.32	0	0.59	0.8969	0.2035	0.8183	1.9669	2464	1442	364	441	1339	9727	760	702	1637	1418	267	3581	348	4086	567	3055	231	2660	3913	584	4408	1537	6345	2121	3550	4016	255	644	523	1585	5490	379	8549	97	638	9252	2505	1966	3156	6290	2284	3121	898	6122	381	753	2973	288	587	186	2803	6156	132	138	227	399	80	3607	4000	653	435	104	285	1298
GCF_009831575.1	NZ_WUUT01000004	NZ_WUUT01000004.1	Halovenus carboxidivorans strain WSH3 Ga0216322_104; whole genome shotgun sequence.	68089	70208	114027	112469	1	364794	0.19	0.19	0.31	0.31	0.62	0.9267	0.0222	0.9781	1.9573	171	188	359	66617	52291	97206	102513	1	318628	0.21	0.17	0.3	0.32	0.63	0.8821	0.2137	0.8188	1.9277	362	157	176	333	62472	48559	90760	95745	1	297537	0.21	0.16	0.3	0.32	0.63	0.8816	0.2132	0.819	1.9272	308	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2	2	4	61	56	83	90	290	0.21	0.19	0.29	0.31	0	0.6	0.8881	0.0944	0.9121	1.9699	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1650	1197	451	515	1215	6606	669	732	1185	980	466	3226	377	2554	567	2140	375	1784	2591	539	2853	1190	4002	2024	2643	2532	347	554	509	1334	3742	462	5126	274	733	6249	1628	1319	2170	3829	1505	1903	898	3623	296	708	1886	387	446	221	1835	3939	220	194	276	409	57	2242	2498	497	534	66	210	989
GCF_009831575.1	NZ_WUUT01000005	NZ_WUUT01000005.1	Halovenus carboxidivorans strain WSH3 Ga0216322_105; whole genome shotgun sequence.	57083	56373	98899	101098	0	313453	0.18	0.18	0.32	0.32	0.64	0.9277	0.0173	0.9829	1.9442	160	174	334	55518	44986	88828	93544	0	282876	0.2	0.16	0.31	0.33	0.64	0.8812	0.2075	0.8236	1.9281	216	150	168	318	52774	42471	83936	88374	0	267555	0.2	0.16	0.31	0.33	0.64	0.881	0.2116	0.8205	1.928	138	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	1	2	27	31	45	43	146	0.18	0.21	0.31	0.29	0	0.6	0.8895	0.0896	0.9163	1.9662	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1675	992	294	357	987	5842	526	538	1024	894	235	2549	259	2597	459	1947	190	1721	2498	357	2784	1192	3980	1515	2365	2317	185	430	306	1192	3513	301	5043	101	516	5624	1524	1207	1973	3445	1317	1762	679	3591	252	517	1893	197	400	133	1761	3861	135	108	155	324	57	2105	2439	468	368	75	186	948
GCF_009831575.1	NZ_WUUT01000006	NZ_WUUT01000006.1	Halovenus carboxidivorans strain WSH3 Ga0216322_106; whole genome shotgun sequence.	34395	34865	63472	60558	0	193290	0.18	0.18	0.33	0.31	0.64	0.9153	0.0303	0.9703	1.941	100	105	205	32917	26650	53727	56044	0	169338	0.19	0.16	0.32	0.33	0.65	0.8756	0.2196	0.8136	1.917	95	95	96	191	31525	25323	50898	53192	0	160938	0.2	0.16	0.31	0.33	0.65	0.8756	0.222	0.8118	1.9173	91	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2	4	6	76	81	134	151	442	0.17	0.18	0.3	0.34	0	0.65	0.8696	0.1603	0.8567	1.9252	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	901	601	189	203	478	3572	296	367	610	561	193	1621	164	1496	278	1062	135	1029	1390	241	1724	578	2294	822	1324	1459	132	301	249	635	1852	225	2989	98	294	3607	904	774	1211	2344	760	1184	391	2097	189	344	1109	137	258	104	962	2382	79	79	126	188	33	1354	1513	255	258	50	108	483
GCF_009831575.1	NZ_WUUT01000007	NZ_WUUT01000007.1	Halovenus carboxidivorans strain WSH3 Ga0216322_107; whole genome shotgun sequence.	25590	25745	43721	43603	0	138659	0.18	0.19	0.32	0.31	0.63	0.9269	0.0044	0.9956	1.9508	57	62	119	21672	17873	34648	35847	0	110040	0.2	0.17	0.31	0.32	0.63	0.8845	0.1876	0.8363	1.9356	29	52	57	109	19956	16335	31548	32598	0	100437	0.2	0.17	0.31	0.32	0.63	0.8849	0.1871	0.8364	1.9376	29	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	489	312	146	165	383	2019	252	194	372	412	113	877	95	992	192	711	86	652	903	160	1007	375	1516	609	885	892	84	190	193	471	1214	125	1723	54	212	2116	690	435	849	1133	478	662	243	1135	128	233	746	140	158	94	686	1375	55	60	113	128	17	894	1001	185	153	23	69	405
GCF_009831575.1	NZ_WUUT01000008	NZ_WUUT01000008.1	Halovenus carboxidivorans strain WSH3 Ga0216322_108; whole genome shotgun sequence.	13545	12843	23502	24211	0	74101	0.18	0.17	0.32	0.33	0.64	0.9201	0.0415	0.9594	1.9391	35	41	76	12164	10506	20442	21418	0	64530	0.19	0.16	0.31	0.33	0.64	0.879	0.211	0.8215	1.9245	81	34	38	72	11510	9912	19260	20248	0	60930	0.19	0.16	0.31	0.33	0.65	0.8786	0.2159	0.8178	1.9235	69	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	0	1	16	19	19	21	75	0.21	0.25	0.25	0.28	0	0.53	0.9044	0.1357	0.8734	1.9934	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	347	219	60	67	240	1363	123	109	261	212	45	542	56	562	90	396	38	408	652	93	704	270	962	310	570	528	43	109	67	292	775	67	1257	23	115	1197	329	242	477	827	309	428	131	788	41	107	413	59	83	25	396	936	17	16	33	67	11	484	522	95	53	20	41	188
GCF_009831575.1	NZ_WUUT01000009	NZ_WUUT01000009.1	Halovenus carboxidivorans strain WSH3 Ga0216322_109; whole genome shotgun sequence.	5552	6588	11157	10935	0	34232	0.16	0.19	0.33	0.32	0.65	0.9133	0.0954	0.9114	1.9362	13	25	38	5815	4540	9363	9955	0	29673	0.2	0.16	0.31	0.33	0.65	0.8809	0.2135	0.8197	1.923	12	13	22	35	5717	4461	9206	9785	0	29169	0.2	0.15	0.31	0.34	0.65	0.8821	0.2246	0.8107	1.9219	12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	2	2	30	30	53	55	168	0.18	0.18	0.32	0.33	0	0.64	0.8616	0.0185	0.9818	1.9401	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	200	124	31	25	86	675	52	42	113	107	20	284	14	274	39	232	20	175	267	39	321	120	409	144	247	250	16	56	34	118	408	26	551	9	47	639	177	156	223	352	160	200	62	422	24	41	213	19	31	12	195	413	9	13	16	17	5	265	283	36	25	10	20	110
GCF_009831575.1	NZ_WUUT01000010	NZ_WUUT01000010.1	Halovenus carboxidivorans strain WSH3 Ga0216322_110; whole genome shotgun sequence.	3823	3743	6528	6897	0	20991	0.18	0.18	0.31	0.33	0.64	0.9147	0.0381	0.9628	1.9427	9	13	22	3339	2762	5586	5803	0	17490	0.2	0.16	0.31	0.33	0.64	0.8819	0.2504	0.7898	1.9212	12	8	13	21	3179	2595	5232	5416	0	16422	0.2	0.16	0.31	0.33	0.64	0.8819	0.2592	0.7828	1.9228	12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	114	88	13	12	43	371	35	33	61	40	13	161	11	146	26	105	14	104	152	26	184	75	257	71	158	153	7	30	15	59	264	18	313	5	24	324	93	69	89	255	79	142	43	226	12	29	121	11	23	9	106	220	6	3	8	10	3	120	152	32	21	10	8	49