Assembly Assembly | Locus_ID Locus_ID | Version Version | Definition Sequence description | bp_chromo_A Total number of 'A' nucleotides in the whole sequence | bp_chromo_T Total number of 'T' nucleotides in the whole sequence | bp_chromo_C Total number of 'C' nucleotides in the whole sequence | bp_chromo_G Total number of 'G' nucleotides in the whole sequence | bp_chromo_N Total number of 'N' nucleotides in the whole sequence | bp_chromo_tot Total number of nucleotides in the whole sequence | fr_chromo_A Frequency of 'A' nucleotides in the whole sequence | fr_chromo_T Frequency of 'T' nucleotides in the whole sequence | fr_chromo_C Frequency of 'C' nucleotides in the whole sequence | fr_chromo_G Frequency of 'G' nucleotides in the whole sequence | fr_chromo_N Frequency of 'N' nucleotides in the whole sequence | GC_chromo Percentage of āGā + āCā nucleotides in the whole sequence | topo_entropy_chromo Topological entropy of the whole sequence | chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence | chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee | shannon_chromo Shannon entropy of the whole sequence | n_gene_pos Number of genes in the positive strand | n_gene_neg Number of genes in the negative strand | n_gene_tot Total number of genes in the chromosome | bp_gene_A Number of 'A' bases in total genes | bp_gene_T Number of 'T' bases in total genes | bp_gene_C Number of 'C' bases in total genes | bp_gene_G Number of 'G' bases in total genes | bp_gene_N Number of 'N' bases in total genes | bp_gene_tot Total number of bases in total genes | fr_gene_A Frequency of 'A' bases among total gene bases | fr_gene_T Frequency of 'T' bases among total gene bases | fr_gene_C Frequency of 'C' bases among total gene bases | fr_gene_G Frequency of 'G' bases among total gene bases | fr_gene_N Frequency of 'N' bases among total gene bases | GC_gene Percentage of 'G' and 'C' bases in total genes | topo_entropy_gene Topological entropy calculated from total gene sequences | chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes | chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes | shannon_gene Shannon entropy score for total genes | bp_gene_overlap_tot Number of bases overlapping between genes on two strands | n_cds_pos Number of CDS in the positive strand | n_cds_neg Number of CDS in the negative strand | n_cds_tot Total number of CDS in the chromosome | bp_cds_A Number of 'A' bases in total CDS (coding sequences) | bp_cds_T Number of 'T' bases in total CDS | bp_cds_C Number of 'C' bases in total CDS | bp_cds_G Number of 'G' bases in total CDS | bp_cds_N Number of 'N' bases in total CDS | bp_cds_tot Total bases in total CDS | fr_cds_A Frequency of 'A' bases among total CDS bases | fr_cds_T Frequency of 'T' bases among total CDS bases | fr_cds_C Frequency of 'C' bases among total CDS bases | fr_cds_G Frequency of 'G' bases among total CDS bases | fr_cds_N Frequency of 'N' bases among total CDS bases | GC_cds Percentage of 'G' and 'C' bases in total CDS | topo_entropy_cds Topological entropy calculated from total CDS sequences | chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS | chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS | shannon_cds Shannon entropy score for total CDS | bp_cds_overlap_tot Number of bases overlapping between CDS on two strands | bp_cds_intron_A Number of 'A' bases in total introns between CDS | bp_cds_intron_T Number of 'T' bases in total introns between CDS | bp_cds_intron_C Number of 'C' bases in total introns between CDS | bp_cds_intron_G Number of 'G' bases in total introns between CDS | bp_cds_intron_N Number of 'N' bases in total introns between CDS | bp_cds_intron_tot Total bases in total introns between CDS | fr_cds_intron_A Frequency of 'A' bases in total introns between CDS | fr_cds_intron_T Frequency of 'T' bases in total introns between CDS | fr_cds_intron_C Frequency of 'C' bases in total introns between CDS | fr_cds_intron_G Frequency of 'G' bases in total introns between CDS | fr_cds_intron_N Frequency of 'N' bases in total introns between CDS | GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS | topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS | chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS | chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS | shannon_cds_intron Shannon entropy score for total introns between CDS | bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands | n_ncRNA_pos Number of ncRNA in the positive strand | n_ncRNA_neg Number of ncRNA in the negative strand | n_ncRNA_tot Total number of ncRNA in the chromosome | bp_ncRNA_A Number of 'A' bases in total ncRNA | bp_ncRNA_T bp_ncRNA_T | bp_ncRNA_C Number of 'C' bases in total ncRNA | bp_ncRNA_G Number of 'G' bases in total ncRNA | bp_ncRNA_N Number of 'N' bases in total ncRNA | bp_ncRNA_tot Total bases in total ncRNA | fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases | fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases | fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases | fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases | fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases | GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA | topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences | chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA | chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA | shannon_ncRNA Shannon entropy score for total ncRNA | bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands | bp_nc_intron_A Number of 'A' bases in total introns between ncRNA | bp_nc_intron_T Number of 'T' bases in total introns between ncRNA | bp_nc_intron_C Number of 'C' bases in total introns between ncRNA | bp_nc_intron_G Number of 'G' bases in total introns between ncRNA | bp_nc_intron_N Number of 'N' bases in total introns between ncRNA | bp_nc_intron_tot Total bases in total introns between ncRNA | fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA | fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA | fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA | fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA | fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA | GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA | topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA | chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA | chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA | shannon_nc_intron Shannon entropy score for total introns between ncRNA | bp_nc_intron_overlap_tot Number of bases overlapping between introns between ncRNA on two strands | n_tRNA_pos Number of tRNA in the positive strand | n_tRNA_neg Number of tRNA in the negative strand | n_tRNA_tot Total number of tRNA in the chromosome | bp_tRNA_A Number of 'A' bases in total tRNA | bp_tRNA_T Number of 'T' bases in total tRNA | bp_tRNA_C Number of 'C' bases in total tRNA | bp_tRNA_G Number of 'G' bases in total tRNA | bp_tRNA_N Number of 'N' bases in total tRNA | bp_tRNA_tot Total bases in total tRNA | fr_tRNA_A Frequency of 'A' bases among total tRNA bases | fr_tRNA_T Frequency of 'T' bases among total tRNA bases | fr_tRNA_C Frequency of 'C' bases among total tRNA bases | fr_tRNA_G Frequency of 'G' bases among total tRNA bases | fr_tRNA_N Frequency of 'N' bases among total tRNA bases | GC_tRNA Percentage of 'G' and 'C' bases in total tRNA | topo_entropy_tRNA Topological entropy calculated from total tRNA sequences | chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA | chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA | shannon_tRNA Shannon entropy score for total tRNA | bp_tRNA_overlap_tot Number of bases overlapping between tRNA on two strands | n_rRNA_pos Number of rRNA in the positive strand | n_rRNA_neg Number of rRNA in the negative strand | n_rRNA_tot Total number of rRNA in the chromosome | bp_rRNA_A Number of 'A' bases in total rRNA | bp_rRNA_T Number of 'T' bases in total rRNA | bp_rRNA_C Number of 'C' bases in total rRNA | bp_rRNA_G Number of 'G' bases in total rRNA | bp_rRNA_N Number of 'N' bases in total rRNA | bp_rRNA_tot Total bases in total rRNA | fr_rRNA_A Frequency of 'A' bases among total rRNA bases | fr_rRNA_T Frequency of 'T' bases among total rRNA bases | fr_rRNA_C Frequency of 'C' bases among total rRNA bases | fr_rRNA_G Frequency of 'G' bases among total rRNA bases | fr_rRNA_N Frequency of 'N' bases among total rRNA bases | GC_rRNA Percentage of 'G' and 'C' bases in total rRNA | topo_entropy_rRNA Topological entropy calculated from total rRNA sequences | chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA | chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA | shannon_rRNA Shannon entropy score for total rRNA | bp_rRNA_overlap_tot Number of bases overlapping between rRNA on two strands | ATG ATG | AAG AAG | GTA GTA | ACT ACT | GCA GCA | GAG GAG | GCT GCT | ATT ATT | TCC TCC | TGG TGG | AAT AAT | GAA GAA | TCA TCA | ACG ACG | AGT AGT | AAC AAC | TCT TCT | GTG GTG | TTC TTC | TTT TTT | CTG CTG | GGT GGT | CTC CTC | GAT GAT | CAG CAG | ACC ACC | CTA CTA | TTG TTG | TAT TAT | GGA GGA | ATC ATC | CTT CTT | GTC GTC | ATA ATA | ACA ACA | GAC GAC | CAC CAC | CCC CCC | TAC TAC | GCC GCC | AGC AGC | CGC CGC | AAA AAA | GGC GGC | TGC TGC | GTT GTT | GGG GGG | AGA AGA | TGT TGT | CAT CAT | TCG TCG | GCG GCG | TTA TTA | CCT CCT | AGG AGG | CCA CCA | TAG TAG | CGG CGG | CCG CCG | CGT CGT | CAA CAA | TAA TAA | TGA TGA | CGA CGA |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
GCF_026410925.1 | NZ_CP112972 | NZ_CP112972.1 | Halovenus salina strain JCM 30072 chromosome; complete genome. | 651470 | 657392 | 1010314 | 1009242 | 0 | 3328418 | 0.2 | 0.2 | 0.3 | 0.3 | 0 | 0.61 | 0.9419 | 0.0051 | 0.995 | 1.9669 | 1672 | 1638 | 3310 | 616877 | 512409 | 896936 | 919710 | 0 | 2945932 | 0.21 | 0.18 | 0.3 | 0.31 | 0 | 0.61 | 0.8914 | 0.1913 | 0.8358 | 1.9466 | 2162 | 1626 | 1583 | 3209 | 605125 | 502390 | 881672 | 903482 | 0 | 2892669 | 0.21 | 0.18 | 0.3 | 0.31 | 0 | 0.61 | 0.8915 | 0.1918 | 0.8354 | 1.9465 | 2141 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 2 | 0 | 2 | 145 | 88 | 208 | 245 | 0 | 686 | 0.21 | 0.13 | 0.3 | 0.36 | 0 | 0.66 | 0.8783 | 0.3074 | 0.7502 | 1.9004 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 19 | 28 | 47 | 626 | 682 | 1072 | 1170 | 0 | 3550 | 0.18 | 0.19 | 0.3 | 0.33 | 0 | 0.63 | 0.876 | 0.1614 | 0.8582 | 1.9371 | 0 | 0 | 3 | 3 | 1080 | 817 | 1158 | 1459 | 0 | 4514 | 0.23 | 0.18 | 0.27 | 0.32 | 0 | 0.59 | 0.9053 | 0.22 | 0.8041 | 1.9671 | 0 | 16941 | 10592 | 4481 | 5973 | 19181 | 60469 | 10267 | 10278 | 8165 | 10455 | 4441 | 28054 | 4846 | 23348 | 5965 | 19872 | 4231 | 17574 | 25286 | 6577 | 25009 | 13688 | 42584 | 15564 | 24511 | 23970 | 2951 | 5770 | 5163 | 12349 | 27695 | 7886 | 52272 | 3839 | 12157 | 62906 | 16174 | 12585 | 20735 | 35692 | 13734 | 19021 | 8326 | 36237 | 2043 | 10662 | 16801 | 3181 | 5044 | 3031 | 17993 | 30766 | 1741 | 3063 | 2163 | 7955 | 834 | 17478 | 18982 | 7753 | 5250 | 748 | 1627 | 9294 |
GCF_026410925.1 | NZ_CP112973 | NZ_CP112973.1 | Halovenus salina strain JCM 30072 plasmid unnamed1; complete sequence. | 42319 | 42733 | 51648 | 52063 | 0 | 188763 | 0.22 | 0.23 | 0.27 | 0.28 | 0 | 0.55 | 0.946 | 0.0089 | 0.9912 | 1.9929 | 77 | 81 | 158 | 29751 | 24145 | 34469 | 35562 | 0 | 123927 | 0.24 | 0.19 | 0.28 | 0.29 | 0 | 0.57 | 0.9009 | 0.1877 | 0.8372 | 1.9735 | 107 | 70 | 80 | 150 | 28806 | 23280 | 33369 | 34293 | 0 | 119748 | 0.24 | 0.19 | 0.28 | 0.29 | 0 | 0.56 | 0.9012 | 0.1879 | 0.8372 | 1.9736 | 108 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 1 | 0 | 1 | 18 | 13 | 22 | 23 | 0 | 76 | 0.24 | 0.17 | 0.29 | 0.3 | 0 | 0.59 | 0.8477 | 0.3032 | 0.7517 | 1.9481 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 561 | 571 | 286 | 403 | 826 | 2001 | 592 | 579 | 364 | 482 | 454 | 1634 | 379 | 940 | 345 | 865 | 279 | 640 | 893 | 383 | 786 | 658 | 1495 | 1192 | 909 | 769 | 177 | 364 | 322 | 549 | 1187 | 530 | 1556 | 157 | 677 | 2122 | 681 | 400 | 816 | 980 | 449 | 667 | 539 | 923 | 156 | 559 | 632 | 156 | 214 | 253 | 673 | 974 | 122 | 201 | 91 | 440 | 34 | 719 | 703 | 439 | 522 | 37 | 84 | 524 |
GCF_026410925.1 | NZ_CP112974 | NZ_CP112974.1 | Halovenus salina strain JCM 30072 plasmid unnamed2; complete sequence. | 31335 | 31711 | 35771 | 36927 | 0 | 135744 | 0.23 | 0.23 | 0.26 | 0.27 | 0 | 0.54 | 0.9471 | 0.0219 | 0.9784 | 1.9962 | 47 | 50 | 97 | 22623 | 18867 | 24400 | 26154 | 0 | 92044 | 0.25 | 0.2 | 0.26 | 0.28 | 0 | 0.55 | 0.9025 | 0.2068 | 0.8203 | 1.9771 | 104 | 45 | 48 | 93 | 21948 | 18326 | 23738 | 25397 | 0 | 89409 | 0.25 | 0.21 | 0.26 | 0.28 | 0 | 0.55 | 0.9036 | 0.2087 | 0.8188 | 1.978 | 100 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 1 | 0 | 1 | 18 | 19 | 33 | 45 | 0 | 115 | 0.16 | 0.17 | 0.29 | 0.39 | 0 | 0.68 | 0.8287 | 0.2883 | 0.7593 | 1.882 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 445 | 339 | 232 | 433 | 753 | 1437 | 502 | 495 | 259 | 367 | 381 | 1254 | 311 | 659 | 363 | 538 | 194 | 538 | 577 | 296 | 647 | 515 | 1033 | 1029 | 773 | 552 | 136 | 334 | 349 | 484 | 846 | 422 | 1128 | 154 | 570 | 1387 | 393 | 293 | 575 | 639 | 321 | 348 | 353 | 648 | 71 | 490 | 480 | 121 | 166 | 185 | 429 | 647 | 122 | 154 | 75 | 438 | 20 | 428 | 445 | 314 | 426 | 20 | 53 | 417 |
GCF_026410925.1 | NZ_CP112975 | NZ_CP112975.1 | Halovenus salina strain JCM 30072 plasmid unnamed3; complete sequence. | 26316 | 27278 | 31602 | 31812 | 0 | 117008 | 0.22 | 0.23 | 0.27 | 0.27 | 0 | 0.54 | 0.9477 | 0.0213 | 0.9791 | 1.9948 | 38 | 60 | 98 | 18126 | 15169 | 20180 | 21766 | 0 | 75241 | 0.24 | 0.2 | 0.27 | 0.29 | 0 | 0.56 | 0.8995 | 0.2011 | 0.8254 | 1.9639 | 244 | 37 | 57 | 94 | 17826 | 14846 | 19750 | 21327 | 0 | 73749 | 0.24 | 0.2 | 0.27 | 0.29 | 0 | 0.56 | 0.8999 | 0.2019 | 0.8245 | 1.9648 | 243 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 1 | 1 | 18 | 19 | 33 | 45 | 0 | 115 | 0.16 | 0.17 | 0.29 | 0.39 | 0 | 0.68 | 0.8287 | 0.2883 | 0.7593 | 1.882 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 340 | 348 | 191 | 337 | 520 | 1206 | 395 | 363 | 217 | 317 | 285 | 944 | 264 | 542 | 277 | 456 | 192 | 461 | 519 | 204 | 513 | 371 | 873 | 835 | 566 | 461 | 119 | 289 | 261 | 356 | 564 | 313 | 836 | 132 | 455 | 1195 | 346 | 234 | 517 | 530 | 310 | 367 | 352 | 510 | 98 | 399 | 453 | 115 | 150 | 161 | 411 | 632 | 125 | 147 | 71 | 293 | 25 | 434 | 404 | 257 | 309 | 21 | 48 | 347 |