GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_034331145.1	NZ_JAXQGE010000001	NZ_JAXQGE010000001.1	MAG: Methanobacterium sp. isolate IBPM_KMB_004 NODE_10_length_247536_cov_17.737564; whole genome shotgun sequence.	73731	75802	48669	49134	200	247536	0.3	0.31	0.2	0.2	0.4	0.9373	0.0186	0.9816	1.9677	102	136	238	62936	52644	39581	45279	200440	0.32	0.26	0.19	0.23	0.42	0.8985	0.2287	0.8035	1.9607	121	84	114	198	50695	41871	31739	36462	160767	0.32	0.26	0.19	0.23	0.42	0.8984	0.2299	0.8025	1.9609	69	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	4	4	53	60	81	96	290	0.18	0.21	0.28	0.33	0	0.61	0.8922	0.1857	0.8387	1.9544	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1452	1040	866	910	1168	1031	863	1681	734	440	1397	2919	727	117	754	1140	588	1249	1090	1027	1431	1299	625	2226	1072	1235	431	476	903	1480	1186	907	413	1555	661	794	418	648	947	1191	367	201	2622	511	286	1354	583	523	353	612	103	165	1169	643	469	701	32	297	172	401	543	134	32	225
GCF_034331145.1	NZ_JAXQGE010000002	NZ_JAXQGE010000002.1	MAG: Methanobacterium sp. isolate IBPM_KMB_004 NODE_1_length_664682_cov_19.469471; whole genome shotgun sequence.	204611	201998	126645	130728	700	664682	0.31	0.3	0.19	0.2	0.39	0.942	0.0223	0.978	1.9626	396	264	660	176853	144632	104749	121282	547516	0.33	0.26	0.19	0.22	0.41	0.8957	0.2452	0.7915	1.9505	507	350	230	580	155269	126177	91447	105715	478608	0.33	0.26	0.19	0.22	0.41	0.8955	0.2485	0.7889	1.9506	451	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	0	1	70	66	77	103	316	0.22	0.21	0.24	0.33	0	0.57	0.9048	0.1739	0.8452	1.9771	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	5	1	6	83	92	137	152	464	0.18	0.2	0.3	0.32	0	0.63	0.8795	0.1525	0.8616	1.9414	3	0	3	1136	1020	1016	1426	4598	0.22	0.23	0.23	0.31	0	0.55	0.9111	0.2767	0.7624	1.976	4222	2966	2525	2809	3587	2801	2557	5186	2042	1531	4708	8773	2236	319	2282	3415	1852	3371	3015	3418	3643	3791	1846	6640	2866	3487	1444	1450	2934	4400	3479	2375	1232	4794	2194	2473	1224	1842	2767	3164	1167	507	8223	1300	693	3962	1722	1792	1029	1817	298	495	4004	1901	1349	1978	96	871	530	1102	1835	349	134	722
GCF_034331145.1	NZ_JAXQGE010000003	NZ_JAXQGE010000003.1	MAG: Methanobacterium sp. isolate IBPM_KMB_004 NODE_20_length_126225_cov_17.426337; whole genome shotgun sequence.	38147	39527	24115	24436	0	126225	0.3	0.31	0.19	0.19	0.38	0.9371	0.0244	0.976	1.9611	53	57	110	32976	27451	20248	22345	103020	0.33	0.27	0.19	0.22	0.4	0.8953	0.2339	0.8019	1.952	78	52	49	101	29863	24727	18327	20131	93048	0.33	0.27	0.18	0.22	0.41	0.8945	0.238	0.7991	1.9519	78	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	827	557	494	524	701	483	535	1023	429	297	950	1582	430	63	448	809	361	615	659	630	786	788	382	1297	540	773	272	275	545	888	706	532	258	967	491	499	202	381	575	627	249	102	1470	224	101	734	322	285	176	339	60	72	761	305	222	367	16	157	99	219	332	60	25	118
GCF_034331145.1	NZ_JAXQGE010000004	NZ_JAXQGE010000004.1	MAG: Methanobacterium sp. isolate IBPM_KMB_004 NODE_2_length_505822_cov_20.037579; whole genome shotgun sequence.	154422	153971	100028	97101	300	505822	0.31	0.3	0.2	0.19	0.39	0.9407	0.0163	0.9839	1.9644	242	269	511	133387	108742	79417	93982	415528	0.32	0.26	0.19	0.23	0.42	0.8977	0.2453	0.7901	1.9554	208	209	222	431	113354	92820	67365	80056	353595	0.33	0.26	0.19	0.23	0.41	0.8982	0.2453	0.7901	1.9561	177	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	5	7	12	151	189	262	315	917	0.16	0.21	0.29	0.34	0	0.63	0.8895	0.2595	0.7794	1.9296	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	3397	2288	1923	1817	2772	2121	2007	3784	1601	929	3034	6642	1590	228	1586	2321	1349	2642	2213	2423	3035	2885	1321	4796	2168	2492	1032	1168	1966	3488	2617	2079	928	3770	1464	1789	888	1372	1809	2560	836	362	6090	912	457	2998	1350	1318	737	1317	203	416	2815	1357	967	1367	65	582	356	849	1308	255	111	543
GCF_034331145.1	NZ_JAXQGE010000005	NZ_JAXQGE010000005.1	MAG: Methanobacterium sp. isolate IBPM_KMB_004 NODE_30_length_101215_cov_21.253608; whole genome shotgun sequence.	30437	29934	19969	20875	0	101215	0.3	0.3	0.2	0.21	0.4	0.9391	0.0305	0.97	1.9728	49	44	93	26926	21655	17374	19275	85230	0.32	0.26	0.19	0.23	0.43	0.9002	0.2361	0.7962	1.9646	42	41	40	81	21529	17418	13690	15574	68211	0.32	0.26	0.19	0.23	0.42	0.8991	0.2357	0.7968	1.964	42	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	1	1	10	11	25	28	74	0.14	0.15	0.34	0.38	0	0.72	0.8115	0.3098	0.7348	1.8346	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	670	416	350	383	552	420	396	662	331	169	542	1235	332	41	329	475	223	560	490	396	598	532	248	913	470	559	203	198	348	667	494	347	163	698	270	359	151	316	406	518	152	75	1113	191	122	565	255	239	184	219	46	67	481	266	192	298	8	104	90	183	276	48	25	108
GCF_034331145.1	NZ_JAXQGE010000006	NZ_JAXQGE010000006.1	MAG: Methanobacterium sp. isolate IBPM_KMB_004 NODE_3_length_489195_cov_22.359478; whole genome shotgun sequence.	145438	144961	100451	98045	300	489195	0.3	0.3	0.21	0.2	0.41	0.9432	0.0138	0.9864	1.974	199	281	480	128294	104802	83098	94644	410838	0.31	0.26	0.2	0.23	0.43	0.9008	0.2241	0.8062	1.964	316	179	253	432	115131	94447	73940	85491	369009	0.32	0.26	0.19	0.23	0.42	0.9007	0.2268	0.8037	1.9637	312	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	1	1	92	61	68	86	307	0.3	0.2	0.22	0.28	0	0.5	0.9118	0.3195	0.7269	1.9802	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	5	5	10	146	155	207	228	736	0.2	0.21	0.28	0.31	0	0.59	0.893	0.1426	0.8697	1.9684	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	3683	2243	2036	1881	2817	2210	2138	3590	1742	1049	2842	6912	1509	241	1550	2527	1239	2985	2546	2320	3448	2901	1483	4931	2440	3008	1087	1186	1863	3668	2770	1950	958	3668	1388	2149	1103	1558	2156	2896	909	388	5871	1118	594	3007	1425	1267	895	1264	238	447	2610	1451	1071	1565	67	667	400	919	1210	277	88	584
GCF_034331145.1	NZ_JAXQGE010000007	NZ_JAXQGE010000007.1	MAG: Methanobacterium sp. isolate IBPM_KMB_004 NODE_56_length_63432_cov_20.663537; whole genome shotgun sequence.	19689	21150	11187	11306	100	63432	0.31	0.33	0.18	0.18	0.35	0.9242	0.0411	0.9602	1.9372	20	44	64	16768	13901	8646	9663	48978	0.34	0.29	0.17	0.2	0.37	0.8936	0.2302	0.8028	1.9323	32	16	38	54	13841	11589	7004	7910	40344	0.34	0.29	0.17	0.2	0.37	0.8927	0.2297	0.8042	1.9316	28	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	317	230	243	224	201	202	188	490	188	133	499	730	193	33	226	307	174	210	268	382	273	269	130	494	233	255	124	195	364	284	317	236	68	443	184	179	80	133	230	171	118	17	825	91	52	308	121	167	100	164	29	29	454	126	124	148	12	50	39	71	204	30	12	57
GCF_034331145.1	NZ_JAXQGE010000008	NZ_JAXQGE010000008.1	MAG: Methanobacterium sp. isolate IBPM_KMB_004 NODE_62_length_57105_cov_20.207555; whole genome shotgun sequence.	18630	18714	9904	9857	0	57105	0.33	0.33	0.17	0.17	0.35	0.9237	0.0046	0.9954	1.9305	32	25	57	14170	11401	7216	8340	41127	0.35	0.28	0.17	0.21	0.37	0.8868	0.2682	0.7747	1.9192	20	27	19	46	11521	9398	6174	7128	34221	0.35	0.28	0.17	0.21	0.37	0.8876	0.2773	0.7684	1.923	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	2	2	27	32	39	46	144	0.19	0.22	0.27	0.32	0	0.59	0.8957	0.1678	0.8465	1.9694	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	321	219	169	244	233	197	181	397	135	124	397	622	183	29	198	279	155	153	216	277	236	265	109	502	190	263	92	108	284	284	217	164	83	331	169	147	63	108	182	184	97	26	596	82	41	287	102	153	78	125	29	29	309	133	89	114	1	40	32	75	167	37	8	47
GCF_034331145.1	NZ_JAXQGE010000009	NZ_JAXQGE010000009.1	MAG: Methanobacterium sp. isolate IBPM_KMB_004 NODE_9_length_283037_cov_20.477946; whole genome shotgun sequence.	84841	85155	57483	55358	200	283037	0.3	0.3	0.2	0.2	0.4	0.9428	0.0207	0.9797	1.9699	125	157	282	74597	60683	46827	53594	235701	0.32	0.26	0.19	0.23	0.43	0.8961	0.238	0.7954	1.9591	116	104	140	244	64824	52925	41054	47075	205878	0.32	0.26	0.19	0.23	0.42	0.897	0.2338	0.7989	1.961	95	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	8	3	11	141	167	250	292	850	0.17	0.2	0.29	0.34	0	0.64	0.8732	0.213	0.8148	1.931	0	1	1	25	26	36	35	122	0.2	0.21	0.3	0.29	0	0.58	0.887	0.0337	0.9669	1.9803	2016	1262	1135	1253	1678	1218	1262	2130	944	604	1721	3841	918	172	880	1505	741	1551	1376	1261	1841	1736	727	2608	1282	1703	606	684	1047	2084	1411	1052	568	2063	871	1140	555	865	1149	1471	450	210	3193	567	310	1685	743	762	538	690	137	223	1460	855	558	994	39	352	263	487	686	154	51	288