GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	fr_chromo_N Frequency of 'N' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	fr_cds_N Frequency of 'N' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_003814835.1	NZ_RKRG01000001	NZ_RKRG01000001.1	Methanobrevibacter gottschalkii DSM 11977 Ga0244664_11; whole genome shotgun sequence.	257237	251645	112086	107924	0	728892	0.35	0.35	0.15	0.15	0	0.3	0.9219	0.0299	0.9706	1.8834	335	399	734	236961	206611	83686	119844	647102	0.36	0.32	0.13	0.19	0.32	0.8772	0.2936	0.7556	1.8739	568	297	342	639	210223	183313	74262	106153	573951	0.37	0.32	0.13	0.18	0	0.31	0.8768	0.2958	0.7537	1.8714	397	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	1	1	97	67	48	69	281	0.35	0.24	0.17	0.25	0	0.42	0.9083	0.3624	0.6932	1.9558	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	5	18	23	315	371	480	563	1729	0.18	0.21	0.28	0.32	0	0.6	0.88	0.2156	0.8134	1.95	1	0	1	52	73	40	59	224	0.23	0.33	0.18	0.26	0	0.44	0.9044	0.3599	0.6951	1.967	4775	1516	3956	4910	5781	1693	4909	12051	999	1208	9426	12275	3816	165	2775	2362	3722	1001	2149	5958	410	5516	471	10153	830	923	887	2057	5324	5445	2340	3314	764	4641	3718	1909	761	368	1588	573	668	113	13474	888	499	6833	926	3910	2114	2342	204	463	9211	2706	866	2820	125	53	586	954	3453	415	99	156
GCF_003814835.1	NZ_RKRG01000002	NZ_RKRG01000002.1	Methanobrevibacter gottschalkii DSM 11977 Ga0244664_12; whole genome shotgun sequence.	206406	209986	79272	100251	7	595922	0.35	0.35	0.13	0.17	0	0.3	0.922	0.1255	0.8868	1.8798	470	157	627	194741	168420	68087	97801	529049	0.37	0.31	0.13	0.19	0.32	0.8773	0.2928	0.7559	1.8746	675	430	145	575	182126	157234	63416	91258	494034	0.37	0.32	0.13	0.19	0	0.31	0.8773	0.2943	0.7549	1.8734	499	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	0	1	85	99	51	81	316	0.27	0.31	0.16	0.26	0	0.42	0.9024	0.3034	0.7441	1.9622	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	8	0	8	114	138	170	200	622	0.18	0.22	0.27	0.32	0	0.59	0.8847	0.2123	0.8155	1.9564	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	3997	1691	3191	3887	4673	1715	3652	10000	942	1165	8425	10456	3412	160	2201	2083	2979	898	1909	5342	626	4319	419	9444	1060	785	868	2170	5293	4141	1958	2865	721	3802	3169	1766	597	329	1383	551	656	129	11870	875	527	5550	719	3321	1528	2189	211	409	7450	2026	880	2142	113	76	632	882	2843	369	93	144
GCF_003814835.1	NZ_RKRG01000003	NZ_RKRG01000003.1	Methanobrevibacter gottschalkii DSM 11977 Ga0244664_13; whole genome shotgun sequence.	117556	123734	44744	56178	0	342212	0.34	0.36	0.13	0.16	0	0.29	0.9206	0.1389	0.8733	1.8719	224	96	320	105192	95186	37573	52888	290839	0.36	0.32	0.13	0.19	0.31	0.8738	0.3032	0.7489	1.8715	144	202	88	290	89334	80856	32039	45568	247797	0.36	0.32	0.13	0.19	0	0.31	0.8733	0.3062	0.7464	1.8713	126	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	0	1	15	19	17	21	72	0.21	0.26	0.24	0.29	0	0.53	0.9099	0.2229	0.7995	1.9888	2	0	2	63	114	54	88	319	0.19	0.37	0.17	0.27	0	0.44	0.8824	0.5514	0.5783	1.923	1885	755	1696	2302	2361	736	1992	5089	451	624	4756	4722	1745	80	1324	1137	1551	493	1009	2721	249	2492	197	4234	462	486	401	1093	2643	2239	979	1391	368	1984	1751	709	272	151	684	289	343	56	5415	472	289	2978	375	1397	875	985	94	190	3739	1035	377	1006	68	30	277	409	1387	167	54	78
GCF_003814835.1	NZ_RKRG01000004	NZ_RKRG01000004.1	Methanobrevibacter gottschalkii DSM 11977 Ga0244664_14; whole genome shotgun sequence.	45436	40698	19724	16890	0	122748	0.37	0.33	0.16	0.14	0	0.3	0.9165	0.1324	0.876	1.8764	54	72	126	40853	34907	14218	19846	109824	0.37	0.32	0.13	0.18	0.31	0.8729	0.3014	0.7502	1.8667	135	50	68	118	37939	32375	13181	18484	101979	0.37	0.32	0.13	0.18	0	0.31	0.8729	0.3044	0.7478	1.8657	89	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	0	1	12	17	19	24	72	0.17	0.24	0.26	0.33	0	0.6	0.8809	0.2887	0.7488	1.958	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	831	272	717	748	1052	306	817	2123	205	212	1695	2216	696	35	506	452	574	180	407	1068	89	861	113	1729	149	187	159	417	1039	994	463	645	136	823	704	341	106	79	273	113	120	21	2508	136	88	1129	152	681	313	374	44	81	1674	448	145	461	28	7	85	204	635	76	14	37
GCF_003814835.1	NZ_RKRG01000005	NZ_RKRG01000005.1	Methanobrevibacter gottschalkii DSM 11977 Ga0244664_15; whole genome shotgun sequence.	28594	30758	11101	13743	0	84196	0.34	0.37	0.13	0.16	0	0.3	0.9144	0.1428	0.8687	1.8721	56	24	80	26301	23814	9178	13322	72615	0.36	0.33	0.13	0.19	0.31	0.8781	0.2905	0.757	1.8718	57	50	23	73	24159	21774	8391	12087	66411	0.37	0.33	0.12	0.18	0	0.31	0.8775	0.2858	0.7603	1.8696	53	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	0	1	18	26	18	25	87	0.21	0.3	0.21	0.29	0	0.49	0.9044	0.3446	0.7062	1.9783	547	190	441	545	656	216	478	1393	107	139	1343	1291	481	30	332	255	472	128	250	767	44	651	53	1132	105	100	101	282	712	631	260	385	92	505	458	192	66	36	180	70	93	23	1527	111	60	798	108	347	240	267	33	66	1018	284	88	303	12	7	75	97	385	50	11	18
GCF_003814835.1	NZ_RKRG01000006	NZ_RKRG01000006.1	Methanobrevibacter gottschalkii DSM 11977 Ga0244664_16; whole genome shotgun sequence.	1107	1009	1125	721	97	4059	0.27	0.25	0.28	0.18	0.02	0.45	0.9222	0.2652	0.7762	1.9663	0	2	2	922	985	696	1088	3691	0.25	0.26	0.19	0.3	0.49	0.9219	0.2425	0.7967	1.9808	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	2	2	922	985	696	1088	3691	0.25	0.26	0.19	0.3	0	0.49	0.9219	0.2425	0.7967	1.9808	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0