| Assembly Assembly | Locus_ID Locus_ID | Version Version | Definition Sequence description | bp_chromo_A Total number of 'A' nucleotides in the whole sequence | bp_chromo_T Total number of 'T' nucleotides in the whole sequence | bp_chromo_C Total number of 'C' nucleotides in the whole sequence | bp_chromo_G Total number of 'G' nucleotides in the whole sequence | bp_chromo_N Total number of 'N' nucleotides in the whole sequence | bp_chromo_tot Total number of nucleotides in the whole sequence | fr_chromo_A Frequency of 'A' nucleotides in the whole sequence | fr_chromo_T Frequency of 'T' nucleotides in the whole sequence | fr_chromo_C Frequency of 'C' nucleotides in the whole sequence | fr_chromo_G Frequency of 'G' nucleotides in the whole sequence | fr_chromo_N Frequency of 'N' nucleotides in the whole sequence | GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence | topo_entropy_chromo Topological entropy of the whole sequence | chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence | chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee | shannon_chromo Shannon entropy of the whole sequence | n_gene_pos Number of genes in the positive strand | n_gene_neg Number of genes in the negative strand | n_gene_tot Total number of genes in the chromosome | bp_gene_A Number of 'A' bases in total genes | bp_gene_T Number of 'T' bases in total genes | bp_gene_C Number of 'C' bases in total genes | bp_gene_G Number of 'G' bases in total genes | bp_gene_N Number of 'N' bases in total genes | bp_gene_tot Total number of bases in total genes | fr_gene_A Frequency of 'A' bases among total gene bases | fr_gene_T Frequency of 'T' bases among total gene bases | fr_gene_C Frequency of 'C' bases among total gene bases | fr_gene_G Frequency of 'G' bases among total gene bases | fr_gene_N Frequency of 'N' bases among total gene bases | GC_gene Percentage of 'G' and 'C' bases in total genes | topo_entropy_gene Topological entropy calculated from total gene sequences | chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes | chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes | shannon_gene Shannon entropy score for total genes | bp_gene_overlap_tot Number of bases overlapping between genes on two strands | n_cds_pos Number of CDS in the positive strand | n_cds_neg Number of CDS in the negative strand | n_cds_tot Total number of CDS in the chromosome | bp_cds_A Number of 'A' bases in total CDS (coding sequences) | bp_cds_T Number of 'T' bases in total CDS | bp_cds_C Number of 'C' bases in total CDS | bp_cds_G Number of 'G' bases in total CDS | bp_cds_N Number of 'N' bases in total CDS | bp_cds_tot Total bases in total CDS | fr_cds_A Frequency of 'A' bases among total CDS bases | fr_cds_T Frequency of 'T' bases among total CDS bases | fr_cds_C Frequency of 'C' bases among total CDS bases | fr_cds_G Frequency of 'G' bases among total CDS bases | fr_cds_N Frequency of 'N' bases among total CDS bases | GC_cds Percentage of 'G' and 'C' bases in total CDS | topo_entropy_cds Topological entropy calculated from total CDS sequences | chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS | chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS | shannon_cds Shannon entropy score for total CDS | bp_cds_overlap_tot Number of bases overlapping between CDS on two strands | bp_cds_intron_A Number of 'A' bases in total introns between CDS | bp_cds_intron_T Number of 'T' bases in total introns between CDS | bp_cds_intron_C Number of 'C' bases in total introns between CDS | bp_cds_intron_G Number of 'G' bases in total introns between CDS | bp_cds_intron_N Number of 'N' bases in total introns between CDS | bp_cds_intron_tot Total bases in total introns between CDS | fr_cds_intron_A Frequency of 'A' bases in total introns between CDS | fr_cds_intron_T Frequency of 'T' bases in total introns between CDS | fr_cds_intron_C Frequency of 'C' bases in total introns between CDS | fr_cds_intron_G Frequency of 'G' bases in total introns between CDS | fr_cds_intron_N Frequency of 'N' bases in total introns between CDS | GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS | topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS | chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS | chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS | shannon_cds_intron Shannon entropy score for total introns between CDS | bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands | n_ncRNA_pos Number of ncRNA in the positive strand | n_ncRNA_neg Number of ncRNA in the negative strand | n_ncRNA_tot Total number of ncRNA in the chromosome | bp_ncRNA_A Number of 'A' bases in total ncRNA | bp_ncRNA_T bp_ncRNA_T | bp_ncRNA_C Number of 'C' bases in total ncRNA | bp_ncRNA_G Number of 'G' bases in total ncRNA | bp_ncRNA_N Number of 'N' bases in total ncRNA | bp_ncRNA_tot Total bases in total ncRNA | fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases | fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases | fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases | fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases | fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases | GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA | topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences | chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA | chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA | shannon_ncRNA Shannon entropy score for total ncRNA | bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands | bp_nc_intron_A Number of 'A' bases in total introns between ncRNA | bp_nc_intron_T Number of 'T' bases in total introns between ncRNA | bp_nc_intron_C Number of 'C' bases in total introns between ncRNA | bp_nc_intron_G Number of 'G' bases in total introns between ncRNA | bp_nc_intron_N Number of 'N' bases in total introns between ncRNA | bp_nc_intron_tot Total bases in total introns between ncRNA | fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA | fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA | fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA | fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA | fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA | GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA | topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA | chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA | chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA | shannon_nc_intron Shannon entropy score for total introns between ncRNA | bp_nc_intron_overlap_tot Number of bases overlapping between introns between ncRNA on two strands | n_tRNA_pos Number of tRNA in the positive strand | n_tRNA_neg Number of tRNA in the negative strand | n_tRNA_tot Total number of tRNA in the chromosome | bp_tRNA_A Number of 'A' bases in total tRNA | bp_tRNA_T Number of 'T' bases in total tRNA | bp_tRNA_C Number of 'C' bases in total tRNA | bp_tRNA_G Number of 'G' bases in total tRNA | bp_tRNA_N Number of 'N' bases in total tRNA | bp_tRNA_tot Total bases in total tRNA | fr_tRNA_A Frequency of 'A' bases among total tRNA bases | fr_tRNA_T Frequency of 'T' bases among total tRNA bases | fr_tRNA_C Frequency of 'C' bases among total tRNA bases | fr_tRNA_G Frequency of 'G' bases among total tRNA bases | fr_tRNA_N Frequency of 'N' bases among total tRNA bases | GC_tRNA Percentage of 'G' and 'C' bases in total tRNA | topo_entropy_tRNA Topological entropy calculated from total tRNA sequences | chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA | chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA | shannon_tRNA Shannon entropy score for total tRNA | bp_tRNA_overlap_tot Number of bases overlapping between tRNA on two strands | n_rRNA_pos Number of rRNA in the positive strand | n_rRNA_neg Number of rRNA in the negative strand | n_rRNA_tot Total number of rRNA in the chromosome | bp_rRNA_A Number of 'A' bases in total rRNA | bp_rRNA_T Number of 'T' bases in total rRNA | bp_rRNA_C Number of 'C' bases in total rRNA | bp_rRNA_G Number of 'G' bases in total rRNA | bp_rRNA_N Number of 'N' bases in total rRNA | bp_rRNA_tot Total bases in total rRNA | fr_rRNA_A Frequency of 'A' bases among total rRNA bases | fr_rRNA_T Frequency of 'T' bases among total rRNA bases | fr_rRNA_C Frequency of 'C' bases among total rRNA bases | fr_rRNA_G Frequency of 'G' bases among total rRNA bases | fr_rRNA_N Frequency of 'N' bases among total rRNA bases | GC_rRNA Percentage of 'G' and 'C' bases in total rRNA | topo_entropy_rRNA Topological entropy calculated from total rRNA sequences | chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA | chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA | shannon_rRNA Shannon entropy score for total rRNA | bp_rRNA_overlap_tot Number of bases overlapping between rRNA on two strands | ATG ATG | AAG AAG | GTA GTA | ACT ACT | GCA GCA | GAG GAG | GCT GCT | ATT ATT | TCC TCC | TGG TGG | AAT AAT | GAA GAA | TCA TCA | ACG ACG | AGT AGT | AAC AAC | TCT TCT | GTG GTG | TTC TTC | TTT TTT | CTG CTG | GGT GGT | CTC CTC | GAT GAT | CAG CAG | ACC ACC | CTA CTA | TTG TTG | TAT TAT | GGA GGA | ATC ATC | CTT CTT | GTC GTC | ATA ATA | ACA ACA | GAC GAC | CAC CAC | CCC CCC | TAC TAC | GCC GCC | AGC AGC | CGC CGC | AAA AAA | GGC GGC | TGC TGC | GTT GTT | GGG GGG | AGA AGA | TGT TGT | CAT CAT | TCG TCG | GCG GCG | TTA TTA | CCT CCT | AGG AGG | CCA CCA | TAG TAG | CGG CGG | CCG CCG | CGT CGT | CAA CAA | TAA TAA | TGA TGA | CGA CGA |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| GCF_000024625.1 | NC_013407 | NC_013407.1 | Methanocaldococcus vulcanius M7; complete sequence. | 597348 | 599072 | 276329 | 273580 | 0 | 1746329 | 0.34 | 0.34 | 0.16 | 0.16 | 0 | 0.31 | 0.9274 | 0.0064 | 0.9936 | 1.8987 | 837 | 920 | 1757 | 573147 | 423996 | 185489 | 305170 | 0 | 1487802 | 0.38 | 0.28 | 0.13 | 0.21 | 0 | 0.33 | 0.8773 | 0.4192 | 0.6672 | 1.8703 | 1542 | 766 | 836 | 1602 | 538675 | 398029 | 171733 | 283953 | 0 | 1392390 | 0.39 | 0.29 | 0.12 | 0.2 | 0 | 0.33 | 0.8774 | 0.4256 | 0.6626 | 1.8694 | 1418 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 2 | 2 | 116 | 98 | 158 | 204 | 0 | 576 | 0.2 | 0.17 | 0.27 | 0.35 | 0 | 0.62 | 0.901 | 0.2139 | 0.8083 | 1.9408 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 12 | 25 | 37 | 459 | 501 | 934 | 982 | 0 | 2876 | 0.16 | 0.18 | 0.32 | 0.34 | 0 | 0.66 | 0.8674 | 0.1858 | 0.8406 | 1.9064 | 0 | 2 | 4 | 6 | 1938 | 1463 | 2541 | 3250 | 0 | 9192 | 0.2 | 0.15 | 0.3 | 0.35 | 0 | 0.65 | 0.8948 | 0.26 | 0.774 | 1.9198 | 0 | 10140 | 11739 | 7488 | 5661 | 12786 | 14143 | 7210 | 18953 | 1936 | 3320 | 16474 | 24786 | 6737 | 1790 | 5232 | 8473 | 5155 | 3335 | 3962 | 15266 | 1687 | 5064 | 2404 | 20943 | 2532 | 2792 | 4706 | 7349 | 14248 | 18436 | 6933 | 5990 | 2442 | 22209 | 9542 | 4525 | 2317 | 1399 | 5287 | 2568 | 2073 | 68 | 36234 | 1704 | 2006 | 18560 | 4488 | 12165 | 4120 | 4592 | 1000 | 2110 | 21360 | 4113 | 4029 | 9042 | 151 | 154 | 1257 | 307 | 4428 | 1235 | 225 | 750 |
| GCF_000024625.1 | NC_013408 | NC_013408.1 | Methanocaldococcus vulcanius M7 plasmid pMETVU01; complete sequence. | 3169 | 2577 | 2340 | 2618 | 0 | 10704 | 0.3 | 0.24 | 0.22 | 0.24 | 0 | 0.46 | 0.9158 | 0.1591 | 0.8535 | 1.9909 | 9 | 2 | 11 | 2283 | 1721 | 1508 | 2078 | 0 | 7590 | 0.32 | 0.22 | 0.2 | 0.26 | 0 | 0.46 | 0.8881 | 0.3723 | 0.702 | 1.9578 | 16 | 9 | 2 | 11 | 2283 | 1721 | 1508 | 2078 | 0 | 7590 | 0.32 | 0.22 | 0.2 | 0.26 | 0 | 0.46 | 0.8881 | 0.3723 | 0.702 | 1.9578 | 16 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 45 | 157 | 34 | 26 | 9 | 197 | 52 | 68 | 17 | 38 | 23 | 84 | 3 | 21 | 29 | 46 | 17 | 28 | 34 | 50 | 30 | 19 | 49 | 67 | 36 | 57 | 94 | 31 | 41 | 35 | 40 | 71 | 23 | 68 | 3 | 63 | 21 | 29 | 51 | 66 | 33 | 11 | 86 | 40 | 2 | 71 | 44 | 31 | 6 | 18 | 3 | 13 | 41 | 32 | 92 | 21 | 3 | 27 | 42 | 9 | 21 | 2 | 6 | 4 |
| GCF_000024625.1 | NC_013409 | NC_013409.1 | Methanocaldococcus vulcanius M7 plasmid pMETVU02; complete sequence. | 1521 | 1768 | 859 | 556 | 0 | 4704 | 0.32 | 0.38 | 0.18 | 0.12 | 0 | 0.3 | 0.9002 | 0.2892 | 0.7538 | 1.8694 | 1 | 1 | 2 | 1223 | 1016 | 369 | 695 | 0 | 3303 | 0.37 | 0.33 | 0.11 | 0.18 | 0 | 0.3 | 0.8788 | 0.2829 | 0.7695 | 1.8566 | 0 | 1 | 1 | 2 | 1223 | 1016 | 369 | 695 | 0 | 3303 | 0.37 | 0.33 | 0.11 | 0.18 | 0 | 0.3 | 0.8788 | 0.2829 | 0.7695 | 1.8566 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 15 | 41 | 14 | 18 | 17 | 42 | 16 | 50 | 4 | 8 | 51 | 43 | 16 | 12 | 24 | 28 | 9 | 7 | 11 | 37 | 3 | 13 | 0 | 65 | 7 | 3 | 7 | 35 | 38 | 23 | 18 | 10 | 4 | 47 | 12 | 19 | 3 | 3 | 11 | 8 | 4 | 0 | 60 | 3 | 2 | 40 | 17 | 26 | 12 | 11 | 6 | 4 | 62 | 8 | 12 | 17 | 0 | 1 | 3 | 1 | 17 | 2 | 0 | 1 |