GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_004310395.1	NZ_BFAX01000001	NZ_BFAX01000001.1	Methanofervidicoccus abyssi strain HHB HHB01-1; whole genome shotgun sequence.	87771	86545	47001	47535	268852	0.33	0.32	0.17	0.18	0.35	0.9296	0.0127	0.9874	1.9355	144	142	286	79460	60123	31645	52786	224014	0.35	0.27	0.14	0.24	0.38	0.8833	0.4098	0.6724	1.9125	321	130	126	256	72486	54598	28537	48118	203739	0.36	0.27	0.14	0.23	0.37	0.8831	0.4194	0.6652	1.9116	317	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2	4	6	76	97	157	167	497	0.15	0.19	0.31	0.34	0.65	0.8848	0.163	0.8592	1.9243	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1649	3284	2309	1053	1371	3115	1026	1567	638	371	1668	2691	430	180	1136	1351	1005	842	827	1561	580	1635	781	2863	696	608	971	993	1446	2043	1089	1135	349	4198	1052	744	328	372	1341	717	140	14	3047	245	109	1611	834	1834	779	685	87	176	1932	1183	1642	842	43	27	75	76	275	174	39	29
GCF_004310395.1	NZ_BFAX01000002	NZ_BFAX01000002.1	Methanofervidicoccus abyssi strain HHB HHB01-2; whole genome shotgun sequence.	74208	73332	39866	40163	227569	0.33	0.32	0.18	0.18	0.35	0.9247	0.0096	0.9904	1.9355	117	112	229	66616	50248	26215	43932	187011	0.36	0.27	0.14	0.23	0.37	0.8862	0.4078	0.6729	1.9128	40	100	94	194	56391	42347	21784	36969	157491	0.36	0.27	0.13	0.23	0.37	0.8846	0.4212	0.6639	1.9095	39	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	1	70	61	79	104	314	0.22	0.19	0.25	0.33	0	0.58	0.906	0.2053	0.8155	1.9708	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2	1	3	42	47	77	78	244	0.18	0.2	0.31	0.3	0.62	0.8507	0.3103	0.7514	1.9176	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1133	2383	1817	877	1063	2291	822	1239	477	331	1429	2188	418	136	891	932	828	668	571	1117	432	1202	516	2413	513	494	698	733	1220	1541	746	851	326	3259	839	559	250	277	1104	538	97	10	2457	209	91	1286	691	1418	647	571	66	156	1414	870	1136	628	46	24	52	63	257	129	23	34
GCF_004310395.1	NZ_BFAX01000003	NZ_BFAX01000003.1	Methanofervidicoccus abyssi strain HHB HHB01-3; whole genome shotgun sequence.	124561	120028	66193	69434	380216	0.33	0.32	0.17	0.18	0.36	0.9303	0.0424	0.9585	1.9396	190	178	368	111026	84979	45145	74721	315871	0.34	0.27	0.15	0.24	0.39	0.8867	0.3903	0.6858	1.9152	130	163	142	305	97401	74173	38584	64345	274503	0.36	0.27	0.14	0.23	0.37	0.8865	0.4047	0.6752	1.9137	120	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	1	62	41	60	75	238	0.26	0.17	0.25	0.32	0	0.57	0.8809	0.315	0.7306	1.9688	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	5	13	18	235	267	429	453	1384	0.17	0.19	0.31	0.33	0.64	0.8825	0.182	0.842	1.9321	4	4	1043	783	1280	1608	4714	0.21	0.17	0.3	0.32	0	0.62	0.903	0.1952	0.8244	1.947	2178	4284	3014	1534	1744	4060	1387	2263	797	641	2237	3789	622	240	1451	1755	1332	1187	1127	2106	759	1979	1003	4060	905	792	1247	1323	2034	2597	1495	1616	554	5379	1438	1035	430	462	1846	928	209	21	4167	392	169	2264	1116	2547	1130	916	161	266	2559	1537	2037	1205	51	57	154	100	495	210	45	63
GCF_004310395.1	NZ_BFAX01000004	NZ_BFAX01000004.1	Methanofervidicoccus abyssi strain HHB HHB02; whole genome shotgun sequence.	118168	114058	60419	64205	356850	0.33	0.32	0.17	0.18	0.35	0.9305	0.0481	0.9531	1.933	174	137	311	106274	79901	41933	68490	296598	0.36	0.27	0.14	0.23	0.37	0.8884	0.3956	0.6804	1.9148	313	162	114	276	96126	72386	37836	61798	268146	0.36	0.27	0.14	0.23	0.37	0.8885	0.3996	0.6773	1.9135	190	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	4	5	70	73	120	117	380	0.18	0.19	0.32	0.31	0.62	0.8934	0.1043	0.9031	1.9512	1	1	88	80	98	131	397	0.22	0.2	0.25	0.33	0	0.58	0.8899	0.1917	0.8286	1.9735	2072	3831	2846	1489	1875	3826	1357	2167	787	672	2422	3696	695	223	1443	1801	1236	1051	1135	2087	731	1912	936	3895	880	795	1255	1349	2095	2726	1345	1443	481	5401	1441	1033	483	459	1850	906	204	13	4374	328	162	2076	1176	2277	1083	895	139	206	2625	1498	1878	1228	50	53	146	97	462	184	42	59
GCF_004310395.1	NZ_BFAX01000005	NZ_BFAX01000005.1	Methanofervidicoccus abyssi strain HHB HHB03; whole genome shotgun sequence.	24016	24279	13416	12949	74660	0.32	0.33	0.18	0.17	0.35	0.9262	0.0232	0.9772	1.9367	43	42	85	21489	17122	9013	14342	61966	0.34	0.28	0.15	0.23	0.38	0.8849	0.3689	0.7018	1.9192	68	39	39	78	20215	16115	8383	13430	58143	0.35	0.28	0.14	0.23	0.37	0.8844	0.3799	0.6937	1.9171	66	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2	1	3	41	47	72	81	241	0.18	0.2	0.3	0.33	0.62	0.851	0.2883	0.7574	1.9322	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	431	928	625	316	328	807	289	483	212	123	505	683	123	55	338	357	302	280	237	468	174	422	231	788	173	172	342	308	462	629	327	359	113	1225	274	189	108	130	404	232	31	2	824	73	36	451	255	506	249	223	39	62	513	320	394	215	20	13	25	19	88	44	14	13