GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	fr_cds_N Frequency of 'N' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_017875315.1	NZ_JAGGMM010000001	NZ_JAGGMM010000001.1	Methanomicrobium sp. W14 Ga0466838_01; whole genome shotgun sequence.	322336	316954	237969	238587	1115846	0.29	0.28	0.21	0.21	0.43	0.9501	0.0097	0.9904	1.9846	589	569	1158	299074	244246	197064	232672	973056	0.31	0.25	0.2	0.24	0.44	0.903	0.2326	0.7995	1.9686	1823	504	493	997	262995	213174	173079	204342	853590	0.31	0.25	0.2	0.24	0	0.44	0.9032	0.2367	0.7964	1.9688	1281	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	1	1	77	68	76	100	321	0.24	0.21	0.24	0.31	0	0.55	0.9072	0.1984	0.8216	1.9846	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	18	14	32	439	519	674	780	2412	0.18	0.21	0.28	0.32	0	0.61	0.8806	0.1996	0.8264	1.9514	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	7570	6378	5649	3077	8948	7483	3303	7877	3361	2350	5784	12971	5780	2492	2442	6314	3110	2800	4655	7047	5412	5219	3534	7701	5232	3032	891	1387	5284	7604	5509	10757	5576	9756	5829	8901	2256	2204	4920	3998	3018	1425	13549	4595	2896	6488	3939	4362	1405	2377	2612	3028	2383	4064	4259	1484	83	759	3671	1761	817	512	402	248
GCF_017875315.1	NZ_JAGGMM010000002	NZ_JAGGMM010000002.1	Methanomicrobium sp. W14 Ga0466838_02; whole genome shotgun sequence.	192516	215174	150382	161794	719866	0.27	0.3	0.21	0.22	0.43	0.9456	0.0921	0.9121	1.9856	330	346	676	181452	148068	125070	146533	601123	0.3	0.25	0.21	0.24	0.45	0.9033	0.2349	0.7983	1.9712	735	295	310	605	163103	132299	112642	132082	540126	0.31	0.25	0.2	0.24	0	0.45	0.9037	0.2363	0.7971	1.9718	628	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	0	1	63	73	71	107	314	0.2	0.23	0.23	0.34	0	0.57	0.906	0.2758	0.7633	1.9685	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	5	6	11	153	183	232	268	836	0.18	0.22	0.28	0.32	0	0.6	0.8823	0.1779	0.8422	1.957	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	4922	4322	3449	1880	5711	5309	2069	4560	2394	1451	3255	7767	3461	1737	1378	4413	1955	1826	3239	4523	3238	3199	2564	4239	3260	2090	499	765	2989	4733	3353	6941	3860	6473	3470	6251	1357	1392	3375	2980	1973	892	8092	3131	1904	3812	2689	2463	736	1268	2005	2314	1362	2356	2859	709	59	487	2252	989	392	285	261	103
GCF_017875315.1	NZ_JAGGMM010000003	NZ_JAGGMM010000003.1	Methanomicrobium sp. W14 Ga0466838_03; whole genome shotgun sequence.	182709	169820	137970	128351	618850	0.3	0.27	0.22	0.21	0.43	0.9462	0.0727	0.9299	1.985	258	312	570	157690	131109	108026	124845	521670	0.3	0.25	0.2	0.24	0.45	0.9024	0.221	0.8089	1.9686	829	235	278	513	141597	117603	96904	111800	467904	0.3	0.25	0.2	0.24	0	0.44	0.9026	0.2224	0.8078	1.9686	614	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	3	4	61	55	88	91	295	0.21	0.19	0.3	0.31	0	0.61	0.895	0.1096	0.8996	1.949	0	1	1	32	24	34	32	122	0.26	0.2	0.28	0.26	0	0.54	0.887	0.1732	0.8456	1.988	4121	3619	2980	1706	4648	4023	1799	4235	1911	1560	3278	6581	3134	1592	1265	3750	1770	1510	2880	4063	2565	2888	2133	3946	2783	1898	471	819	3028	4200	2908	5663	3193	5090	3217	5084	1206	1260	3022	2274	1639	635	6945	2774	1681	3196	2324	2012	751	1176	1720	1811	1599	2199	2172	745	29	375	2132	764	588	254	229	145
GCF_017875315.1	NZ_JAGGMM010000004	NZ_JAGGMM010000004.1	Methanomicrobium sp. W14 Ga0466838_04; whole genome shotgun sequence.	21428	23421	15639	17240	77728	0.28	0.3	0.2	0.22	0.42	0.9406	0.0931	0.911	1.9813	38	38	76	19971	16603	13146	15763	65483	0.31	0.25	0.2	0.24	0.44	0.903	0.2308	0.8016	1.9665	89	32	34	66	17097	14029	11355	13610	56091	0.31	0.25	0.2	0.24	0	0.44	0.9033	0.2344	0.7991	1.9698	73	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	0	1	12	16	21	25	74	0.16	0.22	0.28	0.34	0	0.62	0.8987	0.2298	0.795	1.9479	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	469	447	346	197	602	563	244	495	254	150	352	860	370	181	154	449	214	170	305	507	321	376	201	485	345	213	43	95	349	498	358	728	356	646	355	612	129	149	332	243	182	99	868	321	226	446	245	260	81	133	180	210	139	278	291	80	8	57	221	97	40	29	29	14
GCF_017875315.1	NZ_JAGGMM010000005	NZ_JAGGMM010000005.1	Methanomicrobium sp. W14 Ga0466838_05; whole genome shotgun sequence.	1490	1177	1128	1550	5345	0.28	0.22	0.21	0.29	0.5	0.9372	0.2749	0.7588	1.986	4	0	4	1225	982	1001	1368	4576	0.24	0.2	0.25	0.31	0.56	0.9088	0.2018	0.8199	1.9744	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	0	1	14	13	21	25	73	0.19	0.18	0.29	0.34	0	0.63	0.887	0.124	0.8843	1.9468	3	0	3	1211	969	980	1343	4503	0.26	0.21	0.24	0.29	0	0.54	0.916	0.2277	0.7984	1.9836	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GCF_017875315.1	NZ_JAGGMM010000006	NZ_JAGGMM010000006.1	Methanomicrobium sp. W14 Ga0466838_06; whole genome shotgun sequence.	1106	1168	578	762	3614	0.31	0.32	0.16	0.21	0.37	0.9155	0.1646	0.8527	1.9459	4	0	4	946	1052	526	671	3195	0.29	0.33	0.16	0.21	0.38	0.9048	0.1955	0.8258	1.9467	0	2	0	2	640	684	342	440	2106	0.3	0.32	0.16	0.21	0	0.37	0.9123	0.1864	0.8322	1.9428	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	18	11	17	12	21	7	4	36	5	5	26	33	17	7	14	7	14	5	9	24	14	17	6	31	8	5	2	10	37	20	6	21	7	22	13	12	4	2	14	10	5	0	24	9	4	21	7	6	4	6	10	4	14	16	6	3	0	0	4	0	4	0	2	0