GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	fr_cds_N Frequency of 'N' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_002153915.1	NZ_MRZU01000001	NZ_MRZU01000001.1	Methanonatronarchaeum thermophilum strain AMET1 AMET1_1; whole genome shotgun sequence.	524	474	181	327	0	1506	0.35	0.31	0.12	0.22	0.34	0.8963	0.3375	0.729	1.9006	1	1	2	387	257	160	255	1059	0.28	0.21	0.24	0.27	0.51	0.8723	0.276	0.7712	1.9278	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	1	1	14	13	25	23	75	0.19	0.17	0.33	0.31	0	0.64	0.8682	0.0787	0.9243	1.9415	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GCF_002153915.1	NZ_MRZU01000002	NZ_MRZU01000002.1	Methanonatronarchaeum thermophilum strain AMET1 AMET1_2; whole genome shotgun sequence.	67854	66831	41713	41772	1	218171	0.31	0.31	0.19	0.19	0.38	0.9346	0.0083	0.9918	1.9599	118	100	218	69962	41971	34302	38847	185082	0.38	0.23	0.18	0.21	0.39	0.8811	0.5319	0.6115	1.8774	238	97	77	174	56482	33150	27600	30935	148167	0.38	0.22	0.18	0.21	0	0.39	0.8803	0.5432	0.6047	1.8734	139	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	1	2	28	29	45	47	149	0.18	0.2	0.29	0.32	0	0.61	0.8452	0.2776	0.7665	1.9443	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1059	625	1125	410	1319	1218	736	725	273	418	689	3075	758	154	528	1767	447	328	906	796	210	1262	491	1611	425	709	1437	727	606	1435	1055	516	413	2528	1620	1420	547	299	922	531	452	64	3526	513	244	1475	309	919	274	349	151	181	787	389	364	1047	9	159	145	276	1221	130	35	250
GCF_002153915.1	NZ_MRZU01000003	NZ_MRZU01000003.1	Methanonatronarchaeum thermophilum strain AMET1 AMET1_3; whole genome shotgun sequence.	214542	253058	140338	141875	0	749813	0.29	0.34	0.19	0.19	0.38	0.9379	0.0878	0.9185	1.9524	294	469	763	247091	142075	118462	130779	638407	0.38	0.23	0.18	0.21	0.39	0.8835	0.4943	0.6339	1.882	888	240	381	621	206573	117273	99184	108162	531192	0.39	0.22	0.18	0.2	0	0.39	0.8835	0.5047	0.6273	1.8789	483	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	4	11	15	205	214	343	390	1152	0.18	0.18	0.3	0.34	0	0.64	0.8677	0.2362	0.8	1.9225	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	3941	2157	4315	1554	4801	3965	2582	2857	1077	1552	2512	11664	2943	473	1662	6268	1708	1074	3383	2646	803	3757	1802	5514	1402	2477	5236	1990	2437	5635	3682	2117	1613	9007	5799	4910	1840	1043	3262	1844	1596	240	13276	1944	736	4550	1096	3770	921	1382	568	684	2964	1458	1181	3872	37	411	488	828	4246	449	135	928
GCF_002153915.1	NZ_MRZU01000004	NZ_MRZU01000004.1	Methanonatronarchaeum thermophilum strain AMET1 AMET1_4; whole genome shotgun sequence.	152182	145637	94383	91182	0	483384	0.31	0.3	0.2	0.19	0.38	0.9407	0.0392	0.9615	1.9604	252	258	510	154520	92844	77894	86141	411399	0.37	0.23	0.19	0.21	0.4	0.881	0.5282	0.6153	1.8771	395	203	193	396	124507	73964	62281	68315	329067	0.38	0.23	0.19	0.21	0	0.39	0.8806	0.5431	0.6059	1.8734	292	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	1	2	133	145	142	207	627	0.21	0.23	0.23	0.33	0	0.56	0.9076	0.2295	0.8028	1.9752	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	7	14	21	254	308	474	542	1578	0.16	0.19	0.3	0.34	0	0.64	0.8603	0.2814	0.7663	1.9165	3	3	1172	848	1109	1420	4549	0.25	0.19	0.26	0.31	0	0.57	0.9123	0.2184	0.8076	1.9754	2524	1342	2458	882	3019	2599	1591	1501	706	977	1357	6462	1708	311	1063	3804	991	835	2090	1758	553	2415	1304	3318	920	1634	3319	1679	1483	3386	2234	1272	990	5779	3614	3055	1180	650	2125	1186	1051	139	7934	1138	497	3182	795	2064	601	821	377	478	1689	917	851	2313	22	302	361	568	2595	285	89	546
GCF_002153915.1	NZ_MRZU01000005	NZ_MRZU01000005.1	Methanonatronarchaeum thermophilum strain AMET1 AMET1_5; whole genome shotgun sequence.	13252	12699	6933	7349	0	40233	0.33	0.32	0.17	0.18	0.35	0.9325	0.0504	0.9508	1.938	23	17	40	12692	8861	5555	7090	34198	0.38	0.25	0.17	0.2	0.37	0.8873	0.4149	0.6805	1.8808	74	19	11	30	10230	6750	4659	5667	27306	0.39	0.24	0.18	0.2	0	0.37	0.8878	0.4289	0.6713	1.8841	69	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	1	1	14	13	23	25	75	0.19	0.17	0.31	0.33	0	0.64	0.8809	0.0787	0.9243	1.9415	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	181	163	189	97	177	257	166	227	51	74	252	497	149	22	117	230	135	56	133	181	37	208	83	325	93	114	218	126	175	221	178	117	59	377	198	212	65	46	130	85	69	16	738	94	38	261	85	180	56	101	39	48	212	105	70	164	3	39	40	63	175	21	6	58
GCF_002153915.1	NZ_MRZU01000006	NZ_MRZU01000006.1	Methanonatronarchaeum thermophilum strain AMET1 AMET1_6; whole genome shotgun sequence.	2905	2688	2147	1465	0	9205	0.32	0.29	0.23	0.16	0.39	0.9215	0.2276	0.8038	1.9555	4	6	10	2519	1698	1307	1656	7180	0.38	0.23	0.19	0.21	0.4	0.8653	0.5929	0.577	1.8625	0	3	3	6	1422	929	712	915	3978	0.36	0.24	0.18	0.21	0	0.4	0.8531	0.6682	0.523	1.8484	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	42	15	28	8	37	34	23	17	7	8	9	80	26	2	13	38	5	8	20	22	1	39	12	33	10	18	46	36	19	28	31	14	15	57	39	43	9	4	16	13	27	0	89	14	5	57	8	31	20	4	8	13	10	12	10	21	0	7	5	10	31	4	2	13
GCF_002153915.1	NZ_MRZU01000007	NZ_MRZU01000007.1	Methanonatronarchaeum thermophilum strain AMET1 AMET1_7; whole genome shotgun sequence.	2037	3166	1469	1048	0	7720	0.26	0.41	0.19	0.14	0.33	0.9077	0.3843	0.6784	1.8811	0	6	6	2970	1778	972	1366	7086	0.43	0.24	0.14	0.19	0.33	0.8858	0.4766	0.6379	1.8498	114	0	4	4	2632	1599	866	1212	6309	0.43	0.25	0.14	0.19	0	0.33	0.8923	0.4059	0.6722	1.8683	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	41	49	39	33	29	45	31	50	15	26	94	140	29	7	26	41	24	7	31	44	8	27	9	106	21	12	41	22	60	47	26	36	7	86	41	37	9	6	17	12	23	2	212	10	3	54	23	64	10	26	6	6	73	32	22	25	1	4	6	8	56	3	0	3
GCF_002153915.1	NZ_MRZU01000008	NZ_MRZU01000008.1	Methanonatronarchaeum thermophilum strain AMET1 AMET1_8; whole genome shotgun sequence.	983	849	766	507	0	3105	0.32	0.27	0.25	0.16	0.41	0.9187	0.2766	0.7628	1.9619	0	3	3	697	854	435	693	2679	0.26	0.33	0.16	0.26	0.41	0.9149	0.3675	0.7019	1.9466	4	0	2	2	401	550	286	392	1629	0.24	0.35	0.16	0.24	0	0.4	0.9143	0.3757	0.6857	1.9452	4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	12	13	13	5	10	14	14	16	3	7	3	8	5	3	11	7	11	6	22	14	12	20	4	7	2	8	16	26	19	10	15	11	6	27	8	4	1	2	10	15	5	0	14	11	0	31	5	6	1	2	4	6	12	6	9	4	0	1	3	1	0	0	1	1